mRNA_H-canaliculatus_F_contig13189.2619.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13189.2619.1
Unique NamemRNA_H-canaliculatus_F_contig13189.2619.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13189.2619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13189contigH-canaliculatus_F_contig13189:1239..2072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size834
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13189.2619.1prot_H-canaliculatus_F_contig13189.2619.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13189 1306..1722 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929056.197761-UTR-H-canaliculatus_F_contig13189:1238..13051622929056.197761-UTR-H-canaliculatus_F_contig13189:1238..1305Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13189 1239..1305 +
1696845662.8066678-UTR-H-canaliculatus_F_contig13189:1238..13051696845662.8066678-UTR-H-canaliculatus_F_contig13189:1238..1305Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13189 1239..1305 +
1622929056.2327363-UTR-H-canaliculatus_F_contig13189:1722..20721622929056.2327363-UTR-H-canaliculatus_F_contig13189:1722..2072Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13189 1723..2072 +
1696845662.8268802-UTR-H-canaliculatus_F_contig13189:1722..20721696845662.8268802-UTR-H-canaliculatus_F_contig13189:1722..2072Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13189 1723..2072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929056.218033-CDS-H-canaliculatus_F_contig13189:1305..17221622929056.218033-CDS-H-canaliculatus_F_contig13189:1305..1722Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13189 1306..1722 +
1696845662.8183997-CDS-H-canaliculatus_F_contig13189:1305..17221696845662.8183997-CDS-H-canaliculatus_F_contig13189:1305..1722Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13189 1306..1722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13189.2619.1

>prot_H-canaliculatus_F_contig13189.2619.1 ID=prot_H-canaliculatus_F_contig13189.2619.1|Name=mRNA_H-canaliculatus_F_contig13189.2619.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=139bp
MSALEWGAGGSISDAPSIRRLFLFDGKTRELAETWRRPTELTARRSLAVI
PCSLAETTEALLEPENERRWAGNDGLSLMEKWLMSSGSLAAAAAAAAARA
HRAEFSTSNGEIRLSVVGFEGEGAVVLAAAVPAAAGTS*
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mRNA from alignment at H-canaliculatus_F_contig13189:1239..2072+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13189.2619.1 ID=mRNA_H-canaliculatus_F_contig13189.2619.1|Name=mRNA_H-canaliculatus_F_contig13189.2619.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=834bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13189:1239..2072+ (Hapterophycus canaliculatus Oshoro5f female)
TTTCGCCGGCGGGCTCGCCGGCAGCTGGAACTCCGGGTCGCCGTGCTTGG
TCTGCGGCTGGGCGAACATGAGCGCGCTGGAGTGGGGCGCGGGGGGAAGC
ATCAGCGATGCCCCGTCCATCCGCCGGCTGTTCCTGTTCGACGGGAAGAC
CCGGGAGCTCGCTGAGACGTGGAGGAGGCCAACGGAGCTGACCGCGCGAC
GTAGCTTGGCCGTTATCCCCTGTTCGCTCGCTGAGACGACGGAGGCTTTA
CTGGAGCCGGAGAACGAGCGGCGGTGGGCCGGCAACGATGGCTTGTCGCT
GATGGAGAAGTGGCTGATGTCATCGGGATCGTTGGCGGCGGCGGCGGCGG
CGGCCGCTGCCCGCGCCCACAGAGCGGAGTTTTCCACGTCGAACGGAGAG
ATACGGTTGTCCGTGGTGGGGTTTGAGGGGGAAGGGGCGGTAGTGCTGGC
CGCAGCAGTGCCGGCAGCGGCAGGAACATCGTAGGTTGTGCCGGCCGCAA
CCGTCGCCGATGACATCGACGCCGCCGCGCTCGCGGTAAGCGTCTGCTCC
AACCCCGACGACGATTCGTCTTCCTTGAGGTCTGCCTTGTCCCCGCCGGC
ATCATCGTCGCTGGTGCTGCTGGTGCTGCTGCTGCCGGTGATGGTGCTAC
TGCTCCAGCTACCGGCGTCCACCCACGACGACGCTTGCTCTGTGTCGCTG
GTAGACGCGCTGCGGGAAGGAGAACCTGTTCGAAGCGGTGCCGCCTTGGC
AGGCGTTTCCGCACCGCTCACGATCGCGCTGGTGTTGCCGACGTTACCCG
ACTTCTCGCTCTCGTCGGTATCCTCTCCGCTGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13189:1239..2072+

>mRNA_H-canaliculatus_F_contig13189.2619.1 ID=mRNA_H-canaliculatus_F_contig13189.2619.1|Name=mRNA_H-canaliculatus_F_contig13189.2619.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=834bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13189:1239..2072+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCGCGCTGGAGTGGGGCGCGGGGGGAAGCATCAGCGATGCCCCGTC
CATCCGCCGGCTGTTCCTGTTCGACGGGAAGACCCGGGAGCTCGCTGAGA
CGTGGAGGAGGCCAACGGAGCTGACCGCGCGACGTAGCTTGGCCGTTATC
CCCTGTTCGCTCGCTGAGACGACGGAGGCTTTACTGGAGCCGGAGAACGA
GCGGCGGTGGGCCGGCAACGATGGCTTGTCGCTGATGGAGAAGTGGCTGA
TGTCATCGGGATCGTTGGCGGCGGCGGCGGCGGCGGCCGCTGCCCGCGCC
CACAGAGCGGAGTTTTCCACGTCGAACGGAGAGATACGGTTGTCCGTGGT
GGGGTTTGAGGGGGAAGGGGCGGTAGTGCTGGCCGCAGCAGTGCCGGCAG
CGGCAGGAACATCGTAGATGAGCGCGCTGGAGTGGGGCGCGGGGGGAAGC
ATCAGCGATGCCCCGTCCATCCGCCGGCTGTTCCTGTTCGACGGGAAGAC
CCGGGAGCTCGCTGAGACGTGGAGGAGGCCAACGGAGCTGACCGCGCGAC
GTAGCTTGGCCGTTATCCCCTGTTCGCTCGCTGAGACGACGGAGGCTTTA
CTGGAGCCGGAGAACGAGCGGCGGTGGGCCGGCAACGATGGCTTGTCGCT
GATGGAGAAGTGGCTGATGTCATCGGGATCGTTGGCGGCGGCGGCGGCGG
CGGCCGCTGCCCGCGCCCACAGAGCGGAGTTTTCCACGTCGAACGGAGAG
ATACGGTTGTCCGTGGTGGGGTTTGAGGGGGAAGGGGCGGTAGTGCTGGC
CGCAGCAGTGCCGGCAGCGGCAGGAACATCGTAG
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