mRNA_H-canaliculatus_F_contig1318.2613.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1318.2613.1
Unique NamemRNA_H-canaliculatus_F_contig1318.2613.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1318.2613.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.770e-28
Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 2 
Query:  419 MHRSVQTDINDDITITADVTTVYSGS--HVDAVSFITGGNSAACGVNFSIGDEYILSLYPAVGNPFDSTD--VTGLLTVGLCNLARLWSIVPADEKADLAAGC 715
            + +S QTDIN+D+T T  V  VYSG     D +SF+TGGNSA CGV+ +IG+EY+L LYPA  +PFDST     G LTVGLC+LAR+WS VP DEKADL AGC
Sbjct:   58 LSKSAQTDINEDVTFTVQVNAVYSGDVDGQDEISFVTGGNSAICGVDLTIGEEYLLGLYPAGDDPFDSTGGGTAGQLTVGLCDLARVWSDVPDDEKADLEAGC 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1318.2613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCN7_ECTSI1.770e-2861.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1318contigH-canaliculatus_F_contig1318:278..2724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue6e-27
Seed eggNOG ortholog2880.D8LCN7
EggNOG OGs2D2W6@1,2SP8K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1861
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1318.2613.1prot_H-canaliculatus_F_contig1318.2613.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1318 696..995 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.9900632-UTR-H-canaliculatus_F_contig1318:277..6951622929054.9900632-UTR-H-canaliculatus_F_contig1318:277..695Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1318 278..695 +
1696845662.4613485-UTR-H-canaliculatus_F_contig1318:277..6951696845662.4613485-UTR-H-canaliculatus_F_contig1318:277..695Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1318 278..695 +
1622929055.0350354-UTR-H-canaliculatus_F_contig1318:995..10311622929055.0350354-UTR-H-canaliculatus_F_contig1318:995..1031Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1318 996..1031 +
1696845662.4856296-UTR-H-canaliculatus_F_contig1318:995..10311696845662.4856296-UTR-H-canaliculatus_F_contig1318:995..1031Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1318 996..1031 +
1622929055.1803963-UTR-H-canaliculatus_F_contig1318:1617..27241622929055.1803963-UTR-H-canaliculatus_F_contig1318:1617..2724Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1318 1618..2724 +
1696845662.4945533-UTR-H-canaliculatus_F_contig1318:1617..27241696845662.4945533-UTR-H-canaliculatus_F_contig1318:1617..2724Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1318 1618..2724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929055.0098088-CDS-H-canaliculatus_F_contig1318:695..9951622929055.0098088-CDS-H-canaliculatus_F_contig1318:695..995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1318 696..995 +
1696845662.4761622-CDS-H-canaliculatus_F_contig1318:695..9951696845662.4761622-CDS-H-canaliculatus_F_contig1318:695..995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1318 696..995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1318.2613.1

>prot_H-canaliculatus_F_contig1318.2613.1 ID=prot_H-canaliculatus_F_contig1318.2613.1|Name=mRNA_H-canaliculatus_F_contig1318.2613.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=100bp
MHRSVQTDINDDITITADVTTVYSGSHVDAVSFITGGNSAACGVNFSIGD
EYILSLYPAVGNPFDSTDVTGLLTVGLCNLARLWSIVPADEKADLAAGC*
back to top

mRNA from alignment at H-canaliculatus_F_contig1318:278..2724+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1318.2613.1 ID=mRNA_H-canaliculatus_F_contig1318.2613.1|Name=mRNA_H-canaliculatus_F_contig1318.2613.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2447bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1318:278..2724+ (Hapterophycus canaliculatus Oshoro5f female)
ATTCATCCGTTTGCATGTAGATGTATATACCCAGCCAAGAAGCCCAGTAG
CCCAATGGTCTTTACTTTGAGGTTTACGCGCGGGCACGTGCAGTCATAAT
GCCCAGCGCCGAGCGAGCGCGGACATGCAGTGCATGGAGCACGACGCTTC
ACAAGACTTGTCGGCCATCACGCTGTTTGTTCCTCCCTGGGGCGCGCGTA
GTTTTTGCTCCCATTTACCACGTTTCAGTATCGCCGCCTTTGCTTTTTTA
CAGATAAAGACAGTAACTGTATGTCACACATTGACATCTCTTTACGTTTT
TCACTTTGTTCCAGTTGCCCGGGCTGAGTGAACATCACTTCTGGCTGGTT
TCGCTGTGCGCCTCACCTGATACCTGCGTAAGTCTTTGGTGTCGCGGTTC
CCTCCCAACGTTTGAAACATGCACAGGTCTGTCCAGACGGACATCAACGA
CGACATAACCATCACCGCCGACGTCACCACCGTTTATAGCGGAAGTCATG
TCGACGCCGTCAGCTTCATCACCGGAGGCAACAGCGCTGCCTGCGGGGTT
AACTTTTCCATTGGAGATGAGTACATCCTCAGCCTTTATCCGGCCGTCGG
GAACCCCTTCGACTCGACCGACGTGACTGGCCTCCTGACGGTAGGCTTGT
GCAACCTGGCGAGACTCTGGAGTATCGTCCCTGCCGATGAGAAGGCCGAC
CTGGCAGCTGGTTGCTGAGCGAGTGTCTCCAGTCTTCGTTGTGACGACAA
CCAGGTTGGTGTTGGGAAGGGGTGCAAAAAGACCCACATGCTCCAAGTCT
TGTGTGGGGAGGTGTCTCTCTTCCCCGACCTTTATGAAGAAAATTACTCC
CACGTGAAGGCCACAGCACCACCAGACAAACATTCGAGAGAACGCACGTC
AGGGGCACGTCTATACGTATGCCAGTTTCTAGCGACATAGGCCTCCTTCG
ACGGACGGTATTCGATGCCCCCTCTATCACTCTTGATGGGGCAGCACAGC
ATGGTTCCGTCCCGTGTGTGAGTGAAGACCTCCTCTTTGGTCCAGCCTTC
GCTTCCCGCAGCTTCAACCAACCGGTGCAATCGGCATAACTTCAGGCAGC
TGAGTATGACCAAGAACAACAGTCGTCATCTGACAGCGTTGTACCAGGTA
CATACATGCGAGGTGCCCTTTTTGAGAGGTCCCACATGTGCATCGAGAAA
ATTGTTCAGCAGAATGTACGTACGTGTCTTAACGCACACCATCACTCTCG
ACGACTTGCGTAGCTCTCTTTGCTACCACCATCCTCAATGCTCTCTCTAA
CCGCCCCCACACCTTAAATCCGGTGAACGTGTTCATGCAGGAACAAGAAA
GTCTAGTACTTCAACAACGAACGGCAAGCACTGTCAGTGCTCCGACGCTT
GCGACAATCGGGGGGTTTGGTTGCGCAAGTATGGGAACAATGCACCGCTC
GGTATCGGTCGTGCAGGGGCAATAATAGCTTCGATGGCTGCCCGGCCCCT
TAAGCCCAAGTGTCGCTAACTCCATCTGATGCTCTAGTCCTATCCTGAAG
GTACAGATTGGTCTGTAGATGCAGAGCGTGGGTGGTTGGAAAATATTGCT
ATCGATTGCCGTTGCGAGGGATATGCTTTACAGGAGATCGTATATATCTG
CGTTTGTTCCCAAACAGACTAAGGATTATTGACAAGTTCGCTTGTTGCTG
TGTGTTTGATACCCGCGGGTTAGAATCTTGAGAGGAAGCGCTCACGTTTA
AAGCACATACATGTCCATGTTCTTCTGTGTTTGGAACCCGGACATGGGCG
CAACGCCCACCTGTGAGATACAAGACGATCTCGTAGTAAAAAGACCAAAA
CGTACCAGCATTTATATGTGGGCTCAATTGATTGGAGTCTTTTATTTGCC
CGTTTTTCAGTGTTCGGACGAACGGCGCCACACGTTCACTCCAATCGAGT
CGAGGCTCGTGCCTGCCTCTGACTGTTGTGTATCGTATGGAAACAAGGAT
AATGGATGAATGCATCAACCTTCGCAGTGTAAGCAAGAGATTGCGAACCC
TTACGTTACTACAGGAAGTGGACCACCAGTAGACGAGAGAGAGAGCGTGT
GTGTGTGTGTGTGTGAAGCGCTGTTATTTTGGAGAGACGTGAACGGCTCC
AACAAAGTCACATGCCCCGCGACAAGGAGATTTCATTTCGGTGGGAAGGG
AAGTGATGCGATATGGTGGCATCAACAGCAATATACGACTACAAGGCAGT
ATCTCGGGCTTTTTTCGAATATTTTCCCGTCGATGAGGACGACAGCTGGC
TGAAATCGACGACGCACGCACCTGAATTTTGTATGTGGTGTTAGATGTAC
ACTTCACCACTGCTACTAGCTCAGTGATACAGTGTGCATTTAACATGGGC
AACATGTCCCCAGAAGGCTTCTTCTAGTGGACTACTGTATGTAGCTC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1318:278..2724+

>mRNA_H-canaliculatus_F_contig1318.2613.1 ID=mRNA_H-canaliculatus_F_contig1318.2613.1|Name=mRNA_H-canaliculatus_F_contig1318.2613.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=600bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1318:278..2724+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCACAGGTCTGTCCAGACGGACATCAACGACGACATAACCATCACCGC
CGACGTCACCACCGTTTATAGCGGAAGTCATGTCGACGCCGTCAGCTTCA
TCACCGGAGGCAACAGCGCTGCCTGCGGGGTTAACTTTTCCATTGGAGAT
GAGTACATCCTCAGCCTTTATCCGGCCGTCGGGAACCCCTTCGACTCGAC
CGACGTGACTGGCCTCCTGACGGTAGGCTTGTGCAACCTGGCGAGACTCT
GGAGTATCGTCCCTGCCGATGAGAAGGCCGACCTGGCAGCTGGTTGCTGA
ATGCACAGGTCTGTCCAGACGGACATCAACGACGACATAACCATCACCGC
CGACGTCACCACCGTTTATAGCGGAAGTCATGTCGACGCCGTCAGCTTCA
TCACCGGAGGCAACAGCGCTGCCTGCGGGGTTAACTTTTCCATTGGAGAT
GAGTACATCCTCAGCCTTTATCCGGCCGTCGGGAACCCCTTCGACTCGAC
CGACGTGACTGGCCTCCTGACGGTAGGCTTGTGCAACCTGGCGAGACTCT
GGAGTATCGTCCCTGCCGATGAGAAGGCCGACCTGGCAGCTGGTTGCTGA
back to top