mRNA_H-canaliculatus_F_contig13171.2610.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig13171.2610.1 vs. uniprot
Match: D7FZQ1_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ1_ECTSI) HSP 1 Score: 234 bits (598), Expect = 2.330e-72 Identity = 115/126 (91.27%), Postives = 123/126 (97.62%), Query Frame = 1
Query: 1 AEPKTREFKRTLVFCNTVKSCRAADFGLREVDLKALSYHGEVPSDERSANLERFKAGEAKYLVCTDIAARGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQA 378
A+ ++FKRTLVFCNTVKSCRAA+FGLREVD+KALSYHGEVPSDERS+NLERFKAG+AKYLVCTDIA+RGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQA
Sbjct: 272 AQQHLKDFKRTLVFCNTVKSCRAAEFGLREVDVKALSYHGEVPSDERSSNLERFKAGQAKYLVCTDIASRGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQA 397
BLAST of mRNA_H-canaliculatus_F_contig13171.2610.1 vs. uniprot
Match: A0A6H5KY63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY63_9PHAE) HSP 1 Score: 235 bits (600), Expect = 2.580e-71 Identity = 116/126 (92.06%), Postives = 123/126 (97.62%), Query Frame = 1
Query: 1 AEPKTREFKRTLVFCNTVKSCRAADFGLREVDLKALSYHGEVPSDERSANLERFKAGEAKYLVCTDIAARGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQA 378
A+ ++FKRTLVFCNTVKSCRAA+FGLREVDLKALSYHGEVPSDERS+NLERFKAG+AKYLVCTDIA+RGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQA
Sbjct: 389 AQQHYKDFKRTLVFCNTVKSCRAAEFGLREVDLKALSYHGEVPSDERSSNLERFKAGQAKYLVCTDIASRGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQA 514
BLAST of mRNA_H-canaliculatus_F_contig13171.2610.1 vs. uniprot
Match: A0A7S3XYE8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYE8_HETAK) HSP 1 Score: 173 bits (439), Expect = 1.320e-49 Identity = 86/118 (72.88%), Postives = 95/118 (80.51%), Query Frame = 1
Query: 25 KRTLVFCNTVKSCRAADFGLREVDLKALSYHGEVPSDERSANLERFKAGEAKYLVCTDIAARGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQA 378
K T+VFCNTVKS + D L E L+AL YHGEV DER NL RFK GE ++LV TDIAARGLD+PDV+HVVMFDFPLNP+DYLHRSGRTARMGA G VTS+LAKRD VLA AIE A
Sbjct: 186 KTTIVFCNTVKSAQMLDHSLAEAGLRALCYHGEVRGDERRENLARFKRGEVRFLVATDIAARGLDVPDVEHVVMFDFPLNPVDYLHRSGRTARMGASGMVTSVLAKRDRVLAGAIEAA 303
BLAST of mRNA_H-canaliculatus_F_contig13171.2610.1 vs. uniprot
Match: A0A4D9D2M2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2M2_9STRA) HSP 1 Score: 174 bits (440), Expect = 5.240e-48 Identity = 81/118 (68.64%), Postives = 103/118 (87.29%), Query Frame = 1
Query: 25 KRTLVFCNTVKSCRAADFGLREVDLKALSYHGEVPSDERSANLERFKAGEAKYLVCTDIAARGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQA 378
+R ++FCNTV+SCRAA+ LRE+ L + YHG++ S+ER+A L++FK+GE +LVCTDIA+RGLDMP V+HVVMFDFPLNPI+YLHRSGRTARMGAKG+VTSLL KRD VLA+A++ A
Sbjct: 386 ERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALQKFKSGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTA 503
BLAST of mRNA_H-canaliculatus_F_contig13171.2610.1 vs. uniprot
Match: A0A836CEI1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI1_9STRA) HSP 1 Score: 169 bits (429), Expect = 3.700e-47 Identity = 83/117 (70.94%), Postives = 96/117 (82.05%), Query Frame = 1
Query: 28 RTLVFCNTVKSCRAADFGLREVDLKALSYHGEVPSDERSANLERFKAGEAKYLVCTDIAARGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQA 378
RTL+FCNTV S RA D LR+ + A +YHGEVPS +R+A L F+AG LV TD+AARGLD+P+V HV+MFDFPLNP+DYLHRSGRTARMGA+GRVTSLLAKRD VLAAAIE A
Sbjct: 285 RTLIFCNTVASARAVDHALRDAGVAAAAYHGEVPSAQRAAALAAFRAGSPPRLVATDVAARGLDLPEVGHVIMFDFPLNPVDYLHRSGRTARMGARGRVTSLLAKRDRVLAAAIEAA 401
BLAST of mRNA_H-canaliculatus_F_contig13171.2610.1 vs. uniprot
Match: A0A6U1QKZ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QKZ5_9STRA) HSP 1 Score: 157 bits (398), Expect = 2.760e-45 Identity = 77/118 (65.25%), Postives = 91/118 (77.12%), Query Frame = 1
Query: 25 KRTLVFCNTVKSCRAADFGLREVDLKALSYHGEVPSDERSANLERFKAGEAKYLVCTDIAARGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQA 378
K+ +VFCNTV SCRAA+ +RE L A YHGE+ S +R N++ FK + LVCTD+A+RGLDMP VDHVVMFDFPLNPID+LHRSGRTARMG G VTS+L K D VLA AIE+A
Sbjct: 39 KQAIVFCNTVASCRAAEHAVREAGLTAQGYHGEINSIQRRENIDAFKNNKFNLLVCTDLASRGLDMPTVDHVVMFDFPLNPIDFLHRSGRTARMGRHGLVTSILTKGDRVLATAIERA 156
BLAST of mRNA_H-canaliculatus_F_contig13171.2610.1 vs. uniprot
Match: S8CAS6_9LAMI (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CAS6_9LAMI) HSP 1 Score: 157 bits (396), Expect = 8.460e-45 Identity = 79/127 (62.20%), Postives = 98/127 (77.17%), Query Frame = 1
Query: 4 EPKTREFKRTLVFCNTVKSCRAADFGLREVDLKALSYHGEVPSDERSANLERFKA--GEAKYLVCTDIAARGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQA 378
EP R +VFCNT+ S RA D L E + ++YHGEVP+++R NL RFK+ G+ LVCTD+AARGLD+ DVDHV+MFDFPLN IDYLHR+GRTARMGAKG+VTSL+AK+D VLA+ IE+A
Sbjct: 97 EPSLSRGNRVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAEQRVENLGRFKSDDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDWVLASCIEEA 222
BLAST of mRNA_H-canaliculatus_F_contig13171.2610.1 vs. uniprot
Match: V7C3H3_PHAVU (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7C3H3_PHAVU) HSP 1 Score: 152 bits (384), Expect = 9.830e-43 Identity = 77/127 (60.63%), Postives = 99/127 (77.95%), Query Frame = 1
Query: 4 EPKTREFKRTLVFCNTVKSCRAADFGLREVDLKALSYHGEVPSDERSANLERFKAG--EAKYLVCTDIAARGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQA 378
EP + R +VFCNT+ S RA D L E + +++YHGEVP+++R NL +FK+ + LVCTD+AARGLD+ DVDHVVMFDFPLN IDYLHR+GRTARMGAKG+VTSL+A++DL LA+ IE+A
Sbjct: 3 EPSLAKGNRVMVFCNTLDSSRAVDHFLSENQISSVNYHGEVPAEQRVENLRKFKSDGDDCPTLVCTDLAARGLDL-DVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVARKDLDLASKIEEA 128
BLAST of mRNA_H-canaliculatus_F_contig13171.2610.1 vs. uniprot
Match: A0A2C9WF46_MANES (Uncharacterized protein n=2 Tax=Crotonoideae TaxID=235631 RepID=A0A2C9WF46_MANES) HSP 1 Score: 159 bits (403), Expect = 9.840e-43 Identity = 79/131 (60.31%), Postives = 103/131 (78.63%), Query Frame = 1
Query: 4 EPKTREFKRTLVFCNTVKSCRAADFGLREVDLKALSYHGEVPSDERSANLERFKA--GEAKYLVCTDIAARGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQASTRS 390
EP + R +VFCNT+ S RA D L E + ++YHGEVP+++R NL++FK+ G+ LVCTD+AARGLD+ DVDHV+MFDFPLN IDYLHR+GRTARMGAKG+VTSL+AKRD++LAA IE+A ++
Sbjct: 367 EPSLAKGNRVMVFCNTLNSSRAVDHFLAENQISTVNYHGEVPAEQRVENLQKFKSDDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKRDVLLAARIEEAMRKN 496
BLAST of mRNA_H-canaliculatus_F_contig13171.2610.1 vs. uniprot
Match: A0A426YZ33_ENSVE (Helicase C-terminal domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426YZ33_ENSVE) HSP 1 Score: 151 bits (382), Expect = 9.980e-43 Identity = 76/121 (62.81%), Postives = 96/121 (79.34%), Query Frame = 1
Query: 34 LVFCNTVKSCRAADFGLREVDLKALSYHGEVPSDERSANLERFKA--GEAKYLVCTDIAARGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQASTRS 390
+VFCNT+ S RA D L E + ++YHGEVP+DER NL +FK+ G+ LVCTD+AARGLD+ DVDHV+MFDFPLN IDYLHR+GRTARMGAKG+VTSL+AK+D+ LA IE+A ++
Sbjct: 1 MVFCNTLNSSRAVDHFLTENQIFTVNYHGEVPADERVENLRKFKSEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDIPLAIRIEEAMKKN 120 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13171.2610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13171.2610.1 >prot_H-canaliculatus_F_contig13171.2610.1 ID=prot_H-canaliculatus_F_contig13171.2610.1|Name=mRNA_H-canaliculatus_F_contig13171.2610.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp MPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIback to top mRNA from alignment at H-canaliculatus_F_contig13171:199..3242- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig13171.2610.1 ID=mRNA_H-canaliculatus_F_contig13171.2610.1|Name=mRNA_H-canaliculatus_F_contig13171.2610.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3044bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13171:199..3242- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13171:199..3242- >mRNA_H-canaliculatus_F_contig13171.2610.1 ID=mRNA_H-canaliculatus_F_contig13171.2610.1|Name=mRNA_H-canaliculatus_F_contig13171.2610.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13171:199..3242- (Hapterophycus canaliculatus Oshoro5f female)back to top |