mRNA_H-canaliculatus_F_contig13199.2623.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13199.2623.1
Unique NamemRNA_H-canaliculatus_F_contig13199.2623.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13199.2623.1 vs. uniprot
Match: A0A6H5KJZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJZ3_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.840e-6
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 3 
Query:  474 TASQDSSPRMAPSFSVLQHANDSHHPRGLSLPVKIDDPTEKQLPVGNLGGIESSRSSTSSSSSFLGRPSPELTAMYVAQQESFHANIPDDFIDLNSP 764
            TAS      +APSFS+++    S       +    D P  +  P G+ G   ++RS++S     LGR  PE TA YV QQESFHA++PD +IDL SP
Sbjct:  106 TASPPRHALLAPSFSIMEDTKGS-----TDVTPPPDIPPSEGDPRGDGGSPLTARSASS-----LGRLIPERTARYVLQQESFHADVPDGYIDLASP 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13199.2623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJZ3_9PHAE2.840e-641.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13199contigH-canaliculatus_F_contig13199:2381..3144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size764
Cds size753
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.2789648-UTR-H-canaliculatus_F_contig13199:2380..23911622929057.2789648-UTR-H-canaliculatus_F_contig13199:2380..2391Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13199 2381..2391 +
1696845663.1922636-UTR-H-canaliculatus_F_contig13199:2380..23911696845663.1922636-UTR-H-canaliculatus_F_contig13199:2380..2391Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13199 2381..2391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.2941074-CDS-H-canaliculatus_F_contig13199:2391..31441622929057.2941074-CDS-H-canaliculatus_F_contig13199:2391..3144Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13199 2392..3144 +
1696845663.2047439-CDS-H-canaliculatus_F_contig13199:2391..31441696845663.2047439-CDS-H-canaliculatus_F_contig13199:2391..3144Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13199 2392..3144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13199.2623.1prot_H-canaliculatus_F_contig13199.2623.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13199 2392..3144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13199.2623.1

>prot_H-canaliculatus_F_contig13199.2623.1 ID=prot_H-canaliculatus_F_contig13199.2623.1|Name=mRNA_H-canaliculatus_F_contig13199.2623.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=251bp
MKQLVISVDNTTAMEGRPKSSSDRSRPTASSRDGSSKGYRPQDFNSPRQE
QKPLDRRRPFPQEVGEEERRKAFRDSSTTAVLARAEDNTRPTDATLDVKA
DHEIQARRVCQKTPRTARSSPAEGKSEKAQPYHHCDHRDHSPEFSGCAEV
EADCTASQDSSPRMAPSFSVLQHANDSHHPRGLSLPVKIDDPTEKQLPVG
NLGGIESSRSSTSSSSSFLGRPSPELTAMYVAQQESFHANIPDDFIDLNS
P
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mRNA from alignment at H-canaliculatus_F_contig13199:2381..3144+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13199.2623.1 ID=mRNA_H-canaliculatus_F_contig13199.2623.1|Name=mRNA_H-canaliculatus_F_contig13199.2623.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=764bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13199:2381..3144+ (Hapterophycus canaliculatus Oshoro5f female)
ATAGGGGCGCCATGAAGCAACTCGTTATTTCCGTCGATAATACCACTGCC
ATGGAAGGCAGACCAAAAAGTAGTAGCGATCGATCGAGGCCCACCGCTTC
TAGCAGAGATGGCAGCAGCAAGGGTTACCGGCCGCAAGATTTTAATTCGC
CACGTCAGGAACAGAAGCCCCTGGACAGGCGGCGTCCCTTTCCGCAGGAA
GTAGGGGAAGAGGAACGCAGGAAAGCTTTCCGAGATAGTTCCACGACCGC
TGTGCTGGCGAGAGCAGAAGACAACACGCGCCCTACCGATGCTACCCTAG
ACGTGAAAGCAGACCACGAAATACAGGCGCGGCGAGTATGCCAGAAAACG
CCGCGGACTGCACGGTCGTCCCCCGCGGAAGGAAAGTCGGAAAAGGCGCA
ACCCTACCATCACTGCGACCATCGCGACCACTCGCCAGAATTTTCAGGGT
GTGCGGAGGTGGAAGCAGATTGCACCGCCTCGCAGGACAGTAGTCCTCGG
ATGGCACCATCTTTTTCCGTGTTGCAACATGCGAACGATAGCCATCATCC
TCGTGGGCTATCGCTCCCTGTAAAAATTGATGATCCCACGGAAAAACAAC
TTCCGGTGGGAAACTTGGGAGGTATTGAATCATCTCGGTCCTCGACTTCA
AGCTCTTCATCGTTTCTCGGCCGACCCAGCCCCGAGCTTACGGCCATGTA
CGTCGCGCAGCAGGAATCGTTCCACGCCAACATTCCGGACGACTTCATCG
ACCTGAACTCACCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13199:2381..3144+

>mRNA_H-canaliculatus_F_contig13199.2623.1 ID=mRNA_H-canaliculatus_F_contig13199.2623.1|Name=mRNA_H-canaliculatus_F_contig13199.2623.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1506bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13199:2381..3144+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGCAACTCGTTATTTCCGTCGATAATACCACTGCCATGGAAGGCAG
ACCAAAAAGTAGTAGCGATCGATCGAGGCCCACCGCTTCTAGCAGAGATG
GCAGCAGCAAGGGTTACCGGCCGCAAGATTTTAATTCGCCACGTCAGGAA
CAGAAGCCCCTGGACAGGCGGCGTCCCTTTCCGCAGGAAGTAGGGGAAGA
GGAACGCAGGAAAGCTTTCCGAGATAGTTCCACGACCGCTGTGCTGGCGA
GAGCAGAAGACAACACGCGCCCTACCGATGCTACCCTAGACGTGAAAGCA
GACCACGAAATACAGGCGCGGCGAGTATGCCAGAAAACGCCGCGGACTGC
ACGGTCGTCCCCCGCGGAAGGAAAGTCGGAAAAGGCGCAACCCTACCATC
ACTGCGACCATCGCGACCACTCGCCAGAATTTTCAGGGTGTGCGGAGGTG
GAAGCAGATTGCACCGCCTCGCAGGACAGTAGTCCTCGGATGGCACCATC
TTTTTCCGTGTTGCAACATGCGAACGATAGCCATCATCCTCGTGGGCTAT
CGCTCCCTGTAAAAATTGATGATCCCACGGAAAAACAACTTCCGGTGGGA
AACTTGGGAGGTATTGAATCATCTCGGTCCTCGACTTCAAGCTCTTCATC
GTTTCTCGGCCGACCCAGCCCCGAGCTTACGGCCATGTACGTCGCGCAGC
AGGAATCGTTCCACGCCAACATTCCGGACGACTTCATCGACCTGAACTCA
CCAATGAAGCAACTCGTTATTTCCGTCGATAATACCACTGCCATGGAAGG
CAGACCAAAAAGTAGTAGCGATCGATCGAGGCCCACCGCTTCTAGCAGAG
ATGGCAGCAGCAAGGGTTACCGGCCGCAAGATTTTAATTCGCCACGTCAG
GAACAGAAGCCCCTGGACAGGCGGCGTCCCTTTCCGCAGGAAGTAGGGGA
AGAGGAACGCAGGAAAGCTTTCCGAGATAGTTCCACGACCGCTGTGCTGG
CGAGAGCAGAAGACAACACGCGCCCTACCGATGCTACCCTAGACGTGAAA
GCAGACCACGAAATACAGGCGCGGCGAGTATGCCAGAAAACGCCGCGGAC
TGCACGGTCGTCCCCCGCGGAAGGAAAGTCGGAAAAGGCGCAACCCTACC
ATCACTGCGACCATCGCGACCACTCGCCAGAATTTTCAGGGTGTGCGGAG
GTGGAAGCAGATTGCACCGCCTCGCAGGACAGTAGTCCTCGGATGGCACC
ATCTTTTTCCGTGTTGCAACATGCGAACGATAGCCATCATCCTCGTGGGC
TATCGCTCCCTGTAAAAATTGATGATCCCACGGAAAAACAACTTCCGGTG
GGAAACTTGGGAGGTATTGAATCATCTCGGTCCTCGACTTCAAGCTCTTC
ATCGTTTCTCGGCCGACCCAGCCCCGAGCTTACGGCCATGTACGTCGCGC
AGCAGGAATCGTTCCACGCCAACATTCCGGACGACTTCATCGACCTGAAC
TCACCA
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