mRNA_H-canaliculatus_F_contig1321.2644.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1321.2644.1
Unique NamemRNA_H-canaliculatus_F_contig1321.2644.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1321.2644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1321contigH-canaliculatus_F_contig1321:25150..25610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size461
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1321.2644.1prot_H-canaliculatus_F_contig1321.2644.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1321 25166..25486 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929059.9927936-UTR-H-canaliculatus_F_contig1321:25149..251651622929059.9927936-UTR-H-canaliculatus_F_contig1321:25149..25165Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1321 25150..25165 +
1696845664.2559128-UTR-H-canaliculatus_F_contig1321:25149..251651696845664.2559128-UTR-H-canaliculatus_F_contig1321:25149..25165Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1321 25150..25165 +
1622929060.0246756-UTR-H-canaliculatus_F_contig1321:25486..256101622929060.0246756-UTR-H-canaliculatus_F_contig1321:25486..25610Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1321 25487..25610 +
1696845664.2822745-UTR-H-canaliculatus_F_contig1321:25486..256101696845664.2822745-UTR-H-canaliculatus_F_contig1321:25486..25610Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1321 25487..25610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929060.010923-CDS-H-canaliculatus_F_contig1321:25165..254861622929060.010923-CDS-H-canaliculatus_F_contig1321:25165..25486Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1321 25166..25486 +
1696845664.2644093-CDS-H-canaliculatus_F_contig1321:25165..254861696845664.2644093-CDS-H-canaliculatus_F_contig1321:25165..25486Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1321 25166..25486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1321.2644.1

>prot_H-canaliculatus_F_contig1321.2644.1 ID=prot_H-canaliculatus_F_contig1321.2644.1|Name=mRNA_H-canaliculatus_F_contig1321.2644.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp
MGPEGQIHGKCRGCLLVNVLPFFNVAGVNTCKVYLTLVVGVSSQATTCRC
QENTWKLNSFFEKEIQSTQRAFPCCLQVNKCQNEVGVLLLDIWALHSPAE
LSHLIA*
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mRNA from alignment at H-canaliculatus_F_contig1321:25150..25610+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1321.2644.1 ID=mRNA_H-canaliculatus_F_contig1321.2644.1|Name=mRNA_H-canaliculatus_F_contig1321.2644.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=461bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1321:25150..25610+ (Hapterophycus canaliculatus Oshoro5f female)
GGGAGTGTTTGATTTCATGGGCCCAGAAGGCCAAATCCACGGGAAATGCC
GCGGCTGCTTGTTAGTGAACGTGCTTCCGTTCTTCAATGTCGCGGGAGTA
AATACGTGTAAGGTCTATCTGACACTCGTTGTCGGGGTAAGCAGTCAAGC
CACAACATGTAGGTGCCAAGAAAATACGTGGAAGCTGAACAGTTTCTTCG
AGAAGGAGATTCAGTCTACCCAGCGTGCTTTTCCATGCTGCTTGCAAGTC
AACAAGTGCCAGAATGAAGTCGGAGTGCTGTTGCTTGACATCTGGGCCCT
ACATTCTCCAGCGGAATTGTCACATCTGATCGCGTAGTGTCCTTCGTTGG
GACAACTGTGACTTTTGAACACGAATAGCGCCTTCCTTGGCTGGCGAGAG
TTTCTACTGGCCAAGTGGTTGCGTTGCGTGTGAGACTGCTCCACAATCTC
TTCATCACACA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1321:25150..25610+

>mRNA_H-canaliculatus_F_contig1321.2644.1 ID=mRNA_H-canaliculatus_F_contig1321.2644.1|Name=mRNA_H-canaliculatus_F_contig1321.2644.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1321:25150..25610+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCCCAGAAGGCCAAATCCACGGGAAATGCCGCGGCTGCTTGTTAGT
GAACGTGCTTCCGTTCTTCAATGTCGCGGGAGTAAATACGTGTAAGGTCT
ATCTGACACTCGTTGTCGGGGTAAGCAGTCAAGCCACAACATGTAGGTGC
CAAGAAAATACGTGGAAGCTGAACAGTTTCTTCGAGAAGGAGATTCAGTC
TACCCAGCGTGCTTTTCCATGCTGCTTGCAAGTCAACAAGTGCCAGAATG
AAGTCGGAGTGCTGTTGCTTGACATCTGGGCCCTACATTCTCCAGCGGAA
TTGTCACATCTGATCGCGTAGATGGGCCCAGAAGGCCAAATCCACGGGAA
ATGCCGCGGCTGCTTGTTAGTGAACGTGCTTCCGTTCTTCAATGTCGCGG
GAGTAAATACGTGTAAGGTCTATCTGACACTCGTTGTCGGGGTAAGCAGT
CAAGCCACAACATGTAGGTGCCAAGAAAATACGTGGAAGCTGAACAGTTT
CTTCGAGAAGGAGATTCAGTCTACCCAGCGTGCTTTTCCATGCTGCTTGC
AAGTCAACAAGTGCCAGAATGAAGTCGGAGTGCTGTTGCTTGACATCTGG
GCCCTACATTCTCCAGCGGAATTGTCACATCTGATCGCGTAG
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