mRNA_H-canaliculatus_F_contig1316.2600.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1316.2600.1
Unique NamemRNA_H-canaliculatus_F_contig1316.2600.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1316.2600.1 vs. uniprot
Match: A0A6H5KNC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC6_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 2.300e-41
Identity = 83/153 (54.25%), Postives = 104/153 (67.97%), Query Frame = 2 
Query:  356 MAFFNEPQQEE-----VEKNDGIDQRRLALLRSFEARLWEMNVQIQGIKCIGFGHEGHAGIPSELIQRCSRVGVSVVRDSLEGFRPLSLWPPSLPLLLAEEVEPQQLRLSMVTAGLAGAGGCRQVRELIYLAPLSVQDFHTLVEFMLSYHQWC 799
            MAFFN+ Q+EE     V+       +RLAL+RSFE RLWE++VQ+QGIKCIGFG +G A  PSE+IQRCS VGVSV +++  GF  LS WP S PLLLAE V    LRL +VTA      G  +VR L++L+P++  DF TL+ FML   QWC
Sbjct:    1 MAFFNDQQKEETTDDEVQAEYVAGDQRLALMRSFETRLWELDVQVQGIKCIGFG-QGQAAPPSEVIQRCSDVGVSVAQENPGGFAALSPWPVSCPLLLAESVGSHFLRLYLVTAD-----GGHEVRSLLFLSPITTHDFDTLIHFMLGMRQWC 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1316.2600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNC6_9PHAE2.300e-4154.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1316contigH-canaliculatus_F_contig1316:11937..15330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1083
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1316.2600.1prot_H-canaliculatus_F_contig1316.2600.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1316 12292..15052 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.5862756-UTR-H-canaliculatus_F_contig1316:11936..122911622929053.5862756-UTR-H-canaliculatus_F_contig1316:11936..12291Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1316 11937..12291 +
1696845661.8584461-UTR-H-canaliculatus_F_contig1316:11936..122911696845661.8584461-UTR-H-canaliculatus_F_contig1316:11936..12291Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1316 11937..12291 +
1622929053.6486452-UTR-H-canaliculatus_F_contig1316:15052..153301622929053.6486452-UTR-H-canaliculatus_F_contig1316:15052..15330Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1316 15053..15330 +
1696845661.8981466-UTR-H-canaliculatus_F_contig1316:15052..153301696845661.8981466-UTR-H-canaliculatus_F_contig1316:15052..15330Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1316 15053..15330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.6100485-CDS-H-canaliculatus_F_contig1316:12291..124081622929053.6100485-CDS-H-canaliculatus_F_contig1316:12291..12408Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 12292..12408 +
1696845661.8693984-CDS-H-canaliculatus_F_contig1316:12291..124081696845661.8693984-CDS-H-canaliculatus_F_contig1316:12291..12408Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 12292..12408 +
1622929053.6322904-CDS-H-canaliculatus_F_contig1316:14719..150521622929053.6322904-CDS-H-canaliculatus_F_contig1316:14719..15052Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 14720..15052 +
1696845661.8858063-CDS-H-canaliculatus_F_contig1316:14719..150521696845661.8858063-CDS-H-canaliculatus_F_contig1316:14719..15052Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1316 14720..15052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1316.2600.1

>prot_H-canaliculatus_F_contig1316.2600.1 ID=prot_H-canaliculatus_F_contig1316.2600.1|Name=mRNA_H-canaliculatus_F_contig1316.2600.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=150bp
MAFFNEPQQEEVEKNDGIDQRRLALLRSFEARLWEMNVQIQGIKCIGFGH
EGHAGIPSELIQRCSRVGVSVVRDSLEGFRPLSLWPPSLPLLLAEEVEPQ
QLRLSMVTAGLAGAGGCRQVRELIYLAPLSVQDFHTLVEFMLSYHQWCA*
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mRNA from alignment at H-canaliculatus_F_contig1316:11937..15330+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1316.2600.1 ID=mRNA_H-canaliculatus_F_contig1316.2600.1|Name=mRNA_H-canaliculatus_F_contig1316.2600.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3394bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1316:11937..15330+ (Hapterophycus canaliculatus Oshoro5f female)
CAACGGATCCCCGCCGCCAGTGATCCCGGCTGTCACAGCAAGAACAAGCG
ATCCTTTGATCCATTTCCAACGGTCGATCATGTATCTTTGGACCACCCGC
GCATCTGCGTGAAATCACTCTGCACGCTTGGGCTTCACGTCCGCACAACT
TCACAAGTACACCTCCTCGCCACACCCTCATTCCACCTCTCTTCGAACTT
CCGCCGACGATCTCCGACTCTTCTGTTCTCCATACGTATCTCTCTCCTGG
TTTCTGCGAAGAACTGGGTAAAGACTCCCCCCCGTCCGCTTGCGTGTTCC
CAGCTAGAGGATAGCAGATCAACGCTCACACCTTGTTTCCGCCACCTTCA
AGGAGATGGCCTTCTTCAACGAACCCCAACAAGAGGAAGTAGAGAAGAAT
GACGGCATCGACCAAAGGCGGCTGGCTCTGTTGCGGTCGTTCGAAGCAAG
GCTATGGGAGATGAATGTGCAGGTGGGAGAAACTGATGACCAAGACTGAC
AACACAACAATTGCAGAGAGGGATGGCCTCCGCACAGGATAGATAAAGAC
TTGTATGTGTCTTCACCCGCAGCATGTAGTCTAGGCCTACTTGTAGGCGT
TTGCCGACATCCACAAGAATACAGGAATCTGCGTAGGCCAAAATCGTCCC
GATGTAAGGACTTGTGTGTCTGTCATAGACCTTCTGACTGTTGTCCCATC
CACGTCAGGAGGAGCGCGGTCGCAACCTTTCATTACCTCTACAACATGAT
TGTCTCTATTTTACCCTGCAAGCTTTCTGTTTCTTCTCAGATTCGGCAAA
ATATGCAGACGAGGTACTTTTTTGGGGGTCGTCTTTTACCTCTCTCTCCT
TGTTGAGCCGCTCCTTCTACCCGGATCACATCGTGTTATTTCTGGTTTTC
GTGCTTGGTCACCGTCCGGGACTGACTGCTATCTGCTGTGTCGTCACACC
CAACTCCAAACTTCAAACAAGCCTGTGCTGTTGTTGTTCTAGGTCGGATG
AACAACCGTTCTGTGAAATCAGGAACAACAACCTGAGAAATAGCCTCTCA
GTGTGAATGTTGATGTGTGCGTCTGTGGGTGTGTATCTGTCTATGTGCGT
GTTGTTGGTCTACTGAAATACTGCTACTTGTACACTGCTGCTGCCGCTGT
TGAAATCTTGAAATCTCTTCTTGTACATTGTACCGCTGTTCATTCAGCTG
ACTTCCTAAATGCGTACTAACTCCTACGCAGGTTAACTTTATGTATGTAG
GAGGTGAGAAATATATCTCTGGAACCAACGAAGACAGAACAACGTTTTTG
TGACCATGAACAACATCACACACACACGCACAGCTCCTCCTCGCAGGTTC
AAAGATCTGAACCTTCGTGGAACTAACAGCTAGCTGTGTCCGATCCTAAC
AACTACAAGTACAGGCTAGATACTTGGAAGTAGTGTTAGTATTTCTTTGA
TTATAAAGAAAGACAAGCCGCATTCCATTTATTTACTGTATCATGGCTTT
TTTTCTATGGTGATCCTTTTAAGGGTCCATGAAATCATGAATATTTAACG
GACTACCTTCCGTGGAATATTCCACGAATATGTATGAAATTCCGTCAAAT
ATTTTCATCACGTTTGTTTGTGAACGTCGAAAACTATGGAGAGGCCACCT
TTATTTAGAAAGGTGGTACCGCCCTCGTAATTAATGTCTTTCGAGGACGA
AGATCTTGTCTGAAGGTGATGACCTCCACAAAACACTTTTTTGTACTTGT
ACCCCGAGTATTTATTTGTTGCTTGTTTGTAGGAATAATAGACGAAACCT
ACATCTTCCATTATCAGCTTCACATTTTTTACTTTGTTTGTTGGAATTCG
TAGCGTTTGCGGCGTAAGTTCACGCGTCTGACAAGTCTGTTTGATCATTT
TCTGAACTGCAACATACTGTATCATTTAAATAAAGTATTAGATTTTGTAG
ATAAGCAAAAGCAGTGCAACGCTCGACGCTGATGGGTCAACTCCCCCTGT
ACCGTTTTTTGGCATATTTTTTAGAGGTATACCGCTCCCGAGGTTGTCGG
GTTGGGCTTCATCACTTTTTGTCGTGGGGTTCACCGTTTCCGGACGCAGA
AAAATGGTACACATGTACGAACTTCCCGCCTTATGGGCCTGTCGATCCTA
TCAACTCCCAGAGACTCTTCGGAAGCACAACAACTAATCGTTAGATGCCA
GACCTGTTCGGCGTTCGATCTACCCAACTCGGGCGGAAAATAGTATCATG
CAGCTGCTTGCTACATGCGCGACCTTCTCTCAAAAATTCACAGCTCGCCA
CCGGGCTGTAACGAGTCGGTTGGTTACCGGTTGCTTGGGGACACCCCGCA
GCGGGCACGCTCTCTTCGCCACGCAGCGAGAATAGTATAGAGTTTCGGAT
GCGATCGCCCTACATCAGTGTGCTCAGGTTACAAATTAGAGCTCTCAGGC
TCTCAGGGTGAAAGCTCAGGATGGGTGGGACACAGATTAATCCAGCACCC
AATTGTCGGAATAATGCTCAGGAACAAAAAGGCGATACGTCCTCTCTCTC
TGTGACCTGACTTCATTCCATGGTGTTCAACAGCGGCAAGGGACCTATGG
GTTTCCTCCTTAGCCTCCGGCACGCCGATGGCCGACCACCCTGGCCCCGC
CACTCCCTCGATTGTCCCGAAACCTGCGCCTCGTTTTCCTTTGATTGTTC
ATATACGTTCTGGAATGCATACCGTCTTGAACACGCACTCCCTGCGTTTG
CCCGTCTCCCGACCTTGAACCTTCCATTGCCAGATACAAGGCATCAAGTG
CATCGGATTTGGACACGAAGGGCACGCGGGCATTCCGAGCGAATTGATTC
AGAGGTGCTCCAGAGTGGGCGTCTCCGTGGTGCGCGACAGCCTGGAAGGC
TTTCGCCCTCTCTCGCTTTGGCCCCCGTCGCTGCCCTTACTTCTCGCAGA
GGAAGTCGAGCCACAACAGCTCAGGCTTTCGATGGTGACAGCCGGCTTGG
CAGGCGCGGGCGGGTGCCGCCAGGTCCGCGAACTGATTTATTTGGCTCCC
TTGTCCGTCCAGGACTTCCACACACTCGTGGAATTTATGCTCTCCTATCA
CCAGTGGTGCGCGTAAGCCTTGCCGAGTCATGATGAGCAACTCAGTGCGC
TGTTCCTTGAAGCAGCCCCTTTTGCGCCACTTTATGAGGACGGAATATTC
CAGAATTTCCGTGCGGGTGGCGGGGTTAGAGGCGTTTCCACCCGTAATGC
CCTCTTTGCTGTTTGATCATTCTTACATTTTGTGGTGCGTACCCATGATG
GGCGCGGTGACCGCGAGAATACGTCAAATTATTTTATCACGCCGCTGTCC
ATGCCGTAGTTTTGATCGACATGGGAGAGACGATGTCGGTTCTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1316:11937..15330+

>mRNA_H-canaliculatus_F_contig1316.2600.1 ID=mRNA_H-canaliculatus_F_contig1316.2600.1|Name=mRNA_H-canaliculatus_F_contig1316.2600.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=900bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1316:11937..15330+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCTTCTTCAACGAACCCCAACAAGAGGAAGTAGAGAAGAATGACGG
CATCGACCAAAGGCGGCTGGCTCTGTTGCGGTCGTTCGAAGCAAGGCTAT
GGGAGATGAATGTGCAGATGGCCTTCTTCAACGAACCCCAACAAGAGGAA
GTAGAGAAGAATGACGGCATCGACCAAAGGCGGCTGGCTCTGTTGCGGTC
GTTCGAAGCAAGGCTATGGGAGATGAATGTGCAGATACAAGGCATCAAGT
GCATCGGATTTGGACACGAAGGGCACGCGGGCATTCCGAGCGAATTGATT
CAGAGGTGCTCCAGAGTGGGCGTCTCCGTGGTGCGCGACAGCCTGGAAGG
CTTTCGCCCTCTCTCGCTTTGGCCCCCGTCGCTGCCCTTACTTCTCGCAG
AGGAAGTCGAGCCACAACAGCTCAGGCTTTCGATGGTGACAGCCGGCTTG
GCAGGCGCGGGCGGGTGCCGCCAGGTCCGCGAACTGATTTATTTGGCTCC
CTTGTCCGTCCAGGACTTCCACACACTCGTGGAATTTATGCTCTCCTATC
ACCAGTGGTGCGCGTAAATACAAGGCATCAAGTGCATCGGATTTGGACAC
GAAGGGCACGCGGGCATTCCGAGCGAATTGATTCAGAGGTGCTCCAGAGT
GGGCGTCTCCGTGGTGCGCGACAGCCTGGAAGGCTTTCGCCCTCTCTCGC
TTTGGCCCCCGTCGCTGCCCTTACTTCTCGCAGAGGAAGTCGAGCCACAA
CAGCTCAGGCTTTCGATGGTGACAGCCGGCTTGGCAGGCGCGGGCGGGTG
CCGCCAGGTCCGCGAACTGATTTATTTGGCTCCCTTGTCCGTCCAGGACT
TCCACACACTCGTGGAATTTATGCTCTCCTATCACCAGTGGTGCGCGTAA
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