mRNA_H-canaliculatus_F_contig132.2627.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig132.2627.1
Unique NamemRNA_H-canaliculatus_F_contig132.2627.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig132.2627.1 vs. uniprot
Match: A0A6H5L7V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V5_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.120e-39
Identity = 74/124 (59.68%), Postives = 92/124 (74.19%), Query Frame = 2 
Query:  818 RRDMSINHGVWVPHLDGYGRRYWANNITGQTSYEMPGGSPHISPLQGPMQPQQYGATPPLLGLTPPFLAQGIAGVSPMPPPLTLGQCYKPATFSGRKWEELYDSRGNKYWVNNITRQSTSIDPY 1189
            RR+MS+N+G   P+ D YG  YW N  TG  SY+M GGSPH+SP+Q PM+ QQ+G +PP LG TPPF AQG+A  +P+ PPL LG  +  A    R+WEELYDSRGNKYWVN +TRQ+T+IDPY
Sbjct:   37 RRNMSLNNGYLGPYYDEYGC-YWVNYATGHRSYQMVGGSPHVSPMQAPMRGQQFGMSPPQLGYTPPFRAQGVAA-TPILPPLALGPSHAEAAVPTRRWEELYDSRGNKYWVNTVTRQATNIDPY 158
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BLAST of mRNA_H-canaliculatus_F_contig132.2627.1 vs. uniprot
Match: D7G2J4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J4_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 8.130e-39
Identity = 75/123 (60.98%), Postives = 91/123 (73.98%), Query Frame = 2 
Query:  821 RDMSINHGVWVPHLDGYGRRYWANNITGQTSYEMPGGSPHISPLQGPMQPQQYGATPPLLGLTPPFLAQGIAGVSPMPPPLTLGQCYKPATFSGRKWEELYDSRGNKYWVNNITRQSTSIDPY 1189
            R+MS+N+G   P+ D  G  YW N  TGQ SY+M GGSPH+SP+Q PM+ QQYG +PP LG TPPF AQG+A  +P+ PPL LG  +  AT   R+ EELYDSRGNKYWVN +TRQST+IDPY
Sbjct:    2 RNMSLNNGFLGPYYDENGC-YWVNYATGQRSYQMVGGSPHVSPMQAPMRAQQYGMSPPQLGYTPPFRAQGVAA-TPILPPLALGPSHAEATVPTRRREELYDSRGNKYWVNTVTRQSTNIDPY 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig132.2627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7V5_9PHAE1.120e-3959.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2J4_ECTSI8.130e-3960.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig132contigH-canaliculatus_F_contig132:20965..25849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001740.1
Exons3
Model size2890
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig132.2627.1prot_H-canaliculatus_F_contig132.2627.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig132 21791..24016 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.8884215-UTR-H-canaliculatus_F_contig132:20964..217901622929057.8884215-UTR-H-canaliculatus_F_contig132:20964..21790Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig132 20965..21790 +
1696845663.4032304-UTR-H-canaliculatus_F_contig132:20964..217901696845663.4032304-UTR-H-canaliculatus_F_contig132:20964..21790Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig132 20965..21790 +
1622929058.0321612-UTR-H-canaliculatus_F_contig132:24016..253591622929058.0321612-UTR-H-canaliculatus_F_contig132:24016..25359Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig132 24017..25359 +
1696845663.4336212-UTR-H-canaliculatus_F_contig132:24016..253591696845663.4336212-UTR-H-canaliculatus_F_contig132:24016..25359Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig132 24017..25359 +
1622929058.0480018-UTR-H-canaliculatus_F_contig132:25497..258491622929058.0480018-UTR-H-canaliculatus_F_contig132:25497..25849Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig132 25498..25849 +
1696845663.4448936-UTR-H-canaliculatus_F_contig132:25497..258491696845663.4448936-UTR-H-canaliculatus_F_contig132:25497..25849Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig132 25498..25849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.9788017-CDS-H-canaliculatus_F_contig132:21790..218491622929057.9788017-CDS-H-canaliculatus_F_contig132:21790..21849Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 21791..21849 +
1696845663.4130964-CDS-H-canaliculatus_F_contig132:21790..218491696845663.4130964-CDS-H-canaliculatus_F_contig132:21790..21849Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 21791..21849 +
1622929057.9910305-CDS-H-canaliculatus_F_contig132:23706..240161622929057.9910305-CDS-H-canaliculatus_F_contig132:23706..24016Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 23707..24016 +
1696845663.4221706-CDS-H-canaliculatus_F_contig132:23706..240161696845663.4221706-CDS-H-canaliculatus_F_contig132:23706..24016Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 23707..24016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig132.2627.1

>prot_H-canaliculatus_F_contig132.2627.1 ID=prot_H-canaliculatus_F_contig132.2627.1|Name=mRNA_H-canaliculatus_F_contig132.2627.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=123bp
MSINHGVWVPHLDGYGRRYWANNITGQTSYEMPGGSPHISPLQGPMQPQQ
YGATPPLLGLTPPFLAQGIAGVSPMPPPLTLGQCYKPATFSGRKWEELYD
SRGNKYWVNNITRQSTSIDPYF*
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mRNA from alignment at H-canaliculatus_F_contig132:20965..25849+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig132.2627.1 ID=mRNA_H-canaliculatus_F_contig132.2627.1|Name=mRNA_H-canaliculatus_F_contig132.2627.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4885bp|location=Sequence derived from alignment at H-canaliculatus_F_contig132:20965..25849+ (Hapterophycus canaliculatus Oshoro5f female)
GTCATCTTCACGAACCTGTGACGCGAACTCACGGAATCTAAGCCGGAGCA
CAACATCACCAACAAACAAACCAGGTGGAGGGCCGTGCATGTTGGAAATC
GTTTGTTCGCTCTTGCCGACAAAATACTTGTATATCTTTCGAGTAGAAGG
TACTAGGAACGAAGTGCAACAACACTTCAAAACTAGATTCCCGGAGTACA
TGATCAACGAGCTAAGCCGTCAGAAGCAGTGTTGTCGGCATCCTGTCCAG
ATTACGAGTCGTCGATATCACTTTGTACATGTTTTGTGGGGCACTCCTAT
AAATCGCTCAACACACACCCTTGGATGAGCGGCGGGTCATACGTAAATTT
GTACGCAAGTATATCGTGAGTACCAGGTATCTGTTTATCCACAGCGGTTG
TTGGGAAGGAAGGCTCTGCGGGCTCAACCAGTAACGCATTAACCATTCAC
AAAGGGCTAAGAGTACCCCACTAAAAATGATAGCCATCGTGTTCGAACAC
GCCACAAGAAACGAACATCCGTGGACCCATCTGTCACCAGGTGCCGGCGA
CGAGAGGCATTTATTATATTTGTGGACCCATCTGTCACAACGAACGGCGA
TGTTGTACCATCCATAGTCTTCTCTCCTCGTAGTCTCCTGCGCAGGAACG
ATGACCCAATATGTGGTGTATTATTCTGCTGTCTATAGACTATCTCGACA
GAGATTTGAAGATCAGGCGTCGACTTACTCAACAATCGTGATTTGCGCAC
GTCCAATGAGGAAAACCGCCAAAATCCACTCCCCCCGCGCCCCCACCCTC
TCCCAACCGTTTCCATCCGCAGAGACATGTCCATCAACCACGGCGTATGG
GTGCCTCACCTGGATGGATATGGGCGACGCTACTGGTAAGAGAGCTTCGA
TGCGGAGGTCGTTACGAAGGCTGTATGATTTATGCTCCGTCTTCAAGACG
TCCTTGTCCTCCGCCATAGCAAATGGTGATGGTGTGGCAAGTGGCTCTAG
CCCACTCCATGCACTCTTTTCGGCAAACTTTAGTACTTGCCCCCAGGATA
TCTTTTGGCTTACGTGCCTCGCTCCGAAGGTGTTCAGGACGCCACTGCTG
TGTGACATTAATCGTTTCGGGCGACTTTGCCGCGCCATTCACTTTGAAGT
TTGTTTTTTTCAGCGGTCGGCATTGAACACAATTAGAAAGCCTCAGCGCT
GGGTGTGGATTCCAACCGTTCGTTGAGGCGTCCCCTTTCCACCCCGCCTC
TGTTACTATTGTGAACATAATGTTTCGTATCACCGGTTTGGTCGACCTGC
ACCTCGTTGCCAGAAACATATGGTGCCACTGAGTTGCTCACTCAGCTGTA
CGGTGACTAACGTGTGTCTCTGCCACTCTTCGTACTCGCATGAATCCTTT
GATCGGAGCCTGAATGTTTTCTTCGTTGTTAGTGGTAAACTTCAACAAGG
TTGAATCTTGCGGCAATACGGTGCCGTGTCAAGCACGCATGATATGCATG
CATTCCAGCAAAAGTCCCTATTTTATCCTGGGCGTTTCTGTCTATAAATG
AGAGATTCAAATGAGAAGAAAGTCAATTCTCCAGGAAGCCTCTGATTTAA
GCACTTGGATTTCCCAGTCGTTTTTTATGCTTTTAGAGCAAGAGACAAAT
ACACCGAAGGAACACTTTCTGGGTTGCGTTTCAGCAAGCGTTTCAGGAGG
GTCGTGTTGATTGCCACGCAGTTAGGATTCAGTGAGCTGGATGGCATAAA
AACATTGACAGACTCAGAGAGGGCCGGAATATGCAGGGGTTGCGGTGAGA
TCGATACCGTTCAAAGTTAAGTTTCATGCAATGAACAGGAAAGGGGATAC
TCATCCGGGCTTTTAAAGTTTTTGTGATGAATCGCGAGGAGTCCACTGTC
CACGTAATCCATGATCCATGTCTCAAACATATGTCATTAGTGGCGCCGAA
GGAATTAGTAGATGACGGCCATGAAGAGACGGGATCAGTGTGGAGACGGC
TACACGTCCTTATTTGCCTTACAGGTCGCATAATTAAATCCTTATTTGCC
GTAGAGGTCGCATAATTTACGATATTGACTGGAATTTGTACATACGCTGA
GAACACGCACGCAAGCATGGTTCGAAGAGGAGGTCTTGGGACAAGCTCAA
ATGTAGAGAGCGAAATAATGCATACCTATATCAACCATTTCCAAGAAGCC
TCAAATCTCCAGCGGAGATAACTACGAACGGCACTACGGCGGGGGTCCAA
ACGTCGGTTGTTCCGAAAGTGAATGGCGGGGTATGCGGGGAACCAATACG
AAGGGGCAAACTATATTTCTCGCTGCTGGCATCATAAGTGTGCACTCGAA
ATAATGGAGGCCACGATGATGTGTATTGGAAACCCTTGGCACGGGAGATT
CATTTTTGGTCGTCACCGGTTGGAGGACGGGTAGGGAAAAGCGTGAAACA
CGAGATACTTGGTCTCTCTTTGACCACAGCTTGCATCGATGGTTGACAGG
TTCGTCAAATTATCTCCCTGAAGAGCAAAGAAGGGGGGTGCTCCCCGCGT
CAAGCGCCTACAAATAAGATGTAAATGCGCGGGGCATGATACACGTGCCG
TCAACCCCCCTTCTTCGTTTACCCGGGACGGAGCCGGGCAAAACAAAGCA
AATATAAAAACGTAGACCAGTCCAGCTCAACCTGTTTGCCCTCACGCAAA
CATCGCACGCCCTGCCTCTTACTTCGGCGTTTGTCAATCCAGGGCAAATA
ACATCACCGGACAGACTTCCTACGAGATGCCAGGCGGGAGTCCTCATATC
AGCCCCCTTCAAGGTCCGATGCAACCCCAGCAGTACGGCGCGACTCCTCC
GCTGCTCGGCTTGACCCCGCCATTTCTTGCTCAAGGCATCGCTGGCGTGT
CACCCATGCCTCCTCCCCTGACGCTTGGCCAGTGCTACAAACCCGCGACT
TTTTCTGGTCGCAAGTGGGAGGAACTCTACGATTCGCGGGGCAATAAATA
CTGGGTGAACAATATTACTCGCCAGTCGACAAGCATCGACCCTTACTTCT
GAAGCTTAATACGCTCGAGCGTCCACAGCTCGCGCCGAGGAAGCATAAGT
GCGACGATGTTCGACTGTTTTTATTTCTTTTACGCTGCTTTACGATCGCG
GTGTGGAGGGAGGTAAGTCGAGGCGCGTCACAAACTGCCTGCCGGGGGCG
AAAAAAACACAAAAGCACACAGGCGGGCTAGAACCACTCTTTATTGTCCA
GTTAGCGATTCTTGAAAATAAGCCGCCGCTTCTTGGAGCCTCGATGCGCG
AGGATGTCGTTTTAAAGTCACTCGCTCTTGTCTGTACCGCAGCGCTACGC
GCCAAATTTTGCTGCAATGCATGGTTTGTGTTTCGCTGGTGTTGCGGTGG
TGGAATAAGTCGTGTTGTCGTCTTCGACCATGATGCGTATTGAGTGTTGA
TGGAACTCCAAACGGATTTTGTTGTAAATAATGGTAGATTTTGCCTGCGC
TATGATTTGTGTTTCGACATACTGAGTATTTGGTTTGGCACATTGAGTTT
TACAGCGAAAGGCGCAAAAGTAGCCCAGGGTGGTGGAGGGATCCATGTAT
TATCTGTGTGATGAAAGCAAGAGCTGACAACTGTCATCAAATGTTGAGGA
AGCAGTGCCCAAGGCAGTATCAAGCACAGTTGCAGCTTCAGTTTGTCGGA
AAGAGGCCGAGTGAAAATGAGACGTGCATGTGCTCTTCCTTCTCTTCGCG
CTCTCGAACCTTTTGTGAACACCAACGACGTGGAAGGTGACAGAATGCTT
TGCAAGAATTTTGAAGGTATTTGTCAGGGTAGCGAAGAGAATGCGAAATG
GTGGAGATGGAGGTTTGGAAGTCATATTGTAGCATCAAGCTGACGGAGCT
GTCTTCGCCGAACGGGTAGCTATGGCGTGGAAGGCGCTTGCTCTAAAAAA
CAACCGTGCGAGGTGATGTAGGTCGGAGTGTATGATCTCGGCCACTGCCC
TGGCAAAACATAATGTAAGAAGCTTAACAGCACCCGTATTTGCGTTGTGT
GCCTGGATTGTCAGGTCGTGTTGTTTGTTTTGATAACCTGATGTATGTGT
GTTGTTGTGGTGCATGATGGAAGGGCGTTCGGGCGAGCGTTGATTTGAGC
GTACATTGCGTAAAAAATGAATGTAATATATCCTACCCAGCACCCCTACC
CAGCACCTAAGAAGAAGCTTACCCCATGGCGGTGTGGGTGAATCAAAATC
TAAGGGAGTACCTCGAATATGTGCACTGGTGCAAAACTCCTGTACTGTCA
AGGCTCCTAGTCTCGGTCCGATACAGCTTTGTACATCGAGCAGTCGCCAT
CCAAGCAGCTCGGAGAACCAACTACGCCCAAAAGCTTCCTCATGATAGAT
ATCTAGAAACATCTGGACTTAAAAACAAGGTTTTTGGTGCTTCGCTCCAT
CGAGCGATTCCGCCGTGAAGGGCAGTTTGAAGTTTTTGAAGGTGCTCCTT
GTATTTCTATACGTAAATCGCATAACACACATTGTTGAATATACTGGTAG
AAAACTCACAATTCGGACAGATCTTCGTTGAGTATTTCGGACGGAGATTG
GCGAAGACATTTCTACAGGCTGGCTAAGCATCACAGGTTAAAGCTGAGAG
TAGAATGTCCAACAACAGGGGGGGCAGAGCAGTGACAGATGATCGAAAAT
CATTCACGAACACAACCTAGCGCAAGCCAGAGAGCCATCTACGAGGTGGC
GGCAAGAGATATCAGCTCTTGCCACGAGGAGGAGGCTACAAAACGAGTCC
AAAAGGCGATCAAGGGTGTAAACTGAAAGGGTCACTCCTAACGGCAGCAA
TGTGTGTGTGTGCGCGCGCGTGTGTGTGAGAGAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig132:20965..25849+

>mRNA_H-canaliculatus_F_contig132.2627.1 ID=mRNA_H-canaliculatus_F_contig132.2627.1|Name=mRNA_H-canaliculatus_F_contig132.2627.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=738bp|location=Sequence derived from alignment at H-canaliculatus_F_contig132:20965..25849+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCATCAACCACGGCGTATGGGTGCCTCACCTGGATGGATATGGGCG
ACGCTACTGATGTCCATCAACCACGGCGTATGGGTGCCTCACCTGGATGG
ATATGGGCGACGCTACTGGGCAAATAACATCACCGGACAGACTTCCTACG
AGATGCCAGGCGGGAGTCCTCATATCAGCCCCCTTCAAGGTCCGATGCAA
CCCCAGCAGTACGGCGCGACTCCTCCGCTGCTCGGCTTGACCCCGCCATT
TCTTGCTCAAGGCATCGCTGGCGTGTCACCCATGCCTCCTCCCCTGACGC
TTGGCCAGTGCTACAAACCCGCGACTTTTTCTGGTCGCAAGTGGGAGGAA
CTCTACGATTCGCGGGGCAATAAATACTGGGTGAACAATATTACTCGCCA
GTCGACAAGCATCGACCCTTACTTCTGAGGCAAATAACATCACCGGACAG
ACTTCCTACGAGATGCCAGGCGGGAGTCCTCATATCAGCCCCCTTCAAGG
TCCGATGCAACCCCAGCAGTACGGCGCGACTCCTCCGCTGCTCGGCTTGA
CCCCGCCATTTCTTGCTCAAGGCATCGCTGGCGTGTCACCCATGCCTCCT
CCCCTGACGCTTGGCCAGTGCTACAAACCCGCGACTTTTTCTGGTCGCAA
GTGGGAGGAACTCTACGATTCGCGGGGCAATAAATACTGGGTGAACAATA
TTACTCGCCAGTCGACAAGCATCGACCCTTACTTCTGA
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