mRNA_H-canaliculatus_F_contig132.2626.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig132.2626.1
Unique NamemRNA_H-canaliculatus_F_contig132.2626.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig132.2626.1 vs. uniprot
Match: A0A6H5L0A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A0_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.630e-24
Identity = 94/262 (35.88%), Postives = 110/262 (41.98%), Query Frame = 1 
Query:  649 MGNGSSRSSAMAYKDGSMWVSSFDDAGNRCWKNSQTGEMTYNLDGGQVSRRPSNTSTTSPYPIRSPAH---------------GHGHATPWATGPAAMHSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFVAAHMHSPVP---------HP-PGYAA-NMVPY---YQPGQ----AAGPPDANLAPTAAGQAVGYRSNKHYVMPRSKKPWMWTQ 1335
            MGN SSRS AM YKDG++W S+FD+AGN CW NS TGE  Y+  GG+  R PS ++ +SP+ ++SP                   GHA PW  G  AMHSP                                                                           GF A  MHS  P         HP PG AA  MVPY   +QPG     AAG P     PTAAG+A+GY S+KHYV PRSK  WMWTQ
Sbjct:    1 MGNVSSRSPAMVYKDGNIWNSTFDEAGNSCWVNSATGERAYHFIGGKAVRGPS-SAASSPHTMQSPGRVSRRPSDTTXXXXXXXXGHAAPWTAGVPAMHSPGGYVAPPMHHSPSPA------------------------------------------------------------GFAAHAMHSSAPADLACPTTNHPVPGQAAATMVPYSYYHQPGYGGVVAAGDP----TPTAAGEAIGYPSSKHYVRPRSKASWMWTQ 197
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BLAST of mRNA_H-canaliculatus_F_contig132.2626.1 vs. uniprot
Match: D7G838_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G838_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.170e-5
Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:  661 SSRSSAMAYKDGSMWVSSFDDAGNRCWKNSQTGEMTYNLDGGQVSRRPSNTSTTSPYPIRSPAHGHGHATPW 876
            SSRS AMAY +G +W S+FD+ G RCW N+ TG+ TY    G+    P+  +  SPY ++       H  PW
Sbjct:    6 SSRSPAMAYSEGGIWCSTFDEMGRRCWVNNVTGQRTYQFIRGRPVT-PTQPAVASPYVVQQSPMPGPHTAPW 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig132.2626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0A0_9PHAE2.630e-2435.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G838_ECTSI1.170e-541.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig132contigH-canaliculatus_F_contig132:15699..20505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_001620.1
Exons3
Model size3499
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig132.2626.1prot_H-canaliculatus_F_contig132.2626.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig132 17857..19857 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.771691-UTR-H-canaliculatus_F_contig132:15698..178561622929057.771691-UTR-H-canaliculatus_F_contig132:15698..17856Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig132 15699..17856 -
1696845663.353333-UTR-H-canaliculatus_F_contig132:15698..178561696845663.353333-UTR-H-canaliculatus_F_contig132:15698..17856Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig132 15699..17856 -
1622929057.8396645-UTR-H-canaliculatus_F_contig132:19857..205051622929057.8396645-UTR-H-canaliculatus_F_contig132:19857..20505Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig132 19858..20505 -
1696845663.393592-UTR-H-canaliculatus_F_contig132:19857..205051696845663.393592-UTR-H-canaliculatus_F_contig132:19857..20505Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig132 19858..20505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.782661-CDS-H-canaliculatus_F_contig132:17856..184571622929057.782661-CDS-H-canaliculatus_F_contig132:17856..18457Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 17857..18457 -
1696845663.3625026-CDS-H-canaliculatus_F_contig132:17856..184571696845663.3625026-CDS-H-canaliculatus_F_contig132:17856..18457Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 17857..18457 -
1622929057.7932837-CDS-H-canaliculatus_F_contig132:18777..188491622929057.7932837-CDS-H-canaliculatus_F_contig132:18777..18849Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 18778..18849 -
1696845663.371213-CDS-H-canaliculatus_F_contig132:18777..188491696845663.371213-CDS-H-canaliculatus_F_contig132:18777..18849Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 18778..18849 -
1622929057.818197-CDS-H-canaliculatus_F_contig132:19837..198571622929057.818197-CDS-H-canaliculatus_F_contig132:19837..19857Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 19838..19857 -
1696845663.3847713-CDS-H-canaliculatus_F_contig132:19837..198571696845663.3847713-CDS-H-canaliculatus_F_contig132:19837..19857Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 19838..19857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig132.2626.1

>prot_H-canaliculatus_F_contig132.2626.1 ID=prot_H-canaliculatus_F_contig132.2626.1|Name=mRNA_H-canaliculatus_F_contig132.2626.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=231bp
MGNGSSRSSAMAYKDGSMWVSSFDDAGNRCWKNSQTGEMTYNLDGGQVSR
RPSNTSTTSPYPIRSPAHGHGHATPWATGPAAMHSPGPAAMHSPGSAVMH
RPGPAVMHSPGPAPMHSRGPAPMHSPGPASMHSPGPAVLRSPGPAAMHSP
GPAAMHSPGPAGFVAAHMHSPVPHPPGYAANMVPYYQPGQAAGPPDANLA
PTAAGQAVGYRSNKHYVMPRSKKPWMWTQG*
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mRNA from alignment at H-canaliculatus_F_contig132:15699..20505-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig132.2626.1 ID=mRNA_H-canaliculatus_F_contig132.2626.1|Name=mRNA_H-canaliculatus_F_contig132.2626.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4807bp|location=Sequence derived from alignment at H-canaliculatus_F_contig132:15699..20505- (Hapterophycus canaliculatus Oshoro5f female)
TCTCGTCTTGCGTTCCACTACTTGCCACGCGACAACTCGTACAACCAACT
CTTTCGATAGGAAGCCGATTTTCGTTTGTTGGGAGGAGCGTGGAGGGGGG
AGGGTATTGTTTCACTTGGCAACTCACCAACCGCCGCAATGTTCCGCCGG
ATCCGGCATCCCCTTTGAAGAGATGAGAGGCATTCTAAATTTCTAAAATG
TACCAATCGTACCGTTTTTAGGATCCCACGGACGGTGACGTTCTATATCG
TACTTGTATTGTTTTGAAGTCCGCAGCATGACGAAACCCTCAACGGCGAG
CGAAAGTTCTCCGGCAATCTGCCTCTTCCAGATGCCCCCCTCCTTCTGTG
TCCCTCTCCCCTGGGAAAATACTGCGATTCAACTTGAAACTTGACAAGTA
ATTCGAAGTATCAAACAAGGCGGATCGGTTCGCGTGTTCCCTCCGTGCAC
CTTGTCCATCCTCACCCTTCTGCAGCCCCATTCTTCGCTCTCCTCACGTA
CTCCGGACACTCTCTCTTGGCGTCGATATCGTCTTCACTTTGCACCTCCT
ATCAAGATCTTCACTTGGATCTCTCTGACCACCCGAGGCTTCTACGACTC
CCACCCTACACAAGCAGAACAGCACACGTCCTTGTGACAGTAGAAAAAAT
GGGTAACGGCTCTTCTAGGTGAGTTGTTTCTAACCAACCTGCCTCGCTAG
GGAATTGTGCCTCGGTGTTCGAGAAAATGGAGTATGTTGCAAAGGGGTTG
GACAAGCACACCTTCCTTGACGTAGCTCTAGACCAATGCTGGTAGAATAT
GTTACGAACTCTACGGACTCTTGGGTGGACGCAGTTGAAATCGACGGCAA
GCACTCACGGTGACCAACTGTCAAAGCCCGGGTAAGCAACAACAGCTACT
CCGCCTATTTGTATCTTATTTCTGTGGGCACGAGGGGAAACATTCGGTGA
GGCTGTCGTTCAGTAACATCAGACATATATCTGGTTCCCTGGTAGTGTCT
GCACGATTAGACCCGAGACAGTGTGTAGTCGAAAGAAGGTCAGCTATGCC
CCGGTACAACTACCACGGTAGTTCAAGCGAGCGGTTGCGGTTGCTGGCCG
CTGCGCCGCTGTGTCGCTGTGTCGTGCTACAACATTCCAGCTCATCCAGG
AATGTGGGTACGCGCGCTGTTGTTGTGGGAGCGTTTCGCAGAAATCCAGG
CCGAGGGGTCGCTTCGCCTTGTTGGGGCTCTTCTTCGTCGTAGATTGCCA
GTAGAGTGCTGCGCCAGATCGCAACGGATCACTCGGACGCCAAACTACAG
TATGCCCTTTCTTGTGCTTTGGCATCTGACGCAGAAGCAAGTCTCTTCCC
GACTCATTGAACAAGACGTTTCCAGCTTCAACTTGCAGCTACGCAGGGCT
TCATTCGCTTCCACTCGAGATGCAATGTCCCCGGTTCATCGGGGATGTTG
GGATGTGGGACGCTCCTAAAGAGAGTCCGAAACCTCTTCTTGTTGGACTT
CGCCACCATCTAACTCGAACAGGGAATCGAGAACTCCATTCATGTGGGGG
AACGCCTTCTACCCTACTCCACCTTGCCCACTCCAACTCTCTCGAGCAGA
AGCCCTCACCTTTTGCTCCTTACCACCCCGCAACCCTCCCACAACTCGTT
CTTCAGATCTTCGGCAATGGCGTACAAGGACGGGAGTATGTGGGTGAGCA
GTTTCGACGATGCGGGTAACCGCTGCTGGTGAGTTACGCTCTCTGGTGTA
CCTGGTTTCCTGTGAGACATTGAATGGGGTTTCAGCTCCCTTTTTCGGAG
ATTGACCCAACCTCAGATAGTTCCTTTGCACGCTATGCAACTTCCGCTGT
AGTCTCGAGTGGGAGACAGATGTTGAGCTGTCTCTGGTCGTAGTCTTAAC
CGGAATGCAAAACCCTTCGTGTTATCAACTCGCCGGCGTTGCTACTCCGT
TGTGTAGAGCGGCTTACACCAATCGCCTAACCGTATTCTAGGGGCCGAGC
AGTCATTTCAGCCCAAGCCCAAATTCTTGTTTTATTCAATCGACACAGGA
AAAACAGTCAAACGGGCGAGATGACCTACAACCTGGACGGCGGCCAAGTC
TCAAGGCGCCCCTCAAACACCTCCACCACGTCGCCCTACCCCATTCGAAG
CCCGGCCCACGGACACGGACACGCCACACCCTGGGCTACCGGACCGGCGG
CTATGCACAGCCCAGGACCGGCGGCTATGCACAGCCCAGGGTCGGCGGTG
ATGCACCGCCCCGGACCGGCGGTGATGCACAGCCCAGGACCGGCACCTAT
GCACAGCCGAGGACCGGCTCCTATGCACAGCCCAGGACCCGCATCGATGC
ATAGCCCAGGGCCAGCCGTTTTGCGCAGTCCTGGACCTGCGGCTATGCAT
AGTCCGGGACCAGCGGCAATGCACAGTCCCGGGCCGGCGGGCTTCGTTGC
GGCTCACATGCATAGCCCCGTACCGCACCCTCCTGGCTACGCTGCAAACA
TGGTGCCCTACTACCAGCCAGGCCAGGCGGCGGGTCCTCCAGACGCCAAC
CTTGCCCCTACTGCCGCCGGCCAAGCAGTTGGCTACCGCTCTAATAAGCA
CTACGTGATGCCCCGTTCCAAAAAGCCATGGATGTGGACCCAGGGTTGAC
GTATATTTCTCGTTCCGTCGATTCTCCGCGCCTTACACGAAATAGAAGGT
GACTGTTGAAAGTAGCACCATATAGATAAGGCGTTGTGTGTGTCGAGGCG
CTGATCTGCTTGTTTACGTTGTTGGGCACTGGCTACCACCAATGGGAAGT
AGGACCAATGGGATGTATGGCATTTGAGAAAGTTTGAAAGGTCCGATTTC
TTTAAGGGTGGGTCGGACTCTCTGCCGTTGCACGGCGACGGCTCTGGTTC
CACGACGGCTTTGTATCGTACGAAGGATGGGTTGTCTCAGAAGCACTTTG
TATGCAAGCAATTTCTGTAAATAACGTGTTCACACACAAGTGCGGCGGAT
CGGGCGCAAGGCCGTTGCAGAGTCAAAATAGACACGAACTCGGGTAAATC
GAGAGAGCGGTTTGCATTTAATATTGTCCATGTGAAAGTTGGGGGTGCAG
ATAACACCAATGAAAACCGCGTGATTACAGCTGTTTTACATTCTTACGTA
CCAAGCTAGGCTATCTGTCGCGGGTGTCTCAACCGACTGATACAGCACGA
AAGGTGCCCGAACCTGTGAGTATTGGTGTGCGCAGGTTTTGGGCTATGAT
AAGCTTCACCGCATCGAGACAAAGTCCTCCTTTCTTTGCGTATTTTGACC
GTTTTGGTGGCTGTTTGAGAAACTGCCAGTGGTCAGGTGTTGATTTATTT
TTAAGTACTGTTTCGTTGGGTGGCACTAGTTTCCATTTTTCAATCGAGCG
AGTAAGGATGGACGTATGAAGAGAGCAGCAGCTTTTTCTGAGCCTCCAGC
GAAACGACATATTTTTACGGTGGTTTGTCAACCGGAATGCAGAGTGTTTT
GTTTGAGCTTGGTTATAGCCTTCTCGGATAAGGCACACGCCCGCACTGAC
TACGACGTATGTGCCAGAGCTTTGTCGTCGTTAACCCACATGGCACCACC
TACTACTTTATAAACGCCAAGCGTCCGCTGTACTCGTAATTTATTTGGTG
AGCGAGCTTCGAAAATAGGAAAGGGCATACATACGAGTCAGCATCACGAG
TGTGGACGATGTTCACTGTTACTGGTGTTGTTGCACCGTCTCGTCCAACT
GTTGGACTTTCGCGCCATGTTTACGGGGGGGGAAACGTGGTGGTGAGTAA
GGGTTTTCATTGTGAAAGAAGTTTGATTGCTCAGACGTGCGCTCGTCGGC
TTCTTGGCAACATATGTAAGCCGCCAAACTGTGGAAGCAACACTTTCCTC
GGAGTGCACGTAGTGCGTGTTGTGTGCGTATAGAAGATGGCCGGTTGCAT
TATGAAGGAAGGGGGGTGTACGTTCTTGGTTGCTGGCGGGATAATCACGC
AAATATATCGCGACATGATATATTATACGGAGTAGATATGGTAAGCTGGT
GGCGTGGCTCAGTGCCTTCGTTCGCCGTTGATGAAGGAGATACAGTATTC
TTGGACAATATTGTGACGTTTCTTATACTACAATAAGGCTGCAAGTTAAT
TTCCCCTCGCTCCCCCTGCGACCGATGCTTGGCGTCGCCTCCATTTTCGC
CCGGTGTTTCCTCGAGAAAATGGTAGTTGGTGGGTAGTAGGTGCTTGATC
GACTGGATGCTTGCATTTATTTCTGTAGCAACGGAAAGACGTCCAAACGA
GCAACCCTCGATGTGGGTAAGGCTTGGCATAGCTTAGCTGCTGGAAATTT
TGCCAACGGCGCAGGAAACGCCCGTGGTCTGTGTACCGCGTGATACTGGC
GAAAACTTGCTGCGCCTCTTCTTGATTTTAAGACAGTCACAGTCGTGGCA
ATGAACGGCGGGTGTGAGGAATCATGACAGAAAAGAGGATCTAAAACACG
TAATCGAGCGCCTGTGATGAGGGGGAATCTGTCTTGTGGCTCGCGGTTTG
CCATACAACCTGGAATAAGATTGATTGTTGTGGAGCGATCTCGCAAGATA
TTCAAATATACGGAGTATATGATTAGTGGACGTTGATGGGCGCTGGGGAT
GATTCTTCGGACTTTTCCTCTCCATTTTCGGCCCCGCTCATGGAGCTACG
TAAAGAAAAATAAAACCGTGTGAGCTTCCCCCACCCTCCCTTTTCACTTT
CGGAGCAGCCGGCTTTTGGATCCCGCCGTTGTGCTGTACGTAGCCCTCTC
CGCTAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig132:15699..20505-

>mRNA_H-canaliculatus_F_contig132.2626.1 ID=mRNA_H-canaliculatus_F_contig132.2626.1|Name=mRNA_H-canaliculatus_F_contig132.2626.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1386bp|location=Sequence derived from alignment at H-canaliculatus_F_contig132:15699..20505- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTAACGGCTCTTCTAGATGGGTAACGGCTCTTCTAGATCTTCGGCA
ATGGCGTACAAGGACGGGAGTATGTGGGTGAGCAGTTTCGACGATGCGGG
TAACCGCTGCTGATCTTCGGCAATGGCGTACAAGGACGGGAGTATGTGGG
TGAGCAGTTTCGACGATGCGGGTAACCGCTGCTGGAAAAACAGTCAAACG
GGCGAGATGACCTACAACCTGGACGGCGGCCAAGTCTCAAGGCGCCCCTC
AAACACCTCCACCACGTCGCCCTACCCCATTCGAAGCCCGGCCCACGGAC
ACGGACACGCCACACCCTGGGCTACCGGACCGGCGGCTATGCACAGCCCA
GGACCGGCGGCTATGCACAGCCCAGGGTCGGCGGTGATGCACCGCCCCGG
ACCGGCGGTGATGCACAGCCCAGGACCGGCACCTATGCACAGCCGAGGAC
CGGCTCCTATGCACAGCCCAGGACCCGCATCGATGCATAGCCCAGGGCCA
GCCGTTTTGCGCAGTCCTGGACCTGCGGCTATGCATAGTCCGGGACCAGC
GGCAATGCACAGTCCCGGGCCGGCGGGCTTCGTTGCGGCTCACATGCATA
GCCCCGTACCGCACCCTCCTGGCTACGCTGCAAACATGGTGCCCTACTAC
CAGCCAGGCCAGGCGGCGGGTCCTCCAGACGCCAACCTTGCCCCTACTGC
CGCCGGCCAAGCAGTTGGCTACCGCTCTAATAAGCACTACGTGATGCCCC
GTTCCAAAAAGCCATGGATGTGGACCCAGGGTTGAGAAAAACAGTCAAAC
GGGCGAGATGACCTACAACCTGGACGGCGGCCAAGTCTCAAGGCGCCCCT
CAAACACCTCCACCACGTCGCCCTACCCCATTCGAAGCCCGGCCCACGGA
CACGGACACGCCACACCCTGGGCTACCGGACCGGCGGCTATGCACAGCCC
AGGACCGGCGGCTATGCACAGCCCAGGGTCGGCGGTGATGCACCGCCCCG
GACCGGCGGTGATGCACAGCCCAGGACCGGCACCTATGCACAGCCGAGGA
CCGGCTCCTATGCACAGCCCAGGACCCGCATCGATGCATAGCCCAGGGCC
AGCCGTTTTGCGCAGTCCTGGACCTGCGGCTATGCATAGTCCGGGACCAG
CGGCAATGCACAGTCCCGGGCCGGCGGGCTTCGTTGCGGCTCACATGCAT
AGCCCCGTACCGCACCCTCCTGGCTACGCTGCAAACATGGTGCCCTACTA
CCAGCCAGGCCAGGCGGCGGGTCCTCCAGACGCCAACCTTGCCCCTACTG
CCGCCGGCCAAGCAGTTGGCTACCGCTCTAATAAGCACTACGTGATGCCC
CGTTCCAAAAAGCCATGGATGTGGACCCAGGGTTGA
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