mRNA_H-canaliculatus_F_contig13167.2606.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13167.2606.1
Unique NamemRNA_H-canaliculatus_F_contig13167.2606.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13167.2606.1 vs. uniprot
Match: A0A7S2Y0K4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0K4_9STRA)

HSP 1 Score: 306 bits (785), Expect = 1.360e-104
Identity = 145/155 (93.55%), Postives = 150/155 (96.77%), Query Frame = 1
Query:    1 WGKAPGHLNSDGQNLLVFGCKFGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKELNELVSSYQ 465
            WG APGHLNSDG+NLLVFG +FGNVFIGVQP+FGYEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSG CYPDRLINSIPN+YYYAANNPSEATIAKRRSYA+TISYLTPPAENAGLYKGLKEL ELV SYQ
Sbjct:   36 WGPAPGHLNSDGKNLLVFGKQFGNVFIGVQPSFGYEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGTCYPDRLINSIPNLYYYAANNPSEATIAKRRSYASTISYLTPPAENAGLYKGLKELGELVGSYQ 190          
BLAST of mRNA_H-canaliculatus_F_contig13167.2606.1 vs. uniprot
Match: D7FW04_ECTSI (Magnesium chelatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW04_ECTSI)

HSP 1 Score: 325 bits (834), Expect = 6.240e-101
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1
Query:    1 WGKAPGHLNSDGQNLLVFGCKFGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKELNELVSSYQ 465
            WGKAPGHLNSDGQNLLVFGCKFGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKELNELVSSYQ
Sbjct:  635 WGKAPGHLNSDGQNLLVFGCKFGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKELNELVSSYQ 789          
BLAST of mRNA_H-canaliculatus_F_contig13167.2606.1 vs. uniprot
Match: A0A7S2TVV7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TVV7_9EUKA)

HSP 1 Score: 289 bits (739), Expect = 1.170e-97
Identity = 134/155 (86.45%), Postives = 147/155 (94.84%), Query Frame = 1
Query:    1 WGKAPGHLNSDGQNLLVFGCKFGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKELNELVSSYQ 465
            WG  PG+LNSDG+NLLV+G +FGNVFIGVQP+FGYEGDPMRLLF+KSASPHHGFAAYY+YLEK+F A+AVLHFGTHGSLEFMPGKQVGMSG CYPDRLI+S+PN+YYYAANNPSEATIAKRR YA+TISYLTPPAENAGLYKGLKEL ELV SYQ
Sbjct:   13 WGPPPGNLNSDGENLLVYGKEFGNVFIGVQPSFGYEGDPMRLLFAKSASPHHGFAAYYSYLEKVFGANAVLHFGTHGSLEFMPGKQVGMSGKCYPDRLIHSLPNLYYYAANNPSEATIAKRRGYASTISYLTPPAENAGLYKGLKELGELVGSYQ 167          
BLAST of mRNA_H-canaliculatus_F_contig13167.2606.1 vs. uniprot
Match: A0A7S3LF30_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LF30_9STRA)

HSP 1 Score: 295 bits (755), Expect = 5.300e-97
Identity = 138/155 (89.03%), Postives = 149/155 (96.13%), Query Frame = 1
Query:    1 WGKAPGHLNSDGQNLLVFGCKFGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKELNELVSSYQ 465
            WG APG+LNSDGQNLLV+G +FGNVFIGVQP+FGYEGDPMRLLF+KSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSG CYPDRLI+S+P+ Y YAANNPSEATIAKRRSY+AT+SYLTPPAENAGLYKGLKEL EL+SSYQ
Sbjct:  203 WGPAPGNLNSDGQNLLVYGKQFGNVFIGVQPSFGYEGDPMRLLFAKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGTCYPDRLISSLPSAYLYAANNPSEATIAKRRSYSATVSYLTPPAENAGLYKGLKELKELISSYQ 357          
BLAST of mRNA_H-canaliculatus_F_contig13167.2606.1 vs. uniprot
Match: A0A7S2SP26_9STRA (Magnesium chelatase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP26_9STRA)

HSP 1 Score: 301 bits (771), Expect = 7.340e-96
Identity = 142/155 (91.61%), Postives = 149/155 (96.13%), Query Frame = 1
Query:    1 WGKAPGHLNSDGQNLLVFGCKFGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKELNELVSSYQ 465
            WG APGHLNSDGQ+LLVFG  FGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYL++IF ADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLI + PN+YYYAANNPSEATIAKRRSY+ATISYLTPPAENAGLYKGLKELNELVSSY+
Sbjct:  430 WGPAPGHLNSDGQDLLVFGATFGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLQEIFGADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLIGNTPNLYYYAANNPSEATIAKRRSYSATISYLTPPAENAGLYKGLKELNELVSSYK 584          
BLAST of mRNA_H-canaliculatus_F_contig13167.2606.1 vs. uniprot
Match: A0A835YVC9_9STRA (Magnesium chelatase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC9_9STRA)

HSP 1 Score: 311 bits (796), Expect = 1.140e-95
Identity = 146/155 (94.19%), Postives = 150/155 (96.77%), Query Frame = 1
Query:    1 WGKAPGHLNSDGQNLLVFGCKFGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKELNELVSSYQ 465
            WGKAPGHLNSDGQNLL+FG KFGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLEK+F ADAVLHFGTHGSLEFMPGKQVGMSG CYPDRLINSIPN+YYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKEL EL+ SYQ
Sbjct:  626 WGKAPGHLNSDGQNLLIFGRKFGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLEKVFGADAVLHFGTHGSLEFMPGKQVGMSGTCYPDRLINSIPNLYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKELGELIGSYQ 780          
BLAST of mRNA_H-canaliculatus_F_contig13167.2606.1 vs. uniprot
Match: A0A7S0MDR9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MDR9_9CRYP)

HSP 1 Score: 298 bits (764), Expect = 1.290e-95
Identity = 139/155 (89.68%), Postives = 150/155 (96.77%), Query Frame = 1
Query:    1 WGKAPGHLNSDGQNLLVFGCKFGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKELNELVSSYQ 465
            WG+ PG LNSDGQNLLV+G +FGNVFIGVQP+FGYEGDPMRLLFSKSASPHHGFAAY+TY+EK+FKADA+LHFGTHGSLEFMPGKQVGMS ACYPDRLINS+PN+YYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKEL ELVSSY+
Sbjct:  344 WGRPPGQLNSDGQNLLVYGKRFGNVFIGVQPSFGYEGDPMRLLFSKSASPHHGFAAYHTYVEKVFKADALLHFGTHGSLEFMPGKQVGMSSACYPDRLINSLPNLYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKELGELVSSYK 498          
BLAST of mRNA_H-canaliculatus_F_contig13167.2606.1 vs. uniprot
Match: A0A5B7BWK4_DAVIN (Putative magnesium chelatase H subunit (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BWK4_DAVIN)

HSP 1 Score: 293 bits (749), Expect = 1.790e-95
Identity = 136/155 (87.74%), Postives = 149/155 (96.13%), Query Frame = 1
Query:    1 WGKAPGHLNSDGQNLLVFGCKFGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKELNELVSSYQ 465
            WGKAPG+LNSDG+NLLV+G ++GNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYY+++EKIFKADAVLHFGTHGSLEFMPGKQVGMS  CYPD LI +IPN+YYYAANNPSEATIAKRRSYA TISYLTPPAENAGLYKGLK+L+EL+SSYQ
Sbjct:  303 WGKAPGNLNSDGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQ 457          
BLAST of mRNA_H-canaliculatus_F_contig13167.2606.1 vs. uniprot
Match: A0A1D6JHW9_MAIZE (Magnesium-chelatase subunit ChlH chloroplastic n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6JHW9_MAIZE)

HSP 1 Score: 293 bits (751), Expect = 3.790e-95
Identity = 136/155 (87.74%), Postives = 149/155 (96.13%), Query Frame = 1
Query:    1 WGKAPGHLNSDGQNLLVFGCKFGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKELNELVSSYQ 465
            WGK PGHLNSDG+NLLV+G ++GNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYT++EKIF+ADAVLHFGTHGSLEFMPGKQVGMS AC+PD LI +IPNIYYYAANNPSEAT+AKRRSYA TISYLTPPAENAGLYKGLK+L+EL+SSYQ
Sbjct:  138 WGKPPGHLNSDGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTFVEKIFQADAVLHFGTHGSLEFMPGKQVGMSDACFPDSLIGNIPNIYYYAANNPSEATVAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQ 292          
BLAST of mRNA_H-canaliculatus_F_contig13167.2606.1 vs. uniprot
Match: A0A0G4GDA4_VITBC (Magnesium chelatase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDA4_VITBC)

HSP 1 Score: 309 bits (791), Expect = 4.130e-95
Identity = 146/155 (94.19%), Postives = 152/155 (98.06%), Query Frame = 1
Query:    1 WGKAPGHLNSDGQNLLVFGCKFGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLINSIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKELNELVSSYQ 465
            WGKAPG+LNSDGQN+LVFG +FGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSG CYPDRLINSIPN+YYYAANNPSEATIAKRRSY+ATISYLTPPAENAGLYKGLKEL+ELV SYQ
Sbjct:  565 WGKAPGNLNSDGQNMLVFGKQFGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGTCYPDRLINSIPNLYYYAANNPSEATIAKRRSYSATISYLTPPAENAGLYKGLKELSELVKSYQ 719          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13167.2606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2Y0K4_9STRA1.360e-10493.55Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D7FW04_ECTSI6.240e-101100.00Magnesium chelatase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S2TVV7_9EUKA1.170e-9786.45Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S3LF30_9STRA5.300e-9789.03Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S2SP26_9STRA7.340e-9691.61Magnesium chelatase (Fragment) n=1 Tax=Rhizochromu... [more]
A0A835YVC9_9STRA1.140e-9594.19Magnesium chelatase n=2 Tax=Tribonema minus TaxID=... [more]
A0A7S0MDR9_9CRYP1.290e-9589.68Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A5B7BWK4_DAVIN1.790e-9587.74Putative magnesium chelatase H subunit (Fragment) ... [more]
A0A1D6JHW9_MAIZE3.790e-9587.74Magnesium-chelatase subunit ChlH chloroplastic n=1... [more]
A0A0G4GDA4_VITBC4.130e-9594.19Magnesium chelatase n=2 Tax=Vitrella brassicaformi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13167contigH-canaliculatus_F_contig13167:83..1326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score326.6
Seed ortholog evalue6.1e-87
Seed eggNOG ortholog2880.D7FW04
Preferred nameCHLH
KEGG rclassRC01012
KEGG koko:K03403
KEGG ReactionR03877
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009532,GO:0009536,GO:0009570,GO:0009706,GO:0009941,GO:0010007,GO:0016020,GO:0016851,GO:0016874,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032991,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0051002,GO:0051003,GO:1902494
EggNOG free text desc.ligase activity, forming nitrogen-metal bonds
EggNOG OGs2QT3B@2759,COG1429@1
EC6.6.1.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size465
Cds size465
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13167.2606.1prot_H-canaliculatus_F_contig13167.2606.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13167 83..1326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.2495444-CDS-H-canaliculatus_F_contig13167:82..1901622929054.2495444-CDS-H-canaliculatus_F_contig13167:82..190Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13167 83..190 +
1696845662.1261425-CDS-H-canaliculatus_F_contig13167:82..1901696845662.1261425-CDS-H-canaliculatus_F_contig13167:82..190Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13167 83..190 +
1622929054.2643805-CDS-H-canaliculatus_F_contig13167:482..8001622929054.2643805-CDS-H-canaliculatus_F_contig13167:482..800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13167 483..800 +
1696845662.1482844-CDS-H-canaliculatus_F_contig13167:482..8001696845662.1482844-CDS-H-canaliculatus_F_contig13167:482..800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13167 483..800 +
1622929054.2831852-CDS-H-canaliculatus_F_contig13167:1287..13261622929054.2831852-CDS-H-canaliculatus_F_contig13167:1287..1326Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13167 1288..1326 +
1696845662.159432-CDS-H-canaliculatus_F_contig13167:1287..13261696845662.159432-CDS-H-canaliculatus_F_contig13167:1287..1326Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13167 1288..1326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13167.2606.1

>prot_H-canaliculatus_F_contig13167.2606.1 ID=prot_H-canaliculatus_F_contig13167.2606.1|Name=mRNA_H-canaliculatus_F_contig13167.2606.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=155bp
WGKAPGHLNSDGQNLLVFGCKFGNVFIGVQPTFGYEGDPMRLLFSKSASP
HHGFAAYYTYLEKIFKADAVLHFGTHGSLEFMPGKQVGMSGACYPDRLIN
SIPNIYYYAANNPSEATIAKRRSYAATISYLTPPAENAGLYKGLKELNEL
VSSYQ
back to top

mRNA from alignment at H-canaliculatus_F_contig13167:83..1326+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13167.2606.1 ID=mRNA_H-canaliculatus_F_contig13167.2606.1|Name=mRNA_H-canaliculatus_F_contig13167.2606.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1244bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13167:83..1326+ (Hapterophycus canaliculatus Oshoro5f female)
TGGGGCAAAGCCCCCGGCCACCTCAACTCGGACGGCCAAAACCTCCTCGT CTTCGGCTGCAAGTTCGGAAACGTCTTCATCGGCGTGCAGCCCACCTTCG GATACGAGGTACAAAACTGCACGCATGGATGGGATTTCGTTGCGGTGGTC GCCCACGTTTCCGGAGGGCGGGGTTTTGCGGAAAAGCACGCGCGAATATT TGTACGGTCGCCGTTTCTGCTTGTGCCCTGAGGAAAACCTACGTGAGGGG GCTGAACGTTTTGGAGACAAGACGATGCTCGCAGCGTGGGAAGCGCAGAG CGGCGAGGCGGATATTATCATTTCATGATCGACTGACGAGTGATCCCCCC CCTCCCGCCGCCACCGGTTACTCCATTTCTATCGTTCACTACAAAAAAAG GGCGACCCGATGCGGCTCCTATTCTCGAAGTCCGCGTCTCCCCACCACGG CTTCGCCGCGTACTACACCTACCTGGAGAAGATCTTCAAGGCCGACGCCG TCCTGCACTTCGGCACTCACGGCTCCCTGGAGTTCATGCCCGGCAAGCAG GTCGGCATGTCCGGCGCCTGCTACCCCGACCGCCTCATCAACTCCATCCC AAACATCTACTACTACGCGGCCAACAACCCCTCGGAGGCGACCATCGCCA AGCGCCGCTCGTACGCCGCCACGATCTCGTACCTCACTCCTCCCGCCGAG AACGCCGGTCTCTACAAGGTGAGCCTTGTTCGCGGGTTCCTCTGACGAGC CTGATTTTCATTCGTCCCGTCGCGTTGTTCTTGTTCTCACCTTTGGTCGT GCGCGGAAGGCAGCGGCGGAAGAGCTCGACGTTCGCTGAAATCGACGCCG GCTGCGTCTGACTTGAAGGGTGGTTTGGACGGGTTTCGATTGCTCTCTTT CTCGTGGTGCGTCAGGATCGGGTTCGTTTTTTTCAGATGCGAACAGTGCG TAGAAATCTTCGATGGCATGCAACAAACTCTCCTCCGTGACGGGCGTCGG TTTGGTCACAAAAACTGCCGTACAGCGAGGAGAATGAAGACAGGAATGCC GGGGGCGCCCGACGAACAGTGGGCCGTCAGCCACGGCAATTAGAGTTGTG CACAGATTTTGCTTGGAACCACCCTCCCGCCCCCCCTCCTCTGCACCTCG ATGCATGACACCTTCGCCCTGCACCCCGCCTGGCCTGGACCGTTCGTTTT TGCAGGGACTGAAGGAGCTCAACGAGCTGGTGTCGTCGTACCAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13167:83..1326+

>mRNA_H-canaliculatus_F_contig13167.2606.1 ID=mRNA_H-canaliculatus_F_contig13167.2606.1|Name=mRNA_H-canaliculatus_F_contig13167.2606.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=930bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13167:83..1326+ (Hapterophycus canaliculatus Oshoro5f female)
TGGGGCAAAGCCCCCGGCCACCTCAACTCGGACGGCCAAAACCTCCTCGT
CTTCGGCTGCAAGTTCGGAAACGTCTTCATCGGCGTGCAGCCCACCTTCG
GATACGAGTGGGGCAAAGCCCCCGGCCACCTCAACTCGGACGGCCAAAAC
CTCCTCGTCTTCGGCTGCAAGTTCGGAAACGTCTTCATCGGCGTGCAGCC
CACCTTCGGATACGAGGGCGACCCGATGCGGCTCCTATTCTCGAAGTCCG
CGTCTCCCCACCACGGCTTCGCCGCGTACTACACCTACCTGGAGAAGATC
TTCAAGGCCGACGCCGTCCTGCACTTCGGCACTCACGGCTCCCTGGAGTT
CATGCCCGGCAAGCAGGTCGGCATGTCCGGCGCCTGCTACCCCGACCGCC
TCATCAACTCCATCCCAAACATCTACTACTACGCGGCCAACAACCCCTCG
GAGGCGACCATCGCCAAGCGCCGCTCGTACGCCGCCACGATCTCGTACCT
CACTCCTCCCGCCGAGAACGCCGGTCTCTACAAGGGCGACCCGATGCGGC
TCCTATTCTCGAAGTCCGCGTCTCCCCACCACGGCTTCGCCGCGTACTAC
ACCTACCTGGAGAAGATCTTCAAGGCCGACGCCGTCCTGCACTTCGGCAC
TCACGGCTCCCTGGAGTTCATGCCCGGCAAGCAGGTCGGCATGTCCGGCG
CCTGCTACCCCGACCGCCTCATCAACTCCATCCCAAACATCTACTACTAC
GCGGCCAACAACCCCTCGGAGGCGACCATCGCCAAGCGCCGCTCGTACGC
CGCCACGATCTCGTACCTCACTCCTCCCGCCGAGAACGCCGGTCTCTACA
AGGGACTGAAGGAGCTCAACGAGCTGGTGTCGTCGTACCAGGGACTGAAG
GAGCTCAACGAGCTGGTGTCGTCGTACCAG
back to top