mRNA_H-canaliculatus_F_contig132.2629.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig132.2629.1
Unique NamemRNA_H-canaliculatus_F_contig132.2629.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig132.2629.1 vs. uniprot
Match: A0A6H5L1H5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H5_9PHAE)

HSP 1 Score: 485 bits (1248), Expect = 2.440e-169
Identity = 260/365 (71.23%), Postives = 281/365 (76.99%), Query Frame = 1
Query:    4 KVFALFCKYDTAQRGCLSLANVYKMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEEDVLRFCFFILDREKNGYIEKDEMRMLVNMLYNIDPVKGPTGNTKIAFEKLSVQQDGKIEFWEFELFHKAFPSLFFPAFRLQ------------VKMMQAVWGESWWGRKXXXXXXXXXXXXXXXXXDRLADSNRLEAMRQRRIKRKMGACKYFCWPCGRAEYDKMFPRANIVVVDPAAEEAERLRKL---------------------------AEDKARLQREMEARYLHPETQEYKKFREKLDAKKKKEQSRRDKKPQVDSRRPVKREKNANDRRLRLENRRIKDGRVPTAGGAFG 981
            KVF LFCKYDTAQRGCLSLANVYKM+GEKKSIFGDSL+ELIGIRDFQELTFSEWLDAITTFCLFEEE++LRFCFFILDREKNGYIEK+EMRMLVNMLYNIDPVKGPTGNTK+AF+KLSVQQDGKIEFWEFELF+KAFPSL FPAFRLQ            VKMMQAVWGE+WWGRK                 DRLAD+NRLEAMRQRRIK KMGACKYFCWPCGRAEYDKMFPR N+VV DP A+EAERLRK+                           AE+KARLQREMEARYL+ ETQEYKKFREKLDAKK+K              R V    NA++RRLRLENRR+K+GR+P  GGAFG
Sbjct:   32 KVFRLFCKYDTAQRGCLSLANVYKMIGEKKSIFGDSLYELIGIRDFQELTFSEWLDAITTFCLFEEEEILRFCFFILDREKNGYIEKEEMRMLVNMLYNIDPVKGPTGNTKVAFDKLSVQQDGKIEFWEFELFNKAFPSLLFPAFRLQSTNPPAALTQTKVKMMQAVWGEAWWGRKKRKVQDRLELRRKHEEEDRLADANRLEAMRQRRIKSKMGACKYFCWPCGRAEYDKMFPRTNVVVADPGADEAERLRKVLRMIPPEDVNMREDRKRGGPAYITPAQAEEKARLQREMEARYLNYETQEYKKFREKLDAKKEKXXXXXXXXXXXXXXRSVXXXNNADERRLRLENRRVKNGRLPPVGGAFG 396          
BLAST of mRNA_H-canaliculatus_F_contig132.2629.1 vs. uniprot
Match: D7G2J3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J3_ECTSI)

HSP 1 Score: 439 bits (1128), Expect = 7.110e-152
Identity = 213/242 (88.02%), Postives = 223/242 (92.15%), Query Frame = 1
Query:    4 KVFALFCKYDTAQRGCLSLANVYKMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEEDVLRFCFFILDREKNGYIEKDEMRMLVNMLYNIDPVKGPTGNTKIAFEKLSVQQDGKIEFWEFELFHKAFPSLFFPAFRLQVKMMQAVWGESWWGRKXXXXXXXXXXXXXXXXXDRLADSNRLEAMRQRRIKRKMGACKYFCWPCGRAEYDKMFPRANIVVVDPAAEEAERLRKL 729
            KVF LFCKYDTAQRGCLSLANVYKMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEE++LRFCFFILDREKNGYIEKDEMRMLVNMLYNIDPVKGPTGNTK+AF+KLSVQQDGKIEFWEFELF+KAFPSLFFPAFRLQVKMMQAVWGE+WWGRK                 DRLAD+NRLEAMRQRRIKRKMGACKYFCWPCGRAEYDKMFPRAN+VV DPAA+EAERLRK+
Sbjct:   32 KVFRLFCKYDTAQRGCLSLANVYKMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEEEILRFCFFILDREKNGYIEKDEMRMLVNMLYNIDPVKGPTGNTKVAFDKLSVQQDGKIEFWEFELFNKAFPSLFFPAFRLQVKMMQAVWGEAWWGRKKRNFQDRLELRRKHEEEDRLADANRLEAMRQRRIKRKMGACKYFCWPCGRAEYDKMFPRANVVVADPAADEAERLRKV 273          
BLAST of mRNA_H-canaliculatus_F_contig132.2629.1 vs. uniprot
Match: A0A835ZCW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCW1_9STRA)

HSP 1 Score: 222 bits (566), Expect = 8.760e-66
Identity = 126/327 (38.53%), Postives = 185/327 (56.57%), Query Frame = 1
Query:    4 KVFALFCKYDTAQRGCLSLANVYKMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEEDVLRFCFFILDREKNG------------------YIEKDEMRMLVNMLYNIDPVKGPTGNTK------------------------------IAFEKLSVQQDGKIEFWEFELFHKAFPSLFFPAFRLQVKMMQAVWGESWWGRKXXXXXXXXXXXXXXXXXDRLADSNRLEAMRQRRIKRKMGACKYFCWPCGRAEYDKMFPR-------ANIVVVDPAAEEAERLRKLAEDKARLQREMEARYLHPETQEYKKFREKL 819
            + F +F  +DTA++G + LA  YKM+GE+KS+FGDS+F+L+G+RD +E+ F EWL AI T+CLF+E DVL++CF+ILDREK                    YI  DE ++L ++LYN+D  + P+GNT+                              IA  K+ VQ DGKIEFWE ELF+KAFPSL +PAFR+QVKM Q VWGE WW R+                    AD  R      +R++RK+G  +++C P     Y ++ P        A +  +  AA++ E   +L+  KA+L+R M+ + L PET+EY++++E++
Sbjct:   31 QAFDIFQAHDTAKKGTIPLATFYKMIGERKSMFGDSIFDLLGVRDTREIDFGEWLQAIVTYCLFDESDVLKYCFYILDREKQQLRKGAVGGAKADAFIKERYIVMDESKLLADLLYNVDCKRRPSGNTRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXRIALNKVPVQADGKIEFWELELFNKAFPSLLYPAFRMQVKMTQLVWGEDWWDRRRRMLNEDVATRKELERLALEADKKRRRKAYDQRVRRKLGVARFYCCPWAVDRYQELHPMDPPPLTPAQLAAM-AAAQKTEA--QLSAAKAKLKRVMDMQMLIPETEEYRRYKERV 354          
BLAST of mRNA_H-canaliculatus_F_contig132.2629.1 vs. uniprot
Match: A0A7S2C3E2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3E2_9STRA)

HSP 1 Score: 194 bits (494), Expect = 3.980e-56
Identity = 99/267 (37.08%), Postives = 164/267 (61.42%), Query Frame = 1
Query:   10 FALFCKYDTAQRGCLSLANVYKMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEEDVLRFCFFILDREKNGYIEKDEMRMLVNMLYNIDPVKGPTGNTKIAFEKLSVQQDGKIEFWEFELFHKAFPSLFFPAFRLQVKMMQAVWGESWWGRKXXXXXXXXXXXXXXXXXDRLADSNRLEAMRQRRIKRKMGACKYFCWPCGRAEYDKMFPRANIVVVDPAAEEAERLRKLAEDKARLQREM----EARYLHPETQEY 798
            ++ F   D    G + +++ YK   EK+SIFGD++FELI       L F E++ A+ T+CLFE++++LRFCF+I D++KNGYIE++E+R +VN+LY + P     GNTK+A ++L    DGK++F EF+ F+++FP+LF+PAFR+QV M+  + G++WW +K                  +  +  RL  M+QR+I++KMG  +YFC    R +Y+ +FP     + D   +  +   +LAE++A+ + +     E    +PET+E+
Sbjct:   32 WSAFRSIDKKLTGSVDISDFYKFFEEKRSIFGDAIFELIDCNQSGSLDFGEFVHAVVTYCLFEQDEMLRFCFYIFDKDKNGYIEQEELRWMVNILYGLGPTDKLKGNTKVAVDRLDFNDDGKVDFKEFKEFNRSFPALFYPAFRIQVNMINLIAGDAWWEKKKRWLQDEKDRKRAREEYSKRKEKARLRKMQQRKIRKKMGYVRYFCCFLERKKYELLFP-----IEDSDNKNEKTAAQLAEERAKAREKAKHLAELAIKNPETEEW 293          
BLAST of mRNA_H-canaliculatus_F_contig132.2629.1 vs. uniprot
Match: A0A6S8V9R4_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8V9R4_9STRA)

HSP 1 Score: 173 bits (439), Expect = 5.410e-48
Identity = 99/261 (37.93%), Postives = 150/261 (57.47%), Query Frame = 1
Query:    1 MKVFALFCKY----DTAQRGCLSLANVYKMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEEDVLRFCFFILDREKNGYIEKDEMRMLVNMLYNIDPVKGPTGNTKIAFEKLSVQQDGKIEFWEFELFHKAFPSLFFPAFRLQVKMMQAVWGESWWGRKXXXXXXXXXXXXXXXXXDRLADSNRLEAMRQRRIKRKMGACKYFCWPCGRAEYDKMFPRANIVVVDPAAEEAERLRKLAEDKARLQREMEAR 771
            +K  A+F ++    D    G +++   Y +  EK+SIFGD +F+L  I   +EL F E+L A+ T+CLFE +++LRFCF+I DR+KNGYI K+E+ +++ +LY+I P    +GNT+ A E L    D K+++ EF  FH  FP+LF+PAFR+Q  M+    G+ WW +K                     +  RL  +R++RI++KMG  +Y   P  RA + K+FP     V D  AE+     +L   KA+ QRE+E R
Sbjct:   25 VKELAVFWRHFREGDKEMLGVIAIDQFYLLFHEKRSIFGDGIFDLCDIHHTEELDFGEYLVAVITYCLFEPQEILRFCFYIFDRDKNGYIMKEELELMLRVLYHIVPPNDFSGNTRNALELLDFNDDEKVDWQEFNRFHVLFPALFYPAFRIQQTMITQTMGQRWWDKKKRYLHEEKVRRDMIEQLAARKEHARLLKLREKRIRKKMGLLRYMFCPAQRAAFRKLFP-----VDDAQAEKTLSEAELQVQKAK-QREVERR 279          
BLAST of mRNA_H-canaliculatus_F_contig132.2629.1 vs. uniprot
Match: A0A7S2D7S8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D7S8_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.020e-41
Identity = 89/260 (34.23%), Postives = 148/260 (56.92%), Query Frame = 1
Query:   16 LFCKYDTAQRGCLSLANVY-KMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEEDVLRFCFFILDREKNGYIEKDEMRMLVNMLYNIDPVKGPTGNTKIAFEKLSVQQDGKIEFWEFELFHKAFPSLFFPAFRLQVKMMQAVWGESWWGRKXXXXXXXXXXXXXXXXXDRLADSNRLEAMRQRRIKRKMGACKYFCWPCGRAEYDKMFPRANIVVVDPAAEEAERLRKLAEDKARLQREMEARYLHPETQ 792
            +F K D  + G ++  + + K++ E +++FG+++FELI   D  +L F E+L  + T+C F+E ++L+FCFFI DREKNGYI++DE++  V++L+N   V     N + AF+ +  Q DGK +F EF+  +K FP++ +PAFR+Q  MM  + GE WW +K                     + N  E  RQ++I+  MG  KY+  P  R+ +D+ +P  ++  ++    +A+   KL E+  R Q+E   R  +  TQ
Sbjct:   32 VFRKCDYDRIGIVATEDFFTKIVQEGRNMFGNAIFELIDAEDPDKLEFGEFLQGVVTYCCFDELEILQFCFFIFDREKNGYIDQDELKFFVDVLHNEQQV----ANVRTAFQSIKFQTDGKFDFPEFQKLNKDFPTVLYPAFRMQQNMMLNIMGEDWWRQKKLMLTLDKEDQRSAHARMMRREFNNRERTRQKQIRHDMGPVKYYLQPSKRSMFDEKYPPMSMEELELI--KAKEREKLEEELIRKQKEXXKRLENELTQ 285          
BLAST of mRNA_H-canaliculatus_F_contig132.2629.1 vs. uniprot
Match: A0A2R5GWK3_9STRA (Calmodulin-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWK3_9STRA)

HSP 1 Score: 150 bits (378), Expect = 8.660e-39
Identity = 89/242 (36.78%), Postives = 124/242 (51.24%), Query Frame = 1
Query:    4 KVFALFCKYDTAQRGCLSLANVYKMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEEDVLRFCFFILDREKNGYIEKDEMRMLVNMLYNIDPVKGPTGNTKIAFEKLSVQQDGKIEFWEFELFHKAFPSLFFPAFRLQVKMMQAVWGESWWGRKXXXXXXXXXXXXXXXXXDRLADSNRLEAMRQRRIKRKMGACKY-FCWPCGRAEYDKMFPRANIVVVDPAAEEAERLRK 726
            K + +F KYD    G + +   Y+++ E++++FGDSLFEL+ I     L FSE++  I T+ LF   D+L+FCFF+ D++KNGYI+ DE+  LV ML+       PT N + A        DGKI+F EF+  +  FP L  PAFR+Q  MM    GE WW  K                  RL +  R    +QR+++ KMG   Y FC           F +   V+   AAEEA R  K
Sbjct:   28 KFWRIFQKYDRDHGGTIDVEEFYRLIEEERTVFGDSLFELVDIDCSGTLDFSEFVQTIATYALFARVDILKFCFFVFDKDKNGYIDSDELHALVEMLHG----NNPTSNCRTALANFDTNSDGKIDFEEFQAMNVRFPQLLHPAFRMQQNMMINTLGEQWWNGKKLMLQEERNADNALEERLRLKELQRQHRNQQRQVRHKMGFFGYYFC-----------FFKRGKVLAQIAAEEAIRAEK 254          
BLAST of mRNA_H-canaliculatus_F_contig132.2629.1 vs. uniprot
Match: A0A8J2S6B5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S6B5_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.340e-37
Identity = 81/243 (33.33%), Postives = 140/243 (57.61%), Query Frame = 1
Query:   16 LFCKYDTAQRGCLSLANVY-KMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEEDVLRFCFFILDREKNGYIEKDEMRMLVNMLYNIDPVKGPTGNTKIAFEKLSVQQDGKIEFWEFELFHKAFPSLFFPAFRLQVKMMQAVWGESWWGRKXXXXXXXXXXXXXXXXXDRLADSNRLEAMRQRRIKRKMGACKYFCWPCGRAEYDKMFP--RANIVVVDPAAEEAERLRKLAE 735
            +F K+D  +R  +++++ Y K++   ++IF D LF+LI   D + + F E++ A+TT+C FE  +VL+FCFF+ DR+K G+I ++EMR+ V+ ++  +     + N + A + L  ++DGK +F EF+  H  +PS+ FPAFRLQ  MMQA+ GE +W  K                     +       R+ +++R MG+ KY+  P  RA+Y +++P  +   V+ +     A+R ++LAE
Sbjct:   40 MFKKHDKERRSIIAISDFYDKIVFVPRTIFCDGLFDLIEAADSESIDFGEFVAAVTTYCFFEIPEVLKFCFFVFDRDKKGFITQEEMRLFVDAMHGNEM----STNVEFALDNLKYRKDGKFDFEEFKGMHHLYPSVLFPAFRLQNAMMQAMGGEQFWESKKLELSMQKEDERKREANREAREKAEAYKYREDQVRRHMGSIKYYLMPKNRAKYYEVYPLPKKYRVMEEQERARAKREKQLAE 278          
BLAST of mRNA_H-canaliculatus_F_contig132.2629.1 vs. uniprot
Match: A0A8K1C2H3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2H3_PYTOL)

HSP 1 Score: 141 bits (355), Expect = 9.320e-36
Identity = 83/229 (36.24%), Postives = 122/229 (53.28%), Query Frame = 1
Query:    7 VFALFCKYDTAQRGCLSLANVYKMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEEDVLRFCFFILDREKNGYIEKDEMRMLVNMLYNIDPVKGPTGNTKIAFEKLSVQQDGKIEFWEFELFHKAFPSLFFPAFRLQVKMMQAVWGESWWGRKXXXXXXXXXXXXXXXXX---DRLA---DSNRLEAMRQRRIKR-------KMGACKYFCWPCGRAEY 654
            ++A F K D  + G +  A  YK + EK S FGD++F LI   +  +L FSE+++A+  FC+  +ED+L+FCF + D +KNG IE  E+  L+ ML+      G T N K AF+      DGKI+F EF++ +  FPSL +PAFR+Q  M     G SWW +K                    D+     D +  EA R+ ++KR       +MG C ++C PC R +Y
Sbjct:   33 LYAKFLKCDKDKGGTIDRAEFYKSIDEKDSEFGDAIFALIDEDNSGQLDFSEYVEALGKFCVLSKEDMLKFCFNVFDADKNGTIEGPELTHLMEMLH----ADGQTSNMKQAFKSFDFNDDGKIDFQEFQMLNAQFPSLLYPAFRIQQNMRIYTMGVSWWRKKIEELHHEKAEQLAKLQAMGEDKAKGDNDEDAKEAARRAKLKRQEQAVRIRMGCCMFYCCPCRRHKY 257          
BLAST of mRNA_H-canaliculatus_F_contig132.2629.1 vs. uniprot
Match: A0A1V9YZW5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YZW5_9STRA)

HSP 1 Score: 134 bits (337), Expect = 5.180e-33
Identity = 81/246 (32.93%), Postives = 131/246 (53.25%), Query Frame = 1
Query:   34 TAQRGCLSLANVYKMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEEDVLRFCFFILDREKNGYIEKDEMRMLVNMLYNIDPVKGPTGNTKIAFEKLSVQQDGKIEFWEFELFHKAFPSLFFPAFRLQVKMMQAVWGESWWGRKXXXXXXXXXXXXXXXXXDRLADSNRLEAMRQRRIKRKMGACKYFCWPCGRAEYDKMFPRANIVVVDPAAEEAERLRKLAEDKARLQREMEAR 771
            T+  G ++    ++   E+++  GD++F LI I    EL FSE+++A+  FCL   E++L+FCFF+ D++KNG IE  E+  L+ +L+     +G T N K A        DGK++F EFEL H+ FP+L +P FRLQ  +     G SWW RK                 +R  D    +  +++  ++KMG  +Y+  PC R++Y         +  +   EEA++ R++   K +L+  MEAR
Sbjct:   60 TSGSGTINRDEFFRSCHEERTAVGDAVFALIDIDGSGELDFSEYVEALGAFCLLNPEEILKFCFFVFDQDKNGTIENAELDSLLEILH----AEGGTSNMKEALASFHFHADGKLDFAEFELLHQQFPTLLYPVFRLQENLKLYTMGSSWW-RKRVELLQAIKDEKDRPEGERKEDIAAKKKAKRQLARKKMGCFRYYFCPCRRSKY---MVEETAISEEALIEEAKQ-REIEAQKKKLEEAMEAR 296          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig132.2629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1H5_9PHAE2.440e-16971.23EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7G2J3_ECTSI7.110e-15288.02EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835ZCW1_9STRA8.760e-6638.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2C3E2_9STRA3.980e-5637.08Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6S8V9R4_9STRA5.410e-4837.93Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S2D7S8_9STRA2.020e-4134.23Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2R5GWK3_9STRA8.660e-3936.78Calmodulin-like protein n=1 Tax=Hondaea fermentalg... [more]
A0A8J2S6B5_9STRA2.340e-3733.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8K1C2H3_PYTOL9.320e-3636.24Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YZW5_9STRA5.180e-3332.93Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig132contigH-canaliculatus_F_contig132:28605..32170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score441.8
Seed ortholog evalue2.8e-121
Seed eggNOG ortholog2880.D7G2J3
EggNOG OGs2DCZ5@1,2SCZN@2759
Ec32 ortholog descriptionEF-hand domain protein
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-12_001730.1
Exons4
Model size984
Cds size984
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig132.2629.1prot_H-canaliculatus_F_contig132.2629.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig132 28605..32170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929058.1264653-CDS-H-canaliculatus_F_contig132:28604..287311622929058.1264653-CDS-H-canaliculatus_F_contig132:28604..28731Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 28605..28731 +
1696845663.464268-CDS-H-canaliculatus_F_contig132:28604..287311696845663.464268-CDS-H-canaliculatus_F_contig132:28604..28731Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 28605..28731 +
1622929058.1381955-CDS-H-canaliculatus_F_contig132:30126..304461622929058.1381955-CDS-H-canaliculatus_F_contig132:30126..30446Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 30127..30446 +
1696845663.4779065-CDS-H-canaliculatus_F_contig132:30126..304461696845663.4779065-CDS-H-canaliculatus_F_contig132:30126..30446Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 30127..30446 +
1622929058.1530244-CDS-H-canaliculatus_F_contig132:30714..309931622929058.1530244-CDS-H-canaliculatus_F_contig132:30714..30993Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 30715..30993 +
1696845663.4869916-CDS-H-canaliculatus_F_contig132:30714..309931696845663.4869916-CDS-H-canaliculatus_F_contig132:30714..30993Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 30715..30993 +
1622929058.172899-CDS-H-canaliculatus_F_contig132:31912..321701622929058.172899-CDS-H-canaliculatus_F_contig132:31912..32170Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 31913..32170 +
1696845663.4968374-CDS-H-canaliculatus_F_contig132:31912..321701696845663.4968374-CDS-H-canaliculatus_F_contig132:31912..32170Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 31913..32170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig132.2629.1

>prot_H-canaliculatus_F_contig132.2629.1 ID=prot_H-canaliculatus_F_contig132.2629.1|Name=mRNA_H-canaliculatus_F_contig132.2629.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=328bp
MKVFALFCKYDTAQRGCLSLANVYKMLGEKKSIFGDSLFELIGIRDFQEL
TFSEWLDAITTFCLFEEEDVLRFCFFILDREKNGYIEKDEMRMLVNMLYN
IDPVKGPTGNTKIAFEKLSVQQDGKIEFWEFELFHKAFPSLFFPAFRLQV
KMMQAVWGESWWGRKKRKLQDDLEERRRHEEEDRLADSNRLEAMRQRRIK
RKMGACKYFCWPCGRAEYDKMFPRANIVVVDPAAEEAERLRKLAEDKARL
QREMEARYLHPETQEYKKFREKLDAKKKKEQSRRDKKPQVDSRRPVKREK
NANDRRLRLENRRIKDGRVPTAGGAFG*
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mRNA from alignment at H-canaliculatus_F_contig132:28605..32170+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig132.2629.1 ID=mRNA_H-canaliculatus_F_contig132.2629.1|Name=mRNA_H-canaliculatus_F_contig132.2629.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3566bp|location=Sequence derived from alignment at H-canaliculatus_F_contig132:28605..32170+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGGTGTTCGCGCTGTTCTGCAAGTACGACACGGCGCAGCGAGGCTG CCTTTCTCTTGCGAACGTATACAAGATGCTTGGCGAAAAGAAGTCCATAT TTGGAGATAGCTTGTTCGAACTCATTGGTGAGCAGCATCTTAAACTTCAA GTTGGAGTATGTATGTTCTACCGTTTAGAAACAAGCCGTAGAGGTATAGT ACTGGACGAGGCTGCCTACAAGTACACAAGTGCAACTTATAGTAAGGGTA GGTCCTAACATTTTTTTTTCGAATGTAAAATCGAAATCAAAACTAGATTT AGATTTCAGATTCTTGGTTGGGTCCAAGCACCGACACATGCAGCAATTGG AATCGAAAATCGAAAGGAGCATCGACCAGCCTATCACATCAATGCCCGCA TTGTGCCCGGTGTGTTTATCTCAAGCGAGAACGGCGGACTCTTCCCGAAT GCCTCGTAGACCCACTGCGGAAACTAAGGAAAGTCTGCACCGCTGTCCCC AGGATAGTCTCTGGCATTGGCATTGCATCTCAGCTCAGCGATAAATAGGC GCCAAACAGCAGATGCTGGGCTCGTGGCCGAGCTCGTGCCCGCTAAAAAA AGGCCCGGAGTTCATGCCCCTACAAAATACCCCGAAACCAGCTGCTGCCG GCAGCAAGACTTTCCTTGCGGATGAGCGTAGCTCCTCCACTTCCGAAGGG ATTCTTACGAAACAAAGTATGAAGAGCTGTTCATGTTAGCTTTGATCACA GCTACTCATGTATACTGCAGCCGTCTATCGGTCACCACGCAGTGAGTTAC GAAGTGCGGACACATCTTCGCGCAGAGAGCCAGCAGGTGACTTCTTGGGG AATGATCTGAGCTACTGCTGTCGCGCTGGACGGCGTAGCCCCTGCCACTG GCGTAGCAGAGGCCCACGGATCCGAGAGGGAACTACTTGTGGTGTCCTTG CGTCTCCCGCAGGCACTACTGCTGCTGTTGCCCCGGGGATCGCTGATCAC AAGCTCTGCCCTATCTGACGCTCCTGCGAGCGTTCGTGGGGAGATGCCCC TCTGTCCCGGTCTAATCGCGCTTTAGATCGCATTTTAGAATCTTTTCGTC TGTTGTTTTGACTCTGCGAATAGGATTAGCTTTCGGAACAATATGGGTGG TTTCGAAAACCCGGCGGCCGCAGCCGTTGACGTGGACCAATCGAAGAGTT CCGAACCCTTTCGATTTCGATTTTAGATGCCGGAAAAAAATGTTAGGACC CATCCTGACCTGCAATAATACAAGAATGTTTTACTACACACTTCACAAGT TGTAGGTAGTACAAATAGGGCAGGCGTAGATACCTTGTAGACGTCGAACT TGATCGATATGTATTCAAAACGAACTACGGTAGAAAGCAACACAGCTATA TGATCCCCTCGCTCGGTGAATCCTTACGCTCGCCAGAGATGTGCGTATGT GTGCTGCACTGACTACAGTAGGAACGCCATGCCCATCTTGTATCTGACGC TCCCGAAAATGTGTTTTGACAGGTATCCGCGATTTCCAGGAGCTGACATT TTCCGAATGGCTGGACGCCATTACAACTTTCTGTCTCTTCGAGGAGGAAG ATGTCCTGCGGTTCTGCTTCTTCATCCTAGACCGAGAAAAGAACGGCTAC ATCGAAAAGGACGAGATGCGAATGCTTGTCAACATGCTATACAACATAGA CCCTGTAAAGGGCCCTACTGGCAATACCAAGATAGCTTTCGAAAAGCTTT CTGTTCAGCAAGATGGGAAGATAGAATTTTGGGAGTTCGAGTTATTTCAC AAGGCGTTTCCTTCCCTCTTCTTCCCGGCCTTCCGGCTGCAGGTGAGAGG ATACCCCCAGTCTGTGCCAGAATATGTGCCGCTAGCATGTGGCGTTCATT CATAAAAGCTGCGTTCGAATTCATCTTCAGCAATCACCCACTGACTCTTT TATTTACCATCGGGTATGGGTTCAGAAGCCAACACAAACATGATTAACCC GACATTTTTTACTGCATGCAGGACGATGGTGTTTTCATCAAAAGTGGATG GGCACTTATTTCCTCTCGCCTCAGATCGAAAGCCTTCCCACTGCGTCACT GCGAACGAAGGTGAAGATGATGCAAGCAGTGTGGGGTGAATCTTGGTGGG GCCGCAAGAAACGAAAGCTCCAAGACGATCTTGAGGAACGGCGTAGGCAC GAGGAGGAAGACCGCTTGGCGGACAGCAATAGGCTGGAGGCTATGCGGCA GCGACGCATCAAGCGCAAAATGGGGGCGTGCAAGTACTTCTGCTGGCCTT GCGGGCGAGCGGAGTACGACAAAATGTTTCCCAGGGCCAACATCGTGGTG GTCGACCCGGCGGCGGAAGAAGCTGAACGATTGCGCAAGGTATGTTCCAT CGATCTCCCGTGTGCGGGCTAGGATGGGTCATCCTACCAGTAAAAAATCC GAGAGAGCATGCCTACCTGACATCTTGAGGATTGAGCTGTAGGATCGTGA CGTACATTGGCTACATCTGCGACGTTCGGTGGATTTCAAGACTTGTCCGA GAAAACGTGTTTATCAGCAATCACCCGCCATCTTTGTGCAATTGATGCTG GCAGTGGTTTGCGCAAGTTCCGAATATGTTTCTCCTTCGCTGCTTCCTTT GTTCTGTGCTTGCTTTCAGAGGTGAACCGCGTGCGCCACGTTCCTGGAAG ACTTTTTAGGCTCGTTTCGGGTTTCCCTCATCACTTTCGGTGTTTGTTCT TGGCTTCGTGAAAAAGAGATAAGTTGCGATGATGAGTGGTGGATACGAAT TCGGGTTTTGCCACCAGACTCACATGTTCTATCGTTGACAGTAAGTGTGT AAGGAGGGAATCATTTTAAACACACATTAAGATGTTGACTTCATGAAGGT AACCTCCACACATTTGTGTGTGCGAAGGGCGAAGCCAGACGCGGTCTCTA CCCGGATAGTTAGCGAAGGCGAAACTACTTCCTTATTTCATTTGTATTGC TGTTGACGAACACGCTTGATGGTCTCGGCTTTCTGACGTGTAACAAGAAC GCACCCGTAAGGGTGACAGACTATGGGGTGCTGCGTATACTTGAGAAACT CAGACAGACGTCGGTACGAACTCAGGCGTCGATGCGCATGAACTACGTGA CTAGGAACGTTTCTCGTGGGAACGAGGGAGCTCGCGAAAGTGAGATACGC GAACCTTGAGGTACTCGAGCAGGAGACAAATGAAACGGAGAAAATAGTTT TGGCACCGCTTGCCTCCTGATAACTATTTTTGCTGATGCATCTCACTCCC TCCTGCAGCTAGCGGAAGACAAAGCAAGATTACAGCGCGAGATGGAGGCG CGATATCTGCACCCAGAAACCCAAGAATACAAGAAGTTTCGGGAAAAGCT TGACGCCAAGAAAAAAAAGGAGCAGAGCCGGCGGGACAAGAAGCCGCAGG TTGACAGCCGCCGGCCAGTGAAGCGAGAAAAAAACGCGAACGACCGTAGG TTACGACTGGAGAATCGCAGAATCAAGGACGGGAGAGTGCCCACTGCTGG TGGAGCTTTCGGATAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig132:28605..32170+

>mRNA_H-canaliculatus_F_contig132.2629.1 ID=mRNA_H-canaliculatus_F_contig132.2629.1|Name=mRNA_H-canaliculatus_F_contig132.2629.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1968bp|location=Sequence derived from alignment at H-canaliculatus_F_contig132:28605..32170+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGGTGTTCGCGCTGTTCTGCAAGTACGACACGGCGCAGCGAGGCTG
CCTTTCTCTTGCGAACGTATACAAGATGCTTGGCGAAAAGAAGTCCATAT
TTGGAGATAGCTTGTTCGAACTCATTGATGAAGGTGTTCGCGCTGTTCTG
CAAGTACGACACGGCGCAGCGAGGCTGCCTTTCTCTTGCGAACGTATACA
AGATGCTTGGCGAAAAGAAGTCCATATTTGGAGATAGCTTGTTCGAACTC
ATTGGTATCCGCGATTTCCAGGAGCTGACATTTTCCGAATGGCTGGACGC
CATTACAACTTTCTGTCTCTTCGAGGAGGAAGATGTCCTGCGGTTCTGCT
TCTTCATCCTAGACCGAGAAAAGAACGGCTACATCGAAAAGGACGAGATG
CGAATGCTTGTCAACATGCTATACAACATAGACCCTGTAAAGGGCCCTAC
TGGCAATACCAAGATAGCTTTCGAAAAGCTTTCTGTTCAGCAAGATGGGA
AGATAGAATTTTGGGAGTTCGAGTTATTTCACAAGGCGTTTCCTTCCCTC
TTCTTCCCGGCCTTCCGGCTGCAGGTATCCGCGATTTCCAGGAGCTGACA
TTTTCCGAATGGCTGGACGCCATTACAACTTTCTGTCTCTTCGAGGAGGA
AGATGTCCTGCGGTTCTGCTTCTTCATCCTAGACCGAGAAAAGAACGGCT
ACATCGAAAAGGACGAGATGCGAATGCTTGTCAACATGCTATACAACATA
GACCCTGTAAAGGGCCCTACTGGCAATACCAAGATAGCTTTCGAAAAGCT
TTCTGTTCAGCAAGATGGGAAGATAGAATTTTGGGAGTTCGAGTTATTTC
ACAAGGCGTTTCCTTCCCTCTTCTTCCCGGCCTTCCGGCTGCAGGTGAAG
ATGATGCAAGCAGTGTGGGGTGAATCTTGGTGGGGCCGCAAGAAACGAAA
GCTCCAAGACGATCTTGAGGAACGGCGTAGGCACGAGGAGGAAGACCGCT
TGGCGGACAGCAATAGGCTGGAGGCTATGCGGCAGCGACGCATCAAGCGC
AAAATGGGGGCGTGCAAGTACTTCTGCTGGCCTTGCGGGCGAGCGGAGTA
CGACAAAATGTTTCCCAGGGCCAACATCGTGGTGGTCGACCCGGCGGCGG
AAGAAGCTGAACGATTGCGCAAGGTGAAGATGATGCAAGCAGTGTGGGGT
GAATCTTGGTGGGGCCGCAAGAAACGAAAGCTCCAAGACGATCTTGAGGA
ACGGCGTAGGCACGAGGAGGAAGACCGCTTGGCGGACAGCAATAGGCTGG
AGGCTATGCGGCAGCGACGCATCAAGCGCAAAATGGGGGCGTGCAAGTAC
TTCTGCTGGCCTTGCGGGCGAGCGGAGTACGACAAAATGTTTCCCAGGGC
CAACATCGTGGTGGTCGACCCGGCGGCGGAAGAAGCTGAACGATTGCGCA
AGCTAGCGGAAGACAAAGCAAGATTACAGCGCGAGATGGAGGCGCGATAT
CTGCACCCAGAAACCCAAGAATACAAGAAGTTTCGGGAAAAGCTTGACGC
CAAGAAAAAAAAGGAGCAGAGCCGGCGGGACAAGAAGCCGCAGGTTGACA
GCCGCCGGCCAGTGAAGCGAGAAAAAAACGCGAACGACCGTAGGTTACGA
CTGGAGAATCGCAGAATCAAGGACGGGAGAGTGCCCACTGCTGGTGGAGC
TTTCGGATAACTAGCGGAAGACAAAGCAAGATTACAGCGCGAGATGGAGG
CGCGATATCTGCACCCAGAAACCCAAGAATACAAGAAGTTTCGGGAAAAG
CTTGACGCCAAGAAAAAAAAGGAGCAGAGCCGGCGGGACAAGAAGCCGCA
GGTTGACAGCCGCCGGCCAGTGAAGCGAGAAAAAAACGCGAACGACCGTA
GGTTACGACTGGAGAATCGCAGAATCAAGGACGGGAGAGTGCCCACTGCT
GGTGGAGCTTTCGGATAA
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