mRNA_H-canaliculatus_F_contig1321.2642.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1321.2642.1
Unique NamemRNA_H-canaliculatus_F_contig1321.2642.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1321.2642.1 vs. uniprot
Match: A0A6H5KG63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG63_9PHAE)

HSP 1 Score: 386 bits (991), Expect = 2.040e-121
Identity = 208/261 (79.69%), Postives = 228/261 (87.36%), Query Frame = 1 
Query:    1 AFVPGTT-----ILPAAASSTRQTAAVAT--ATGHRRCRGCEAVMMASSVAPAPRTKAEKKSEHFKLKEAGMVEFGSGQRVEASIPAAPLESMQEYISDPSRIVFACWEHKDITRMEDGVFRMAFRGQSFLSISIDMSVDIRLWTAEDGTIKCRSVGYSVDDMAKLLGQDFVDTFFLELEGELRVDETVTKVRALTLKNTLLSGDVEVTIGGKMPGLLSATPEPLVRSAALGINNKVLEYVSNTFISTVAGDYRQWARDQK 762
            AFVP  T     + P AAS+  + AAV+T  + GH   R   AV MASSVAPAPRTKAEK SE FKLK+ G+VEFGSGQRVEA+I  APLESMQ YISDPSRIV+ACWEHKDIT M DGVFRMAFRGQSFLSISIDMSVDI+LWTAEDGTI+C+SVGYSVDDMAKLLGQ+FVDTFFLELEGELRV+ETVTKVRAL+LKNT L GDV VTIGGKMPGLLSATPEPLV+SAALGINNKVLEYVSNTF+STVAGDYR+W+RDQ+
Sbjct:   21 AFVPSNTAGGMGLTPIAASAPCRPAAVSTTESAGHPDHRRRMAVTMASSVAPAPRTKAEKTSEQFKLKDGGIVEFGSGQRVEATISGAPLESMQAYISDPSRIVYACWEHKDITDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEGELRVEETVTKVRALSLKNTRLGGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYREWSRDQR 281
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BLAST of mRNA_H-canaliculatus_F_contig1321.2642.1 vs. uniprot
Match: D7FNW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW2_ECTSI)

HSP 1 Score: 377 bits (967), Expect = 7.130e-119
Identity = 193/219 (88.13%), Postives = 207/219 (94.52%), Query Frame = 1 
Query:  106 AVMMASSVAPAPRTKAEKKSEHFKLKEAGMVEFGSGQRVEASIPAAPLESMQEYISDPSRIVFACWEHKDITRMEDGVFRMAFRGQSFLSISIDMSVDIRLWTAEDGTIKCRSVGYSVDDMAKLLGQDFVDTFFLELEGELRVDETVTKVRALTLKNTLLSGDVEVTIGGKMPGLLSATPEPLVRSAALGINNKVLEYVSNTFISTVAGDYRQWARDQK 762
            AV MASSVAPAPRTKAEK SE FKLK+ GMVEFGSGQRVEASI  APLESM EYIS+PSRIV+ACWEHKDI  M DGVFRMAFRGQSFLSISIDMSVDI+LWTAEDGTI+C+SVGYSVDDMAKLLGQ+FVDTFFLELEG+LRV+ETVTKVRAL+LKNT LSGDV VTIGGKMPGLLSATPEPLV+SAALGINNKVLEYVSNTF+STVAGDYR+W+RDQK
Sbjct:    2 AVTMASSVAPAPRTKAEKTSEQFKLKDGGMVEFGSGQRVEASISGAPLESMLEYISEPSRIVYACWEHKDIMDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEGKLRVEETVTKVRALSLKNTRLSGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQK 220
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BLAST of mRNA_H-canaliculatus_F_contig1321.2642.1 vs. uniprot
Match: W7U0S3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0S3_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.750e-18
Identity = 62/218 (28.44%), Postives = 110/218 (50.46%), Query Frame = 1 
Query:  145 TKAEKKSEHFKLKEAGMVEFGSGQRVEASIPAAPLESMQEYISDPSRIVFACWEHKDITRMEDGVFRMAFRGQSFLSISIDMSVDIRLWTA------EDGT-------IKCRSVGYSVDDMAKLLGQDFVDTFFLELEGELRVDETVTKVRALTLKN---TLLSGDVEVTIGGKMPGLLSATPEPLVRSAALGINNKVLEYVSNTFISTVAGDYRQWA 750
            ++A    E F+L   G +EFG+   VE  +   P    +     P R++ A W+ + + R    VFR+  +  SF+ +S+  S+D+RL         E+G        +   S+G+S++ + ++LGQ F ++  +++ G+LR    V   R    K      L G+V     G++P LLS TP P++ SAA+ IN +++ Y    F+  +A D+ +W+
Sbjct:   64 SEASSPKEFFRLAR-GKMEFGTVDEVELLLWDEPALIRRYLTESPDRVLLATWDAELVDRRARDVFRLTTKPMSFVHLSLQPSIDVRLTAIPPEAGREEGAPESGGHLLSVESLGHSMNGLEQILGQRFAESLRIDVTGKLRAH--VPPARPGDSKGRGPVRLVGEVVFVTSGQLPSLLSLTPRPVLESAAIAINRRIMSYAKGKFVKNLAKDFNRWS 278
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BLAST of mRNA_H-canaliculatus_F_contig1321.2642.1 vs. uniprot
Match: A0A252DY18_9NOSO (Uncharacterized protein n=4 Tax=Nostocales TaxID=1161 RepID=A0A252DY18_9NOSO)

HSP 1 Score: 92.0 bits (227), Expect = 2.310e-17
Identity = 56/185 (30.27%), Postives = 97/185 (52.43%), Query Frame = 1 
Query:  196 VEFGSGQRVEASIPAAPLESMQEYISDPSRIVFACWEHKDITRMEDGVFRMAFRGQSFLSISIDMSVDIRLWTAEDGTIKCRSVGYSVDDMAKLLGQDFVDT-FFLELEGELRVDETVTKVRALTLKNTLLSGDVEVTIGGKMPGLLSATPEPLVRSAALGINNKVLEYVSNTFISTVAGDYRQW 747
            + F + Q VE ++P  P+  +Q Y+  P R+V A  +   I ++ + VFR+  R  SF+S+SI  +VD+R+W   +GTI  +SVG       ++LG ++++  F L L+G L   +  T  R        L G  ++ +  ++P   S TP+P++ +   G+   VL  V    +  +  DYR+W
Sbjct:    3 IRFTASQSVEIAVPKQPIP-IQHYLRQPQRLVNALVDTNRIQQLSEEVFRLKMRPLSFMSLSIQPTVDMRVWAESNGTINLQSVG------CEILGFEYINQRFALNLKGNLSPSQHSTGTR--------LQGKADLEVQVELPPPFSFTPKPILEATGNGLLKSVLLTVKQRLLHQLLADYRRW 172
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BLAST of mRNA_H-canaliculatus_F_contig1321.2642.1 vs. uniprot
Match: A0A1Z4IE66_9NOSO (Uncharacterized protein n=3 Tax=Nostocaceae TaxID=1162 RepID=A0A1Z4IE66_9NOSO)

HSP 1 Score: 91.7 bits (226), Expect = 3.140e-17
Identity = 59/193 (30.57%), Postives = 99/193 (51.30%), Query Frame = 1 
Query:  193 MVEFGSGQRVEASIPAAPLESMQEYISDPSRIVFACWEHKDITRMEDGVFRMAFRGQSFLSISIDMSVDIRLWTAEDGTIKCRSVGYSVDDMAKLLGQDFVDT-FFLELEGELRVDETVTKVRALTLKNTLLSGDVEVTIGGKMPGLLSATPEPLVRSAALGINNKVLEYVSNTFISTVAGDYRQWARDQKQE 768
            + +F + Q VE ++P  P+  +Q Y+  P R+V A  +HK I ++ + +FR+  R  SF+S+SI  +VD+R+W   +GTI  RSV        ++ G ++++  F L L G L   ++ T  R        L G  ++ +   +P   S TP+P++ +    +   VL  V    +  +  DYRQW   Q QE
Sbjct:    2 LTKFTASQPVEIAVPDQPIP-IQHYLRQPQRLVNALVDHKRIQQLSEEIFRLKMRPLSFMSLSIQPTVDMRVWAESNGTIYLRSVA------CEIRGFEYINQRFSLNLRGYLSPYQSNTGTR--------LEGRADLEVQVDLPPPFSLTPKPILETTGNSLLKSVLLTVKQRLLHHLLADYRQWVISQTQE 179
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BLAST of mRNA_H-canaliculatus_F_contig1321.2642.1 vs. uniprot
Match: A0A1Z4K5Z5_9CYAN (Uncharacterized protein n=3 Tax=Calotrichaceae TaxID=2661849 RepID=A0A1Z4K5Z5_9CYAN)

HSP 1 Score: 91.7 bits (226), Expect = 3.140e-17
Identity = 58/191 (30.37%), Postives = 100/191 (52.36%), Query Frame = 1 
Query:  199 EFGSGQRVEASIPAAPLESMQEYISDPSRIVFACWEHKDITRMEDGVFRMAFRGQSFLSISIDMSVDIRLWTAEDGTIKCRSVGYSVDDMAKLLGQDFVDT-FFLELEGELRVDETVTKVRALTLKNTLLSGDVEVTIGGKMPGLLSATPEPLVRSAALGINNKVLEYVSNTFISTVAGDYRQWARDQKQE 768
            +F + Q VE  +P  P+  +Q Y+  P R+V+A  ++  I ++ + VFR+  R  SF+S+SI  +VD+R+W    GT+  RSVG       ++LG D+++  F L L+G L   +  T+        T L G  ++ +  ++P     TP+P++ +   G+   VL  V    +  +  DYR+W   Q +E
Sbjct:    4 QFTASQSVEIVVPKQPIP-IQHYLRQPQRLVYALVDNNRIQQISEEVFRLKMRPLSFMSLSIQPTVDMRVWADSQGTLYLRSVG------CEILGVDYINQRFALNLKGYLSPLQHNTE--------TYLQGKADLAVQVELPPPFCFTPKPILEATGNGLLKSVLLTVKQRLLHQLLADYRRWVSVQTKE 179
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1321.2642.1 vs. uniprot
Match: A0A367RC71_9NOSO (Uncharacterized protein n=2 Tax=Nostocaceae TaxID=1162 RepID=A0A367RC71_9NOSO)

HSP 1 Score: 90.5 bits (223), Expect = 7.890e-17
Identity = 56/187 (29.95%), Postives = 97/187 (51.87%), Query Frame = 1 
Query:  202 FGSGQRVEASIPAAPLESMQEYISDPSRIVFACWEHKDITRMEDGVFRMAFRGQSFLSISIDMSVDIRLWTAEDGTIKCRSVGYSVDDMAKLLGQDFVDT-FFLELEGELRVDETVTKVRALTLKNTLLSGDVEVTIGGKMPGLLSATPEPLVRSAALGINNKVLEYVSNTFISTVAGDYRQWARDQ 759
            F + Q VE ++P  P+  +Q Y+  P R+V A  +++ I ++ + VFR+  R  +F+S+SI  +VD+R+W   +G I  RSVG       ++LG ++++  F L L+G L   +  T  R        L G  ++ +  ++P   S TP+P++ +   G+   VL  V    +  +  DYR W   Q
Sbjct:    5 FTASQSVEIAVPQQPIP-IQHYLRQPQRLVNALVDNRRIQQLSEEVFRLKIRPLAFMSLSIQPTVDMRVWAESNGVIYLRSVG------CEILGVEYINQRFALNLQGHLSPYQLSTGTR--------LQGRADLEVQVELPLPFSLTPKPILEATGNGLLKSVLLTVKQRLLHQLLADYRNWVSSQ 176
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1321.2642.1 vs. uniprot
Match: UPI0016845B08 (DUF1997 domain-containing protein n=1 Tax=unclassified Nostoc TaxID=2593658 RepID=UPI0016845B08)

HSP 1 Score: 90.5 bits (223), Expect = 7.890e-17
Identity = 57/190 (30.00%), Postives = 101/190 (53.16%), Query Frame = 1 
Query:  202 FGSGQRVEASIPAAPLESMQEYISDPSRIVFACWEHKDITRMEDGVFRMAFRGQSFLSISIDMSVDIRLWTAEDGTIKCRSVGYSVDDMAKLLGQDFVDT-FFLELEGELRVDETVTKVRALTLKNTLLSGDVEVTIGGKMPGLLSATPEPLVRSAALGINNKVLEYVSNTFISTVAGDYRQWARDQKQE 768
            F + Q V+ ++P  P+  +Q Y+  P R+V A  ++  I ++ + VFR+  R  SF+S+SI  +VD+R+WT  +GTI  RS+        ++LG ++++  F L L+G L   ++ +  R        L G+ ++ +   +P  LS TP+P++ +A   +   VL  V    +  +  DYR W   Q +E
Sbjct:    5 FTASQSVKIAVPHQPIP-IQHYLRQPQRLVNALVDNSRIQQLSEEVFRLKMRPLSFMSLSIQPTVDMRVWTESNGTIYVRSLA------CEILGVEYINQRFSLNLKGYLSPHQSSSGTR--------LEGNADLEVQVDLPPPLSFTPKPILEAAGNSLLKSVLVTVKQRLLHHLLADYRHWVASQMKE 179
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1321.2642.1 vs. uniprot
Match: A0A0T7BVG2_9CYAN (Uncharacterized protein n=1 Tax=Calothrix sp. 336/3 TaxID=1337936 RepID=A0A0T7BVG2_9CYAN)

HSP 1 Score: 90.5 bits (223), Expect = 8.090e-17
Identity = 57/193 (29.53%), Postives = 100/193 (51.81%), Query Frame = 1 
Query:  193 MVEFGSGQRVEASIPAAPLESMQEYISDPSRIVFACWEHKDITRMEDGVFRMAFRGQSFLSISIDMSVDIRLWTAEDGTIKCRSVGYSVDDMAKLLGQDFVDTFF-LELEGELRVDETVTKVRALTLKNTLLSGDVEVTIGGKMPGLLSATPEPLVRSAALGINNKVLEYVSNTFISTVAGDYRQWARDQKQE 768
            + +F + Q VE ++P  P+  +Q Y+  P R+V +  +   I ++ D +FR+  R  +FLS++I  +VD+R+W A + TI  RS+        ++LG ++++  F L L+G L   ET  + R        L G  ++ +   +P   S TP+P++ +A  G+   VL  +    +  +  DYR W   Q QE
Sbjct:    2 LTQFIASQSVEITVPRYPIP-IQHYLRQPQRLVHSLVDSTRIQQLSDEIFRLKMRPLNFLSLTIQPTVDMRVWAANNSTIYLRSLA------CEILGIEYINQRFDLNLKGYLSPYETGQETR--------LKGQADLQVQVDLPPPFSLTPKPIIETAGNGLLKSVLLTIKQRLLHQLLNDYRFWVNSQIQE 179
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1321.2642.1 vs. uniprot
Match: A0A0D6KZH4_9CYAN (Uncharacterized protein n=6 Tax=Nostocales TaxID=1161 RepID=A0A0D6KZH4_9CYAN)

HSP 1 Score: 90.1 bits (222), Expect = 1.070e-16
Identity = 54/183 (29.51%), Postives = 96/183 (52.46%), Query Frame = 1 
Query:  202 FGSGQRVEASIPAAPLESMQEYISDPSRIVFACWEHKDITRMEDGVFRMAFRGQSFLSISIDMSVDIRLWTAEDGTIKCRSVGYSVDDMAKLLGQDFVDT-FFLELEGELRVDETVTKVRALTLKNTLLSGDVEVTIGGKMPGLLSATPEPLVRSAALGINNKVLEYVSNTFISTVAGDYRQW 747
            F + Q VE ++P  P+  +Q Y+  P R+V A  ++  I ++ + VFR+  R  +F+S+S+  +VD+R+W   +GTI  RSVG       ++LG ++++  F L L+G L   +  T         T L G  ++ +  ++P     TP+P++ +   G+   VL  V    +  +  DYR+W
Sbjct:    5 FTASQSVEIAVPKQPIP-IQHYLRQPQRLVHALVDNNRIQQLSEEVFRLKMRPLTFMSLSLQPTVDMRVWAESNGTICLRSVG------CEILGVEYINQRFALNLKGYLSPSQLST--------GTYLQGKADLEVQVELPPPFCFTPKPILETTGNGLLKSVLLTVKQRLLHQLLADYRRW 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1321.2642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG63_9PHAE2.040e-12179.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNW2_ECTSI7.130e-11988.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7U0S3_9STRA1.750e-1828.44Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A252DY18_9NOSO2.310e-1730.27Uncharacterized protein n=4 Tax=Nostocales TaxID=1... [more]
A0A1Z4IE66_9NOSO3.140e-1730.57Uncharacterized protein n=3 Tax=Nostocaceae TaxID=... [more]
A0A1Z4K5Z5_9CYAN3.140e-1730.37Uncharacterized protein n=3 Tax=Calotrichaceae Tax... [more]
A0A367RC71_9NOSO7.890e-1729.95Uncharacterized protein n=2 Tax=Nostocaceae TaxID=... [more]
UPI0016845B087.890e-1730.00DUF1997 domain-containing protein n=1 Tax=unclassi... [more]
A0A0T7BVG2_9CYAN8.090e-1729.53Uncharacterized protein n=1 Tax=Calothrix sp. 336/... [more]
A0A0D6KZH4_9CYAN1.070e-1629.51Uncharacterized protein n=6 Tax=Nostocales TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1321contigH-canaliculatus_F_contig1321:8308..15834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score95.5
Seed ortholog evalue3.3e-17
Seed eggNOG ortholog489825.LYNGBM3L_58630
EggNOG free text desc.Protein of unknown function (DUF1997)
EggNOG OGs1G4ZU@1117,1HAT6@1150,28NJH@1,2ZBKN@2
COG Functional cat.S
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF1997
Ec32 orthologEc-12_003150.1
Exons4
Model size3685
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1321.2642.1prot_H-canaliculatus_F_contig1321.2642.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1321 11222..15723 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929060.0810223-UTR-H-canaliculatus_F_contig1321:8307..112211622929060.0810223-UTR-H-canaliculatus_F_contig1321:8307..11221Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1321 8308..11221 -
1696845664.3045733-UTR-H-canaliculatus_F_contig1321:8307..112211696845664.3045733-UTR-H-canaliculatus_F_contig1321:8307..11221Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1321 8308..11221 -
1622929060.1679351-UTR-H-canaliculatus_F_contig1321:15723..158341622929060.1679351-UTR-H-canaliculatus_F_contig1321:15723..15834Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1321 15724..15834 -
1696845664.3732898-UTR-H-canaliculatus_F_contig1321:15723..158341696845664.3732898-UTR-H-canaliculatus_F_contig1321:15723..15834Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1321 15724..15834 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929060.102666-CDS-H-canaliculatus_F_contig1321:11221..113741622929060.102666-CDS-H-canaliculatus_F_contig1321:11221..11374Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1321 11222..11374 -
1696845664.320083-CDS-H-canaliculatus_F_contig1321:11221..113741696845664.320083-CDS-H-canaliculatus_F_contig1321:11221..11374Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1321 11222..11374 -
1622929060.1199152-CDS-H-canaliculatus_F_contig1321:12383..125151622929060.1199152-CDS-H-canaliculatus_F_contig1321:12383..12515Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1321 12384..12515 -
1696845664.3356268-CDS-H-canaliculatus_F_contig1321:12383..125151696845664.3356268-CDS-H-canaliculatus_F_contig1321:12383..12515Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1321 12384..12515 -
1622929060.135256-CDS-H-canaliculatus_F_contig1321:12947..132081622929060.135256-CDS-H-canaliculatus_F_contig1321:12947..13208Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1321 12948..13208 -
1696845664.3496504-CDS-H-canaliculatus_F_contig1321:12947..132081696845664.3496504-CDS-H-canaliculatus_F_contig1321:12947..13208Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1321 12948..13208 -
1622929060.151783-CDS-H-canaliculatus_F_contig1321:15609..157231622929060.151783-CDS-H-canaliculatus_F_contig1321:15609..15723Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1321 15610..15723 -
1696845664.3624501-CDS-H-canaliculatus_F_contig1321:15609..157231696845664.3624501-CDS-H-canaliculatus_F_contig1321:15609..15723Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1321 15610..15723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1321.2642.1

>prot_H-canaliculatus_F_contig1321.2642.1 ID=prot_H-canaliculatus_F_contig1321.2642.1|Name=mRNA_H-canaliculatus_F_contig1321.2642.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=220bp
MMASSVAPAPRTKAEKKSEHFKLKEAGMVEFGSGQRVEASIPAAPLESMQ
EYISDPSRIVFACWEHKDITRMEDGVFRMAFRGQSFLSISIDMSVDIRLW
TAEDGTIKCRSVGYSVDDMAKLLGQDFVDTFFLELEGELRVDETVTKVRA
LTLKNTLLSGDVEVTIGGKMPGLLSATPEPLVRSAALGINNKVLEYVSNT
FISTVAGDYRQWARDQKQE*
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mRNA from alignment at H-canaliculatus_F_contig1321:8308..15834-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1321.2642.1 ID=mRNA_H-canaliculatus_F_contig1321.2642.1|Name=mRNA_H-canaliculatus_F_contig1321.2642.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7527bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1321:8308..15834- (Hapterophycus canaliculatus Oshoro5f female)
GCCTTCGTTCCGGGCACGACGATCCTTCCCGCTGCGGCCTCCTCGACTCG
TCAGACCGCCGCTGTCGCTACGGCAACGGGACACAGGCGATGCCGCGGGT
GTGAAGCGGTAATGATGGCGAGCTCTGTGGCGCCGGCTCCTCGGACGAAG
GCGGAAAAGAAGAGCGAGCACTTCAAACTAAAGGAAGCGGGTATGGTGGA
GTTCGGGAGCGGACAGCGAGTCGAGGTGCGTCGCGCAGATTTGCCACCCG
CGGAGGGTGGTGGAGGTCGGGTCCGGGTGACGGGTTTCCGGTGTCTGCTG
CGTGGGTTGGACCGAAAGAGGAGTAGTCAGGCGTAGGGCCGGAGCGTGAT
ACGTATACGGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGGAATTTGTCT
CAAGAGATGTTTCATGCGAGACTGCTTGAAAAGGGAAAAAAAGGTGTTCG
AGAGATTTCATGTCGTGACTCGACCCCGGTCAGAGCTTGCCCATGATTTT
GGAACAGGGCAGGAGCCCTCCCCTCTGCCCACTCGCGCGTCCCTGCAAGG
CTCTCCCGCACTAAAGCTGGCGTGTCGTCCTCGGGGTTCTTTGGTTTGGT
TTCATCTTCCTTGCCGCGCGTGAGCCGTGTTGCGTAGCCGATTCGCAAAG
CTTCGCCGTTTCAAACGCGCACATCGATGTTGCAGACGTTCACCGATCGG
ATGATCGGATTACTCATATGTTACCGCTCGACGAGCTCGATCCGCCCGAT
AAATTTTATGTACGTACTTGTGCGTACGCGATCTGACGTGGCGTTTTCAC
CCCTTGTCTCTTGACTCGTGGTTATGAATAGCGCCTGGGCCACCAGCCTT
CCTCTTCGGCGTCCAGTAGAATGACGCATCTCACCTAAAGGCATACCTCA
CTAGCATCTCGCTCTTGATTGAGGACGCTAGACCCTCCGGCGAAAGGACT
CGGGAGTATCTTGTACCGACTGACTAGGACAGCAGGAAGAGTTATGCGGT
GAGATTTAAATTTTTCTGGACGGGCGTCAGGATATGTGTGGGTGATGGCG
CAATCAATGCTGTGCTTTGCTCTGTAGGGCTGCATTTTGGATGGAGTGCG
TTTTGCAAAAGCACGCTTTCAGCAGCTTATTGTGCGTACAAGTAGACACG
CCCAAGATTATTTGCTTCGGGGTACCTACTCCCAGCTTCTTGAGCTCCCT
CGGTTGGGGGAAGCTGCTGTTCACAGCCGTCTGTCCTACAGGGAACGCCC
AGCCTTGCACGCAGCTGTGTGTGATAGCTCAACGCCGGAAAGCTCGCAAG
GTGACCATAGCCCACAAACAAACCATGCCCAACGCTCCAGGAGGCCGACA
AAGTTCGAAGCGAGCACGCTCGAGGGCGCCGTCAAGAGGAGGGGAGGGTC
TCGCTGGTAGCCAAAGGCACACTTTTACCTTCACCTTTACCTTTCCGCCT
CAACCGTAACCTCCGAGCGGCCTCTCTTTTCGCTGATTACCGCAGTGTTC
GAGCGCCGAGTGCGCCGATGCAGTCAGACGTCTTGCTCCCGGCGAGGGTT
CGGACATACGAAAAATAAATGGTGCCCACGGGGTCTCCAAAGCGATAAAA
AGAAAATGAAAGAGAGATAGTCTGGAGCCCTCCGCTCCCTATACACGCTA
CAGTATGTGCGGTAGAAAATAACGAAAACAAATGAAACTGGGCATTCAAC
ATCACCAACCGGGGTTACACACGTGTAACCTGATTCTGTGCCGGCGCCCC
TTTGATGCCCGGGTTATTCCGCGCTGGGTTCTTATCGATCAGGCAAGTAA
ATCTAGTCCTCCTCCCCTCCTCTTCCAGTAGTACACTGCAAAAAACTGCA
AAAAACCGTGGAAAAGAAAGAAACCAGAAACCAGAAGGGGGAAAGACACA
ACAAGGCAGGGGAGATAGAAAGGCAAGAACAACCGAGACAAGTTCCAACC
TGCACACGAACACGCAGCAAACAGACTATGATAGTTCCTACCGGTACAAC
AAGAGCGACATGAGATACGTCATCACCCCGGCGGGTGGTGGTACATTGAT
GCAGCGATGGGGGAGGGAAAAAATAGCAAAATAGGTAAGGAGGAATCAAT
CCGGCACATATCGCGCCACCCGGTGAACTTGTGGAGAGTTTATTAGTGTT
TGAAAGAAAACATAACAACATCGTTGGAACACTTCCTGAGGTACGTCGTG
AGAGGCGTAGTTCGAGGCTACTGTTGAGCTCCAGACAACGAGGGTTCATT
GATGTGGAAGGTTGGGACAAAAGCATGAACAGAAAAAAGTCGTTTGGAGC
CTCCCGTAATTTCATGTACGTACCTCGAATAGCAACGTGTTGTCATGAGA
TATGCCATGCGTTAATCTAGACTCTCGAAAAACATTCCTGTGGTGAGACG
TCAAGACGTCAAGCAAGCAAATGAGTTCACTGCAGTCCAGGATGTTTCTT
CAAAGGAAAGACTGTGGTAGATGTATGATAATAGCAGTAAAGATCCACGT
TTTGCCGCGAAAGCAACCTGTCTACCGTTGGCGAGCTGCGCTGATGCTGA
CAAGCAACAGGGGCCCAAGCATTCGACCTGTTTCGTCCGTACCCTACCCC
CCCGCGTTTCCGCACCCGTACACCAGGCATCAATACCAGCCGCACCCCTG
GAGAGCATGCAGGAGTACATCAGCGACCCCTCTCGCATCGTTTTCGCGTG
CTGGGAGCACAAAGACATCACCCGAATGGAGGACGGAGTGTTTCGGATGG
CGTTCAGGGGCCAGAGCTTCCTGTCAATCTCGATCGACATGTCGGTCGAC
ATTCGGCTGTGGACGGCGGAGGACGGCACCATCAAGTGCCGGTCGGTGGG
CTACTCGGTCGACGACATGGCCAAGCTGTTGGGTCAGGTGAAAACAATCT
GCAACCGTGCGCATCGATGCCCGCGACTCATTGTGAATTTACCTTTCACG
GACGGTCCAACGCCTGTGGTTGTCCGTCCGTCTAGGTTGCACCACGTTTG
TAGATCGGAAGTCGTATCCATTTTTTGGTAGCCGGGTATCTTTTGCTTTT
GCCTGGCGAAAACTCTGTCAGTTCGAAATTTTTCGTCGATCTTTGTTTTA
CATGCCAGAGGTTTAGTGAGCGCTCATCAATATAGAGCAATGAAGCGTTT
GTTCGGAGCTTGAGATACCGCCGTTCAGTTTTGTGTGCGCATGTGGTGGC
ACTTCGAGTGAAGAGATTGTTTTTGATCGTCTTGAACACTGCAAACGACC
CCTGAAGTCTCACATCTCATGCCAGCTACATCTGACTGAGTTTTATCTCC
TCACGCCCTCGCTCGCCAGGATTTCGTGGACACTTTTTTCTTGGAGCTGG
AGGGGGAGCTGAGGGTAGATGAGACGGTAACAAAGGTCAGGGCCCTGACC
CTCAAGAACACGCTCTTGAGTGGGGACGTCGAAGTCACCATCGGCGGCAA
GGTGATTTATTTCCTAGATGACGCGCATACAGGGGCGGGGGCAGAGGCCG
GGGGGCAGATGGGTCTGGCGCTCGGTCTCCCTTTTCGCGAGAACCTTCTT
ATACTGCTCAGCGACTGCTCGAAGAAGTGTTCACAACTGTTCCGGCCCGT
ACAAATATTAATATTTCGAGCTGGCCGAGAACCGCGATTTGTCTATACCG
CGCACCGGCCGTCTGCAGGAGCGGGGCGTCGTGATTTTGTCGCGCGTCGG
CAGAAAGTTGTTCACAAGAGAGGCGACCAGTGCGGTTATTGAACGAGAAG
TTCGTTTTTTCGTTTTTTTCCGACACTTGATTTTCGCTTTTCCTTACGAA
AGTACCTGGAGTAGGCACCCGGAGGGAATGGGATACCAAGAATATATGCT
GGCGGGCGAAAAGCTCGTCTACTGGTTAGCGCTGCTTCTTTTTCGAAGAA
ACGAGGCTTCCTACACACACGTTTGCACTTCCGGTCGTGCCTCGAACGAG
TCTCAAACACGAGATTGAGGGGACTTCAGGCTCGCCTCTGCCAAAGCCGG
CTCTTCCGCTCATTGAGACTCCACGGGAAGGTGTACGCAAGACCCAAATT
AAACATTACTGCTTTTCAAGAGATCAATTCGCCAGTTTGTGTAACGGTCT
CGTTCTTGCTCCGGCGAAAGTTACCATCAAAAGCTCTGCAAAGGCCGGCC
TTGTCCATAGTGGCAAAGGCAGTGCTGAACGACAGCCGAAGACTCTGGGG
CAGGACACACTTTTCACAGAGTAACACTTTTCACAGAGTAACAGGAGAAC
GGGAGGCATAGCCTTGTGCTCGCGTGGCCGCGCCAAAGCTGTTGCGGGTT
GATCCTACAGGCGTGTGCACGTGGAGTTCTTCCTCAATGTTAGCGCAGAG
GACAGCGAAACCTACCTGCCGAGACCTCGTTCCAGTGCTCACCCCCCCCC
CCGTCAATCGGCAATGCTCCTTTTTGTCTTCTCGTTGAACATCTGACCGC
TTGTCCGTAGATGCCGGGCCTCTTGTCTGCCACGCCGGAGCCCCTGGTGC
GTTCTGCTGCCCTGGGAATAAACAACAAGGTGTTGGAATACGTATCGAAC
ACGTTCATCTCCACCGTCGCCGGAGACTACCGACAATGGGCCAGGGACCA
AAAGCAGGAGTAGACGAAGCGCAAGATGCGGGAGCAACAGAAGCCGGAAA
GCAAGAGCCAAGCGAGCTTTTTCGAAGCTGCTTCCGTCTTTTGTCTGTCT
CTCGAGACCTGATCTTTGATTCTTGTTCCCTCTCGATGTAGTTGGTTGTT
GTCAGGAGGTCCCCAGGGACTGCCAGATCCCGCGAAGAAGCTGTCGTAGC
TGAGGGTCATGTTTTTTTAAGAAAACATAGCAATGTTTGTTTGTAGCCTA
CCTCTTGAATCCTCGATGGCTTGCGACCATCGGTCGGGAGGTGGTGTGTG
CTGCACGGTACCACGAATGACGAAAAACGTCGAGAGGCGGGGGGTCTTAA
GCACTGGCTGGAATCCTAGGCAAGGCTGAGCGTGCCGCACCGCTGACTGT
GAGGGCTCACGAAACATGCCTCCTCGTCGAGGCATCAGCTGCGACTGTAG
AGGAGAGGCCGCGGCCCGATGCCCGTCTCGAAGTGATCGTGCAAAGTGCA
TCGGATTTTCTCCGTCGCTTTCCCGTTCAAAGCACGCGAATGCATACGAC
GCGGATGGCCTGCGCCGTGCGACTTTTCGTCACTCGACTTTCATTTCTGC
CGTGCAAAGCTTCGCCTGTCTGTATATAGAAATAAAGTGTTCTTAGATTC
AGGAGTAGCTCTCGTGCGGTGCGGGGATTCGCCGCCCGTAGCCGCGTGAA
CGGGTGAAGAGGACGAATGCCTGCCGTACGTTGGAGACACGGGCAACAGT
GGGGCAGTAGCACGTGACGGGTCGCGCAGCGGATTCTTGCCATGCGCGCT
GGACACCCCGCGCTTGTGGGAAGGAATCGGTGCAACTATCGGGGCGTGCT
GCTGCTCTCGCAGCTCAAGGTTTGTCTTGCCTTTCTGAAGAGAGAAGTTT
TTGGTCGTCGGTCCCGCTATCTTTGCCTCGCGATAGAACCACCGGGACCA
GAAACGTTCTTCGAGTTTTGAAAACGTTCTGCGAGTTTTGACGAATCGCA
GAGCGCGTGTCGTTCACTGGATACGTTTCGGGGGACGACTTGTACGGCTT
TTGTGCCTTGTTGTCGGGAACAGGGGGGCACATGCTCAGTTTAGACACAG
GTGTCGGGTCTGCGCTCTTTTGCGAAGACGCGATTCGTGCTTTGGGTGGT
AAGATTGTTCGTGGGCGTTCCTACTCGGCTATGCGGTTCGTCCAGCCTCG
GTGCGATTAGGAGTTCAGAGTACGTACGTACAACCTGATCTGGTGATTTT
TTGCCTGCTCGTTTCTGGCTGCGGGTGATCGAGACGCGCCCGTGTTGGAG
GGTGCGAACAGATCGATAAGAGCGGGAAGCCATTTCTACCGAGCCTTCGG
GGGTGCAGCAGGCGTTTGTGTACCTCTCGGCAACTTGCTGAGTGGCCCGA
CGTTCGAAGGATGAGTTACGGATGAGGATGCAGATTTATGCAGCAGCCCC
TCTTTCGAGAAATGGAGTATCTGATGGTGCGGTCGCCGATGTAAGGTTTC
CACATAATCTCAGTGCGGAGACGGGTGTGTGATGCATGAAGAGAGGTGGT
CCCTCAGGAGTGTTTCCAGGTGGGGACTCCTCAAGTTGCAGCGTGGGGGG
GGTGTACAAGTATCTCCTCGGTGGAGCACAAAAGCCTATGAGTCCAGACC
GATATCCATATTGCCTACCTATGTTGTTGCCAAGTTGGGTCCTTGGTCGC
AGCTCTTATGATGAAGTCTGCGTCCGTGCAGGGGCGCTGTGTTGCGGAGA
CTGTCATGAGGAAGCCATGCGTGTGAGTGGAAAGTCGACTCCGCTTGCGA
CCGGTAGCGTATGGGCGAAGTCGCGGGGTTCATTGTTCCTGTCTCCGTAA
GCTTTGGGAAGGTAATCCGAATACCTCTTGTCTATGAAAATCACGCCTGC
GCCTCCCCCAGAGACGCTGGCTTGCGGAGTAGGTCTGTGATGCTGTCTTC
GAACCAGCCTCGACGGCTTTTGTTTTGGAGAGGGTGGCCCAGAGTTTCTT
CCGCATGTCCGTTTTGTCATCTCGTCCTCATCTTGCTATGCACGTGTACA
GAAGTGTGTCTCGTCTCGAGGAGCGAAAGACGGTTGCGTCGAGAGAGCGA
GGGATTACGGTGGGGTGACTGTCGAGTGATCCTCGGAGGGTGATCGACCT
CCTTCATTACATTCGTGTGTTGGGATGTTGTCGTTTTGTTGGCGATTTAC
GTTGCGATAAATTTCCTTTTCGTTGGAGGCCCGGCGTTGACTATATCTCT
TGGAGGAGCACTTCAAAGCTGAGTGTAGAACTGTTTGTCTTCGACTGATG
GAAAAAATGTGTACCGCAGTCAAATGCCGGCGCTGGATGATCAGCGACGG
AATCTTGACGGCCTGGCTTTGCTTCAACTCGCTGGGAGTTGTTTTTCTCG
CCGCCGAAGTTAGATCGTCCGATGGTGTGAGAAGAGGTAGATTGTGGCCT
TCCCTCCGTGCAACGTACCGCGATGGATCGACCCGTCTCGCTGCTTGGAA
ACGACGATTGAATGCTTCCTGCCATCGCACGCTCTCGAGTCGTGGCAATA
TTGTTTCTTTGGGGAACGGAGGGCGACACTTAGTTGCTGATGATGTGCCC
ATAATTGCTATTATCGATAGTTACAGGTGACGCTCTCTCTTTTGATAGAA
ACCCGAGCGATGCGCGTGCGGTCAGCGGGGACGTTGTCGCGTGCGCGACG
GAGGTCATTCCCGACGACTGACTCGCTCCCCGTCGGCACGTCGTCAAGAA
AAACTTCACCGATACATTGTAGCCCACATGGTTTTCTTCAGAGTTGTGTG
CATATAGACTAGGTCGTATGCCTGACGTGTGTCCCAGCCTTTTTATCCGG
CATATTTTTGTGTTAGACTAGCCTCGTCCTCCTTCCTTCACGGTTTCCGG
GTGGTGCAACGCTATATTAATGCTGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1321:8308..15834-

>mRNA_H-canaliculatus_F_contig1321.2642.1 ID=mRNA_H-canaliculatus_F_contig1321.2642.1|Name=mRNA_H-canaliculatus_F_contig1321.2642.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1320bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1321:8308..15834- (Hapterophycus canaliculatus Oshoro5f female)
ATGATGGCGAGCTCTGTGGCGCCGGCTCCTCGGACGAAGGCGGAAAAGAA
GAGCGAGCACTTCAAACTAAAGGAAGCGGGTATGGTGGAGTTCGGGAGCG
GACAGCGAGTCGAGATGATGGCGAGCTCTGTGGCGCCGGCTCCTCGGACG
AAGGCGGAAAAGAAGAGCGAGCACTTCAAACTAAAGGAAGCGGGTATGGT
GGAGTTCGGGAGCGGACAGCGAGTCGAGGCATCAATACCAGCCGCACCCC
TGGAGAGCATGCAGGAGTACATCAGCGACCCCTCTCGCATCGTTTTCGCG
TGCTGGGAGCACAAAGACATCACCCGAATGGAGGACGGAGTGTTTCGGAT
GGCGTTCAGGGGCCAGAGCTTCCTGTCAATCTCGATCGACATGTCGGTCG
ACATTCGGCTGTGGACGGCGGAGGACGGCACCATCAAGTGCCGGTCGGTG
GGCTACTCGGTCGACGACATGGCCAAGCTGTTGGGTCAGGCATCAATACC
AGCCGCACCCCTGGAGAGCATGCAGGAGTACATCAGCGACCCCTCTCGCA
TCGTTTTCGCGTGCTGGGAGCACAAAGACATCACCCGAATGGAGGACGGA
GTGTTTCGGATGGCGTTCAGGGGCCAGAGCTTCCTGTCAATCTCGATCGA
CATGTCGGTCGACATTCGGCTGTGGACGGCGGAGGACGGCACCATCAAGT
GCCGGTCGGTGGGCTACTCGGTCGACGACATGGCCAAGCTGTTGGGTCAG
GATTTCGTGGACACTTTTTTCTTGGAGCTGGAGGGGGAGCTGAGGGTAGA
TGAGACGGTAACAAAGGTCAGGGCCCTGACCCTCAAGAACACGCTCTTGA
GTGGGGACGTCGAAGTCACCATCGGCGGCAAGGATTTCGTGGACACTTTT
TTCTTGGAGCTGGAGGGGGAGCTGAGGGTAGATGAGACGGTAACAAAGGT
CAGGGCCCTGACCCTCAAGAACACGCTCTTGAGTGGGGACGTCGAAGTCA
CCATCGGCGGCAAGATGCCGGGCCTCTTGTCTGCCACGCCGGAGCCCCTG
GTGCGTTCTGCTGCCCTGGGAATAAACAACAAGGTGTTGGAATACGTATC
GAACACGTTCATCTCCACCGTCGCCGGAGACTACCGACAATGGGCCAGGG
ACCAAAAGCAGGAGTAGATGCCGGGCCTCTTGTCTGCCACGCCGGAGCCC
CTGGTGCGTTCTGCTGCCCTGGGAATAAACAACAAGGTGTTGGAATACGT
ATCGAACACGTTCATCTCCACCGTCGCCGGAGACTACCGACAATGGGCCA
GGGACCAAAAGCAGGAGTAG
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