mRNA_H-canaliculatus_F_contig1322.2651.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1322.2651.1
Unique NamemRNA_H-canaliculatus_F_contig1322.2651.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1322.2651.1 vs. uniprot
Match: D7FN51_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN51_ECTSI)

HSP 1 Score: 462 bits (1189), Expect = 2.930e-150
Identity = 256/405 (63.21%), Postives = 286/405 (70.62%), Query Frame = 3 
Query:  366 RCEVCGMNLHPECQATPCSDDHQCRRPEAVHISAGVDGSRLMGVRLKPGYPGANKG--NGIKSRGVADSPAEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGWCSHTAVSDKVLSVNQVTGAVVRLSSGEPVRCCTPCTRVLDQQLSQALQRKGWGARHGTPAALDAVRKRFPGQSSSLSSTPFVAAGGAGYAATLPVLAAEKRSLDPPESYDGGGFAPPSSVSRNHIAPPRIGGFDGS-----------YEEGGNGSPTGEGRGHDRGSSAGSGVD-IDNPLARMTQXXXXXXXXXXXXQWQEEPEPTVGEVPSWLGNSLLGSSRRTSAPTSTRATTGARHAPSPVASQQPEE---DAGTVWGDEA------TDWSNSGSVV 1511
            +C VCGMN+HPECQATPCSDDH CR PE+V ISAGVDGSR MGVRLKPGYPG   G   G +S G +D+  EDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCG+CSHTAVSDKVLSVNQ TGAV+RLSSGEPVRCCTPCTRVLDQQL+ ALQRKGWGARHGTPAA++A+RKRFPG SSS  STPFVAAGGAGYAATLP+L+A        E YDGGGF PP S SR +                       Y  GG      +GRG+D  S        +++PLA + +            +WQE P+PT GEVPSWLG S LGSSR  +A   +  TT A  AP P A Q  EE   + G VWG+E+      TDWSNSG+VV
Sbjct:  172 QCAVCGMNIHPECQATPCSDDHCCRPPESVQISAGVDGSRNMGVRLKPGYPGGKNGVLGGSRSGGTSDALVEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGARHGTPAAINAIRKRFPGPSSS--STPFVAAGGAGYAATLPILSAAAT-----EGYDGGGFVPPPSTSRPNAEEXXXXXXXXXXXXXXXXXXXXYHGGG------DGRGYDSESPVRRMKHGVEDPLASVQEHSPPPPPR----RWQE-PQPTAGEVPSWLGKSSLGSSRLPAATPKSAVTTSAGRAPLPDAEQYYEEGLEEEGGVWGEESAGMEETTDWSNSGAVV 558
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BLAST of mRNA_H-canaliculatus_F_contig1322.2651.1 vs. uniprot
Match: A0A835YKQ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKQ1_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.990e-32
Identity = 79/191 (41.36%), Postives = 106/191 (55.50%), Query Frame = 3 
Query:  369 CEVCGMNLHPECQATPCSDDHQCRRPEAVHISA------GVDGSRLMGVR--LKPGYPGANKGNGIKSRGVADSPAEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGWCSHTAVSDKVLSVNQVTGAVVRLSSGEPVRCCTPCTRVLDQQLSQALQRK-GWGARHGTPA 914
            C  C M +H  CQ   C+ DH+C    A+ ++       G     L G    L P  P            +A S +EDP +SDWH+ L+++ ++ VPD  A  CMVCS  FN+V RRHHCRRCG C+CG CS   VSDKV+  +   G V  +   EPVR CT CTRV+D+ L++AL ++ G G +HG  A
Sbjct:  276 CTKCEMAVHAACQHALCTADHKCFHAAALKVTLTDGVPLGEQVPELSGASAALNPPLP------------LAHSRSEDPTHSDWHKHLLRSCEMRVPDRTALACMVCSAMFNIVRRRHHCRRCGACVCGACSAVKVSDKVMVQDFSGGPVRYVKETEPVRTCTRCTRVVDEALARALSKRVGGGRKHGPGA 454
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BLAST of mRNA_H-canaliculatus_F_contig1322.2651.1 vs. uniprot
Match: A0A7S2XYB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYB4_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.200e-23
Identity = 49/114 (42.98%), Postives = 71/114 (62.28%), Query Frame = 3 
Query:  573 EDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGWCSHTAVSDKVLSVNQVTGAVVRL-------------SSGEPVRCCTPCTRVLDQQLSQAL 875
            EDPL+S+WH+QLV+  Q WVPDSVA  CMVC   F ++ RRHHCRRCG C+CG+CS   +++KVL  +     ++ L             +S   VR C  CT ++D++++ +L
Sbjct:    9 EDPLDSNWHKQLVKRRQEWVPDSVAPCCMVCGSVFGMLRRRHHCRRCGACVCGYCSSATITEKVLRTDPRNDEIISLMTVAGPTPDGGAAASEALVRVCAKCTVLIDRRIATSL 122
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BLAST of mRNA_H-canaliculatus_F_contig1322.2651.1 vs. uniprot
Match: A0A7S3XR58_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR58_HETAK)

HSP 1 Score: 112 bits (279), Expect = 2.190e-22
Identity = 58/154 (37.66%), Postives = 76/154 (49.35%), Query Frame = 3 
Query:  366 RCEVCGMNLHPECQATPCSDDHQCRRPEAVHISAGVDGSRLMGVRLKPGYPGANKGNG--------------------IKSRGVADSPAEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGWCSHTAVSDKVL 767
            RC VC M +H EC+    + DH+CR+P+A+ +   V   R+    L   +   ++GN                        R   +   EDPL S WHQ+L    + WVPDSVA  CMVC   F L  RRHHCRRCG C+C  CS + V+D  L
Sbjct:  276 RCSVCRMEVHAECRVALVTPDHKCRQPQALSVRESVPEVRMTAHELAVAHR-RSRGNSQTXXXXXXXXXXXXXXPSAPAPGRNDDEVELEDPLASVWHQRLRARGEAWVPDSVAPACMVCGAAFGLFTRRHHCRRCGACVCAGCSASRVTDPAL 428
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BLAST of mRNA_H-canaliculatus_F_contig1322.2651.1 vs. uniprot
Match: A0A1D2MG42_ORCCI (Pleckstrin y domain-containing family F member 2 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MG42_ORCCI)

HSP 1 Score: 71.2 bits (173), Expect = 7.520e-10
Identity = 35/76 (46.05%), Postives = 44/76 (57.89%), Query Frame = 3 
Query:  612 QNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGWCSHTAVSDKVLSVNQVTGAVVRLSSGEPVRCCTPC 839
            Q+  +WVPDS AA C VC  PF  V RRHHCR+CG+ +CG CS     ++ L  NQ         S +P+R C PC
Sbjct:  144 QHAAVWVPDSEAAACQVCRNPFTFVNRRHHCRKCGSVICGPCS----KNRALLPNQ---------SKKPLRVCNPC 206
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BLAST of mRNA_H-canaliculatus_F_contig1322.2651.1 vs. uniprot
Match: A0A418B4W1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B4W1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.820e-8
Identity = 36/84 (42.86%), Postives = 44/84 (52.38%), Query Frame = 3 
Query:  624 LWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGWCSHTAVSDKVLSVNQVTGAVVRLSSGEPVRCCTPCTRVLDQQLSQAL 875
            +W+PDSV+  C  C + F L+LRRHHCRRCG  +CG CS       +L  N +           PVR C  C RVLD     AL
Sbjct:  350 VWIPDSVSEECSQCRKAFRLLLRRHHCRRCGFVVCGLCSEHR---SILFDNDM----------RPVRVCNKCNRVLDLVKQSAL 420
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BLAST of mRNA_H-canaliculatus_F_contig1322.2651.1 vs. uniprot
Match: A0A7L2E7G1_ANTMN (FGD6 protein (Fragment) n=12 Tax=Aves TaxID=8782 RepID=A0A7L2E7G1_ANTMN)

HSP 1 Score: 66.6 bits (161), Expect = 3.600e-8
Identity = 38/124 (30.65%), Postives = 54/124 (43.55%), Query Frame = 3 
Query:  576 DPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGWCSHTAVSDKVLSVNQVTGAVVRLSSGEPVRCCTPCTRVLDQQLSQALQRKGWGARHGTPA-ALDAVRKRFP 944
            DP   +    L     +W+PD+ A  CM+C+  F L  RRHHCR CG  +C  CS                  +     +P R C  C R L +Q +Q   + G    H +P+ AL +V +  P
Sbjct:   68 DPEKQEEDSPLGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSNKHG-------------LDYMKNQPARVCDHCFRELQKQDNQCTPKSGSPVNHKSPSSALSSVLQSIP 178
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BLAST of mRNA_H-canaliculatus_F_contig1322.2651.1 vs. uniprot
Match: A0A024UQR4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQR4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.020e-8
Identity = 36/84 (42.86%), Postives = 44/84 (52.38%), Query Frame = 3 
Query:  624 LWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGWCSHTAVSDKVLSVNQVTGAVVRLSSGEPVRCCTPCTRVLDQQLSQAL 875
            +W+PDSV+  C  C + F L+LRRHHCRRCG  +CG CS       +L  N +           PVR C  C RVLD     AL
Sbjct:  422 VWIPDSVSEECSQCRKAFRLLLRRHHCRRCGFVVCGLCSEHR---SILFDNDM----------RPVRVCNKCNRVLDLVKQSAL 492
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BLAST of mRNA_H-canaliculatus_F_contig1322.2651.1 vs. uniprot
Match: A0A0M0JJI2_9EUKA (Myosin-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JJI2_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 5.780e-8
Identity = 31/79 (39.24%), Postives = 41/79 (51.90%), Query Frame = 3 
Query:  603 QLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGWCSHTAVSDKVLSVNQVTGAVVRLSSGEPVRCCTPC 839
            + + +  LWVPD V+A CM+C  PF    RRHHCR CGT +CG CS                 + + +  EPVR C+ C
Sbjct:  615 EAISHPPLWVPDHVSALCMLCREPFTATRRRHHCRHCGTTVCGTCSARRAP------------IAKFAIKEPVRLCSTC 681
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1322.2651.1 vs. uniprot
Match: A0A7L3CJA7_PELUR (FGD6 protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L3CJA7_PELUR)

HSP 1 Score: 65.5 bits (158), Expect = 6.360e-8
Identity = 38/124 (30.65%), Postives = 52/124 (41.94%), Query Frame = 3 
Query:  576 DPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGWCSHTAVSDKVLSVNQVTGAVVRLSSGEPVRCCTPCTRVLDQQLSQALQRKGWGARHGTPA-ALDAVRKRFP 944
            DP   +    L     +W+PD+ A  CM+C+  F L  RRHHCR CG  +C  CS                  +     +P R C  C R L +Q +Q   + G    H +P+ AL  V    P
Sbjct:   42 DPEKQEEDSPLGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSNKHG-------------LDYMKNQPARVCDHCFRELQKQDNQCTPKSGSPVNHKSPSSALSTVLHSIP 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1322.2651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN51_ECTSI2.930e-15063.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YKQ1_9STRA3.990e-3241.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XYB4_9STRA1.200e-2342.98Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3XR58_HETAK2.190e-2237.66Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1D2MG42_ORCCI7.520e-1046.05Pleckstrin y domain-containing family F member 2 n... [more]
A0A418B4W1_9STRA2.820e-842.86Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7L2E7G1_ANTMN3.600e-830.65FGD6 protein (Fragment) n=12 Tax=Aves TaxID=8782 R... [more]
A0A024UQR4_9STRA4.020e-842.86Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A0M0JJI2_9EUKA5.780e-839.24Myosin-like protein n=1 Tax=Chrysochromulina tobin... [more]
A0A7L3CJA7_PELUR6.360e-830.65FGD6 protein (Fragment) n=2 Tax=Neognathae TaxID=8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1322contigH-canaliculatus_F_contig1322:24054..27896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score469.5
Seed ortholog evalue1.6e-129
Seed eggNOG ortholog2880.D7FN51
KEGG koko:K04679,ko:K18052,ko:K19662
KEGG Pathwayko01521,ko04010,ko04012,ko04014,ko04015,ko04020,ko04062,ko04064,ko04066,ko04070,ko04071,ko04140,ko04144,ko04150,ko04270,ko04310,ko04350,ko04370,ko04510,ko04540,ko04650,ko04658,ko04659,ko04660,ko04662,ko04666,ko04670,ko04713,ko04720,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04750,ko04911,ko04912,ko04916,ko04918,ko04919,ko04920,ko04921,ko04925,ko04931,ko04933,ko04960,ko04961,ko04970,ko04971,ko04972,ko04973,ko05031,ko05032,ko05140,ko05143,ko05146,ko05161,ko05162,ko05200,ko05205,ko05206,ko05214,ko05223,ko05225,ko05231,map01521,map04010,map04012,map04014,map04015,map04020,map04062,map04064,map04066,map04070,map04071,map04140,map04144,map04150,map04270,map04310,map04350,map04370,map04510,map04540,map04650,map04658,map04659,map04660,map04662,map04666,map04670,map04713,map04720,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04750,map04911,map04912,map04916,map04918,map04919,map04920,map04921,map04925,map04931,map04933,map04960,map04961,map04970,map04971,map04972,map04973,map05031,map05032,map05140,map05143,map05146,map05161,map05162,map05200,map05205,map05206,map05214,map05223,map05225,map05231
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981
EggNOG free text desc.1-phosphatidylinositol binding
EggNOG OGsKOG0694@1,KOG0694@2759,KOG1841@1,KOG1841@2759
EC2.7.11.13
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionFYVE zinc finger
Ec32 orthologEc-06_008410.1
Exons5
Model size2579
Cds size1287
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.308574-UTR-H-canaliculatus_F_contig1322:24053..247001622929061.308574-UTR-H-canaliculatus_F_contig1322:24053..24700Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1322 24054..24700 -
1696845664.9663162-UTR-H-canaliculatus_F_contig1322:24053..247001696845664.9663162-UTR-H-canaliculatus_F_contig1322:24053..24700Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1322 24054..24700 -
1622929061.3235507-UTR-H-canaliculatus_F_contig1322:24711..251291622929061.3235507-UTR-H-canaliculatus_F_contig1322:24711..25129Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1322 24712..25129 -
1696845664.9803915-UTR-H-canaliculatus_F_contig1322:24711..251291696845664.9803915-UTR-H-canaliculatus_F_contig1322:24711..25129Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1322 24712..25129 -
1622929061.401366-UTR-H-canaliculatus_F_contig1322:27669..278961622929061.401366-UTR-H-canaliculatus_F_contig1322:27669..27896Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1322 27670..27896 -
1696845665.0311828-UTR-H-canaliculatus_F_contig1322:27669..278961696845665.0311828-UTR-H-canaliculatus_F_contig1322:27669..27896Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1322 27670..27896 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.3400362-CDS-H-canaliculatus_F_contig1322:25129..257651622929061.3400362-CDS-H-canaliculatus_F_contig1322:25129..25765Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1322 25130..25765 -
1696845664.9903173-CDS-H-canaliculatus_F_contig1322:25129..257651696845664.9903173-CDS-H-canaliculatus_F_contig1322:25129..25765Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1322 25130..25765 -
1622929061.3590813-CDS-H-canaliculatus_F_contig1322:25982..260991622929061.3590813-CDS-H-canaliculatus_F_contig1322:25982..26099Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1322 25983..26099 -
1696845665.00003-CDS-H-canaliculatus_F_contig1322:25982..260991696845665.00003-CDS-H-canaliculatus_F_contig1322:25982..26099Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1322 25983..26099 -
1622929061.373735-CDS-H-canaliculatus_F_contig1322:26587..267401622929061.373735-CDS-H-canaliculatus_F_contig1322:26587..26740Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1322 26588..26740 -
1696845665.0085068-CDS-H-canaliculatus_F_contig1322:26587..267401696845665.0085068-CDS-H-canaliculatus_F_contig1322:26587..26740Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1322 26588..26740 -
1622929061.384608-CDS-H-canaliculatus_F_contig1322:27288..276691622929061.384608-CDS-H-canaliculatus_F_contig1322:27288..27669Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1322 27289..27669 -
1696845665.0185218-CDS-H-canaliculatus_F_contig1322:27288..276691696845665.0185218-CDS-H-canaliculatus_F_contig1322:27288..27669Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1322 27289..27669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1322.2651.1prot_H-canaliculatus_F_contig1322.2651.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1322 25130..27669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1322.2651.1

>prot_H-canaliculatus_F_contig1322.2651.1 ID=prot_H-canaliculatus_F_contig1322.2651.1|Name=mRNA_H-canaliculatus_F_contig1322.2651.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=429bp
MICRHPVLPLLLLLEIANQLSYQILSSNEGAHERVVTCMENSRASCRCEV
CGMNLHPECQATPCSDDHQCRRPEAVHISAGVDGSRLMGVRLKPGYPGAN
KGNGIKSRGVADSPAEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPF
NLVLRRHHCRRCGTCMCGWCSHTAVSDKVLSVNQVTGAVVRLSSGEPVRC
CTPCTRVLDQQLSQALQRKGWGARHGTPAALDAVRKRFPGQSSSLSSTPF
VAAGGAGYAATLPVLAAEKRSLDPPESYDGGGFAPPSSVSRNHIAPPRIG
GFDGSYEEGGNGSPTGEGRGHDRGSSAGSGVDIDNPLARMTQQQQQQRSS
STPPQWQEEPEPTVGEVPSWLGNSLLGSSRRTSAPTSTRATTGARHAPSP
VASQQPEEDAGTVWGDEATDWSNSGSVV*
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mRNA from alignment at H-canaliculatus_F_contig1322:24054..27896-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1322.2651.1 ID=mRNA_H-canaliculatus_F_contig1322.2651.1|Name=mRNA_H-canaliculatus_F_contig1322.2651.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3843bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1322:24054..27896- (Hapterophycus canaliculatus Oshoro5f female)
TTAAACCATACCATAGAGGCCCAGACCGCTCGAATAATGTTGGGATGACA
GTGCACCATTCGAGACAAACCGTCCGACAGGGAGCTTAAACAATGCAAGA
GTGTGTTGTTCACCATGAGTAGATCAGCTGTCGCGATGTGCAGTCTGGTA
CACCAGTCAACGATGCAAATTCAAAGGGAAGCTGCGGTTCACGGGGAATA
TTGAAGTTTCCGTTCGCTTCGTCAGCAATGATTTGCCGGCATCCCGTCCT
CCCCCTTTTGCTGCTGCTGGAAATTGCAAACCAGCTCTCATACCAAATCC
TCTCCTCGAACGAAGGTGCACATGAACGAGTCGTGACGTGTATGGAAAAC
TCTCGTGCCTCCTGCAGATGCGAAGTCTGTGGCATGAACCTCCACCCTGA
GTGTCAAGCTACACCTTGTTCGGATGATCACCAATGCCGGCGTCCCGAAG
CCGTGCACATTTCGGCCGGAGTGGATGGTTCTCGGCTCATGGGGGTGCGT
CTAAAGCCGGGCTACCCCGGCGCGAACAAAGGAAATGGGATTAAGAGTAG
GGGTGTTGCCGATTCTCCTGCGGAGGACCCTCTAAACAGCGACTGGCACC
AGCAGCTGGTGAGTTTTTGTGTGTACAGAATACTGTTCGGGATCAAGATG
GATACTCGTTTTCGTGATGGCACTGATGCCTTTGGCGTGGCGTGGACAGT
TTGAACAGGGGTGGGACGGACCAAATATCGGCACGATTGTTTTTGTCTCA
TTTTGAGGTGCCCGTCTTCACTATGTCTCGCGATGCGCTGAGAACCGTGA
TGTAGGCACTCCAGCCCAGCGCTTCGTCTCTTGCAGTATTCGATTAGAGC
GGGTTGTACGAGCTCACTGTGGGTGAAGAGCTCGCATCCGTTTGATCAAA
ATCTCGGTCCGTGCGCGCCACTCGTTGCTGCCTTGCTGCCTTGCTGCTTT
GCTGGCTTGCTGGCTTGCTTTACGGTATGTCCCTCTGCTCGGTATTGCAA
CACCATCTTTTCTAGCCTGCTGCATCTTGCTCTCTTTCATACCTGTGATC
GATTTTCAGAGTGTCTTCTTGTCGTTTCGAGTATAGCTCTTGTGGCCACC
GGCTCGCACTGACTTCCTTACCGTGACATCGCCGCGGACGCCTTCCGCCG
GTAAAGGTGCAAAACAATCAACTCTGGGTACCAGACTCCGTGGCCGCGGG
GTGCATGGTCTGCTCCCGTCCGTTCAACCTTGTACTTCGAAGGCACCACT
GTCGCCGGTGCGGGACATGCATGTGCGGCTGGTGCTCGCACACGGCTGTG
AGCGATAAGGTGCGTGTCTCTTTGGTTTCGGGTTTTACCTATCTTGTAGT
TCGTTGATCGATAATTGACTCTCATTTGCTACAGCTAAGTGGACTTTTGT
CACCGAAAATGACGGTACACTAAAACTTCGAAAGCTTTTGACATTCCTCT
GCTGCACACCCTCTTCTTCATCGTGGTACTGAGCTGGGTTGCTTGTTGAT
TTCGGGCATTTGTCACGTCTGGCGCAAATCAAGTTCTCTGCATCTCGATG
ACGGGATGAGGAATCGCGTCTCTCTTGAAGGCTGTAGTGCTTGTTGCTGG
GGGAGGTCATTAGACTAGGTTTTCAGTGTCCAAAATGTAGGCGACTGGCG
TGTTGTGTACATGTCGAGAGCGTGAACAGGCTTGGAACAACGTAGTCTCT
CCGAGTTTCTGTTCCTATCGCTGCCCCCTGATTAGCTGTTGCCCAGAAGA
ACGTTTGCTACCTCTATTTCGCCCTTCTTTGATCATGTCACACGCAGGTG
CTGTCAGTAAACCAGGTCACCGGTGCTGTGGTGAGGCTGTCGTCGGGCGA
ACCAGTCCGCTGCTGCACCCCGTGTACGCGCGTCCTCGACCAGCAACTCT
CGCAGGCATTACAGGTCAGTCGACGCTGAGGGATGGGGTTGGTGATGTGG
AATGTGGACCATTTTCTTCATCGCCGGACTTACGTGTCTCTTCGTTTCCA
CGCGCGTGCCGTCGGGTGTTCCCTGATTCTTTGCGAAGACCGCGCACTTT
CCCGTGTCTCATTGGGAACTTCTCGATCTCAATCCTTCCTCCTCGCGTGA
ACGCAACCTCTTCGCGCACTTCCAACGCCAGCGGAAAGGGTGGGGAGCTA
GACACGGCACCCCGGCAGCCCTTGATGCCGTGCGCAAAAGATTCCCGGGG
CAGTCGTCGTCATTGTCGTCGACTCCTTTCGTCGCTGCCGGAGGTGCAGG
CTACGCGGCCACTTTGCCGGTTTTGGCTGCAGAGAAGCGGTCCTTAGACC
CACCGGAGAGTTACGATGGTGGAGGGTTTGCACCCCCCTCTTCCGTATCC
CGCAATCACATTGCACCACCAAGAATCGGTGGCTTCGATGGTAGTTACGA
GGAGGGAGGCAACGGAAGTCCAACTGGAGAAGGGAGAGGCCACGACCGTG
GGAGTTCCGCTGGCAGCGGCGTTGATATCGATAATCCGCTCGCCAGAATG
ACTCAGCAACAGCAGCAGCAGCGGTCGTCCTCTACCCCACCGCAGTGGCA
GGAAGAACCTGAGCCAACTGTTGGAGAGGTGCCGTCTTGGCTGGGAAATA
GTTTACTGGGCTCGTCCCGGCGAACATCCGCGCCGACCTCAACCCGCGCC
ACTACCGGCGCCAGGCATGCACCGTCACCCGTGGCGAGCCAACAGCCAGA
AGAGGACGCGGGAACGGTGTGGGGGGATGAGGCGACGGACTGGTCCAACT
CCGGATCCGTGGTATAGGTCCCGTCTTTGCCGCCCAAACTAATATTGCGG
CGCAGAGTTTCGTTTGCCCTTGCGCTCCATTCTGCAGGGGATGTGGTGCC
TGTCTCATGTTGCGGCGAGGGTAGAAATAGTGACAGGGCGGGGACGACTT
GTCCATGTTCCGGTGCTCGACGCCGCTGCTGGGTGGGAAAATGGACGACG
TTACCTCTTTGTATCGCCGTGTGCGACGGCGTTGTTTTACCGTATGGATG
GGAAGTCCGACATTTGCTCCCGGATTTGTTGGCCGAAAGTCGACAAACCC
CGTTGTTTCGGCCTGGTTTTGCGCCCGTTCGATCCTGTTACAGAACACTA
TAGGACGCCAATCCCGTCTGAGGTTGGGTATATAAAAAATACACATCCCG
AATGTTGTGTGCCTGTGGTAGTTTATCACAGCAAGGTCACAGCAAGGAAT
GCCGGACGGGTGCGGGTAGCACGAGGCTAGGGTTGGCTTGGGCAGAGACT
CGGCCTTTCGATTTTGAATGGAAACATTTCGAGCCTGCTCGCTCTCGTAC
GAGGTGTTTCCTTCACGAAGAGAATGATAAACGTGGCAGACTCCAGCGTA
AGTCAAGGGCAAAGTCACAGTCCGTGTCATCGCGTCCTTTACAATCGCGG
GAACTTTTACGTCGATTGTGTATGTCTGCACTGACGGCCCTTGATCATGA
GCGTTGCATTGACAAAAATACCCCGAAGACCTTTCAGTTAGAGCACTAAG
ATACCGGGCCATTCGAGGGTTTTTCTGCTGGCTTATACGTGTCCGCTCTC
TCGAAGTACCTCGTGCCCCATGTTGTTGGCTAGATGCCCATGATGCACCC
TCCTCGTGGTCGATCGTCCGATTATCCCGTTCCCAGTACACTCAGGTTGA
CCTTAAGAGTTCACAGCAGTCTGTCATGAAGGAAGGTCAGAGGGGTCCAG
CTGTCCAATCCGTCATTTTATGCCTACAACATTGTTTTGCACTCCAAGCC
TGCACTGTCGATACGCTCTTCAGATCCAGGTCCGTTGACTGCGTACGACC
CTCGTCAATGAAGGGAACGGCTTCGCCCGCGAAAATGCGGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1322:24054..27896-

>mRNA_H-canaliculatus_F_contig1322.2651.1 ID=mRNA_H-canaliculatus_F_contig1322.2651.1|Name=mRNA_H-canaliculatus_F_contig1322.2651.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2574bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1322:24054..27896- (Hapterophycus canaliculatus Oshoro5f female)
ATGATTTGCCGGCATCCCGTCCTCCCCCTTTTGCTGCTGCTGGAAATTGC
AAACCAGCTCTCATACCAAATCCTCTCCTCGAACGAAGGTGCACATGAAC
GAGTCGTGACGTGTATGGAAAACTCTCGTGCCTCCTGCAGATGCGAAGTC
TGTGGCATGAACCTCCACCCTGAGTGTCAAGCTACACCTTGTTCGGATGA
TCACCAATGCCGGCGTCCCGAAGCCGTGCACATTTCGGCCGGAGTGGATG
GTTCTCGGCTCATGGGGGTGCGTCTAAAGCCGGGCTACCCCGGCGCGAAC
AAAGGAAATGGGATTAAGAGTAGGGGTGTTGCCGATTCTCCTGCGGAGGA
CCCTCTAAACAGCGACTGGCACCAGCAGCTGATGATTTGCCGGCATCCCG
TCCTCCCCCTTTTGCTGCTGCTGGAAATTGCAAACCAGCTCTCATACCAA
ATCCTCTCCTCGAACGAAGGTGCACATGAACGAGTCGTGACGTGTATGGA
AAACTCTCGTGCCTCCTGCAGATGCGAAGTCTGTGGCATGAACCTCCACC
CTGAGTGTCAAGCTACACCTTGTTCGGATGATCACCAATGCCGGCGTCCC
GAAGCCGTGCACATTTCGGCCGGAGTGGATGGTTCTCGGCTCATGGGGGT
GCGTCTAAAGCCGGGCTACCCCGGCGCGAACAAAGGAAATGGGATTAAGA
GTAGGGGTGTTGCCGATTCTCCTGCGGAGGACCCTCTAAACAGCGACTGG
CACCAGCAGCTGGTGCAAAACAATCAACTCTGGGTACCAGACTCCGTGGC
CGCGGGGTGCATGGTCTGCTCCCGTCCGTTCAACCTTGTACTTCGAAGGC
ACCACTGTCGCCGGTGCGGGACATGCATGTGCGGCTGGTGCTCGCACACG
GCTGTGAGCGATAAGGTGCAAAACAATCAACTCTGGGTACCAGACTCCGT
GGCCGCGGGGTGCATGGTCTGCTCCCGTCCGTTCAACCTTGTACTTCGAA
GGCACCACTGTCGCCGGTGCGGGACATGCATGTGCGGCTGGTGCTCGCAC
ACGGCTGTGAGCGATAAGGTGCTGTCAGTAAACCAGGTCACCGGTGCTGT
GGTGAGGCTGTCGTCGGGCGAACCAGTCCGCTGCTGCACCCCGTGTACGC
GCGTCCTCGACCAGCAACTCTCGCAGGCATTACAGGTGCTGTCAGTAAAC
CAGGTCACCGGTGCTGTGGTGAGGCTGTCGTCGGGCGAACCAGTCCGCTG
CTGCACCCCGTGTACGCGCGTCCTCGACCAGCAACTCTCGCAGGCATTAC
AGCGGAAAGGGTGGGGAGCTAGACACGGCACCCCGGCAGCCCTTGATGCC
GTGCGCAAAAGATTCCCGGGGCAGTCGTCGTCATTGTCGTCGACTCCTTT
CGTCGCTGCCGGAGGTGCAGGCTACGCGGCCACTTTGCCGGTTTTGGCTG
CAGAGAAGCGGTCCTTAGACCCACCGGAGAGTTACGATGGTGGAGGGTTT
GCACCCCCCTCTTCCGTATCCCGCAATCACATTGCACCACCAAGAATCGG
TGGCTTCGATGGTAGTTACGAGGAGGGAGGCAACGGAAGTCCAACTGGAG
AAGGGAGAGGCCACGACCGTGGGAGTTCCGCTGGCAGCGGCGTTGATATC
GATAATCCGCTCGCCAGAATGACTCAGCAACAGCAGCAGCAGCGGTCGTC
CTCTACCCCACCGCAGTGGCAGGAAGAACCTGAGCCAACTGTTGGAGAGG
TGCCGTCTTGGCTGGGAAATAGTTTACTGGGCTCGTCCCGGCGAACATCC
GCGCCGACCTCAACCCGCGCCACTACCGGCGCCAGGCATGCACCGTCACC
CGTGGCGAGCCAACAGCCAGAAGAGGACGCGGGAACGGTGTGGGGGGATG
AGGCGACGGACTGGTCCAACTCCGGATCCGTGGTATAGCGGAAAGGGTGG
GGAGCTAGACACGGCACCCCGGCAGCCCTTGATGCCGTGCGCAAAAGATT
CCCGGGGCAGTCGTCGTCATTGTCGTCGACTCCTTTCGTCGCTGCCGGAG
GTGCAGGCTACGCGGCCACTTTGCCGGTTTTGGCTGCAGAGAAGCGGTCC
TTAGACCCACCGGAGAGTTACGATGGTGGAGGGTTTGCACCCCCCTCTTC
CGTATCCCGCAATCACATTGCACCACCAAGAATCGGTGGCTTCGATGGTA
GTTACGAGGAGGGAGGCAACGGAAGTCCAACTGGAGAAGGGAGAGGCCAC
GACCGTGGGAGTTCCGCTGGCAGCGGCGTTGATATCGATAATCCGCTCGC
CAGAATGACTCAGCAACAGCAGCAGCAGCGGTCGTCCTCTACCCCACCGC
AGTGGCAGGAAGAACCTGAGCCAACTGTTGGAGAGGTGCCGTCTTGGCTG
GGAAATAGTTTACTGGGCTCGTCCCGGCGAACATCCGCGCCGACCTCAAC
CCGCGCCACTACCGGCGCCAGGCATGCACCGTCACCCGTGGCGAGCCAAC
AGCCAGAAGAGGACGCGGGAACGGTGTGGGGGGATGAGGCGACGGACTGG
TCCAACTCCGGATCCGTGGTATAG
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