mRNA_H-canaliculatus_F_contig13205.2641.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13205.2641.1
Unique NamemRNA_H-canaliculatus_F_contig13205.2641.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13205.2641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13205contigH-canaliculatus_F_contig13205:2240..2917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size630
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13205.2641.1prot_H-canaliculatus_F_contig13205.2641.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13205 2297..2857 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929059.8099945-UTR-H-canaliculatus_F_contig13205:2239..22961622929059.8099945-UTR-H-canaliculatus_F_contig13205:2239..2296Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13205 2240..2296 -
1696845664.1896772-UTR-H-canaliculatus_F_contig13205:2239..22961696845664.1896772-UTR-H-canaliculatus_F_contig13205:2239..2296Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13205 2240..2296 -
1622929059.8551235-UTR-H-canaliculatus_F_contig13205:2857..29171622929059.8551235-UTR-H-canaliculatus_F_contig13205:2857..2917Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13205 2858..2917 -
1696845664.2267687-UTR-H-canaliculatus_F_contig13205:2857..29171696845664.2267687-UTR-H-canaliculatus_F_contig13205:2857..2917Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13205 2858..2917 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929059.8215477-CDS-H-canaliculatus_F_contig13205:2296..26451622929059.8215477-CDS-H-canaliculatus_F_contig13205:2296..2645Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13205 2297..2645 -
1696845664.2023103-CDS-H-canaliculatus_F_contig13205:2296..26451696845664.2023103-CDS-H-canaliculatus_F_contig13205:2296..2645Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13205 2297..2645 -
1622929059.8387234-CDS-H-canaliculatus_F_contig13205:2693..28571622929059.8387234-CDS-H-canaliculatus_F_contig13205:2693..2857Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13205 2694..2857 -
1696845664.2145593-CDS-H-canaliculatus_F_contig13205:2693..28571696845664.2145593-CDS-H-canaliculatus_F_contig13205:2693..2857Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13205 2694..2857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13205.2641.1

>prot_H-canaliculatus_F_contig13205.2641.1 ID=prot_H-canaliculatus_F_contig13205.2641.1|Name=mRNA_H-canaliculatus_F_contig13205.2641.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=171bp
MRLKSKNILESKAQLCVSVGFLLEIINDTKGYPPLSQNNRIFVECLAVRV
QAVQNVWSMFVPRCAVGHHRKRLTRPFVFCGTRGGGARLPRARARAFVGR
RQVSLEYYRVESADPPRGPSLLSREFFRMREKAGFRSLRTGTSQACWMRL
AIWNRGAVSSIRIASGLPSP*
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mRNA from alignment at H-canaliculatus_F_contig13205:2240..2917-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13205.2641.1 ID=mRNA_H-canaliculatus_F_contig13205.2641.1|Name=mRNA_H-canaliculatus_F_contig13205.2641.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13205:2240..2917- (Hapterophycus canaliculatus Oshoro5f female)
GCTCCCTCACCAGCGACACCGCAGCCACCTGCGTGAGATGTCGGAGGAGT
GGTTGTTGGTATGCGCCTCAAGAGCAAAAACATACTTGAATCAAAAGCAC
AATTGTGTGTAAGCGTCGGCTTTTTACTAGAAATAATAAACGACACCAAA
GGATACCCTCCGCTGAGTCAAAATAATAGGATTTTCGTTGAATGCCTTGC
AGTGAGGGTTCAGGCTGTGCAAAAGTTTGGTTAATTCCGTTTATATTCTT
AAGAGCGCAGACGTACGTGAAGCGTGTGGTCCATGTTTGTCCCGAGGTGC
GCGGTTGGTCATCACAGGAAGCGATTAACCCGGCCTTTCGTTTTTTGCGG
GACGAGAGGGGGGGGGGCACGCTTGCCAAGAGCGAGAGCCCGTGCTTTCG
TTGGGAGAAGGCAGGTCAGTCTGGAGTACTATCGGGTCGAGTCCGCGGAT
CCCCCGAGAGGTCCGAGCCTTTTGAGCCGGGAGTTCTTTCGGATGCGGGA
GAAAGCTGGCTTTCGCTCCCTGCGCACTGGTACATCGCAAGCATGCTGGA
TGCGTTTGGCGATCTGGAACCGTGGCGCCGTCTCTTCTATCCGGATTGCG
TCGGGATTGCCATCCCCGTGACCGCGGGTTCGGATGCCGGCGAGATACAT
GTACTTTCTGAGCTTCTCACGTCGAGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13205:2240..2917-

>mRNA_H-canaliculatus_F_contig13205.2641.1 ID=mRNA_H-canaliculatus_F_contig13205.2641.1|Name=mRNA_H-canaliculatus_F_contig13205.2641.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1026bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13205:2240..2917- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCCTCAAGAGCAAAAACATACTTGAATCAAAAGCACAATTGTGTGT
AAGCGTCGGCTTTTTACTAGAAATAATAAACGACACCAAAGGATACCCTC
CGCTGAGTCAAAATAATAGGATTTTCGTTGAATGCCTTGCAGTGAGGGTT
CAGGCTGTGCAAAAATGCGCCTCAAGAGCAAAAACATACTTGAATCAAAA
GCACAATTGTGTGTAAGCGTCGGCTTTTTACTAGAAATAATAAACGACAC
CAAAGGATACCCTCCGCTGAGTCAAAATAATAGGATTTTCGTTGAATGCC
TTGCAGTGAGGGTTCAGGCTGTGCAAAACGTGTGGTCCATGTTTGTCCCG
AGGTGCGCGGTTGGTCATCACAGGAAGCGATTAACCCGGCCTTTCGTTTT
TTGCGGGACGAGAGGGGGGGGGGCACGCTTGCCAAGAGCGAGAGCCCGTG
CTTTCGTTGGGAGAAGGCAGGTCAGTCTGGAGTACTATCGGGTCGAGTCC
GCGGATCCCCCGAGAGGTCCGAGCCTTTTGAGCCGGGAGTTCTTTCGGAT
GCGGGAGAAAGCTGGCTTTCGCTCCCTGCGCACTGGTACATCGCAAGCAT
GCTGGATGCGTTTGGCGATCTGGAACCGTGGCGCCGTCTCTTCTATCCGG
ATTGCGTCGGGATTGCCATCCCCGTGACGTGTGGTCCATGTTTGTCCCGA
GGTGCGCGGTTGGTCATCACAGGAAGCGATTAACCCGGCCTTTCGTTTTT
TGCGGGACGAGAGGGGGGGGGGCACGCTTGCCAAGAGCGAGAGCCCGTGC
TTTCGTTGGGAGAAGGCAGGTCAGTCTGGAGTACTATCGGGTCGAGTCCG
CGGATCCCCCGAGAGGTCCGAGCCTTTTGAGCCGGGAGTTCTTTCGGATG
CGGGAGAAAGCTGGCTTTCGCTCCCTGCGCACTGGTACATCGCAAGCATG
CTGGATGCGTTTGGCGATCTGGAACCGTGGCGCCGTCTCTTCTATCCGGA
TTGCGTCGGGATTGCCATCCCCGTGA
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