mRNA_H-canaliculatus_F_contig13142.2593.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13142.2593.1
Unique NamemRNA_H-canaliculatus_F_contig13142.2593.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13142.2593.1 vs. uniprot
Match: D7FWX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX9_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.300e-30
Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:  396 AAKLGLSVVLKGIKYMEVFLSRQEPFFGAWYNYTAEVPEQMSAAGWHVEPDVENGWRVGSHEFARLLYLAQLRHIACDGVWVQQFVFPILATVLQ 680
            A KL LSVVL G+KYME+FL  Q+  FGAWYNYT++V E++   GWHV PDV+N W VGS   A L++LAQLR IA  G W+ QFVFPILATV+Q
Sbjct:  115 AVKLRLSVVLYGLKYMEIFLLEQDDHFGAWYNYTSDVRERLEKNGWHVVPDVDNNWHVGSSNCAWLMFLAQLRSIAKPGAWLHQFVFPILATVVQ 209
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BLAST of mRNA_H-canaliculatus_F_contig13142.2593.1 vs. uniprot
Match: A0A6H5KPX1_9PHAE (OTU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX1_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.610e-27
Identity = 56/95 (58.95%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:  396 AAKLGLSVVLKGIKYMEVFLSRQEPFFGAWYNYTAEVPEQMSAAGWHVEPDVENGWRVGSHEFARLLYLAQLRHIACDGVWVQQFVFPILATVLQ 680
            AAKL LSVVL+G+++ME +LS QE  F  W NYT +V ++++AAGW VEPD  +  RVGS E ARL ++AQL +IA  G W+QQFV PILATV+Q
Sbjct:  160 AAKLRLSVVLEGLRHMEAYLSLQEDIFCCWDNYTGDVYDRLTAAGWCVEPDTIDKARVGSRETARLFFVAQLHNIAVKGQWLQQFVLPILATVIQ 254
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BLAST of mRNA_H-canaliculatus_F_contig13142.2593.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.090e-26
Identity = 58/95 (61.05%), Postives = 69/95 (72.63%), Query Frame = 3 
Query:  396 AAKLGLSVVLKGIKYMEVFLSRQEPFFGAWYNYTAEVPEQMSAAGWHVEPDVENGWRVGSHEFARLLYLAQLRHIACDGVWVQQFVFPILATVLQ 680
            A KL LSVVL G+KYME+FL  Q+  FGAWYNYT +V E++   GWHV   V+N W VGS   ARL++LAQLR  A  G W+QQF FPILATV+Q
Sbjct:  135 AVKLRLSVVLYGLKYMELFLLEQDYHFGAWYNYTTDVRERLEKNGWHVV-HVDNNWHVGSSNCARLMFLAQLRSKAKPGAWLQQFAFPILATVVQ 228
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BLAST of mRNA_H-canaliculatus_F_contig13142.2593.1 vs. uniprot
Match: D7FZ28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ28_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.570e-26
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 3 
Query:  396 AAKLGLSVVLKGIKYMEVFLSRQEPFFGAWYNYTAEVPEQMSAAGWHVEPDVENGWRVGSHEFARLLYLAQLRHIACDGVWV 641
            A KL LSVVL G+KYME+FL  Q+  FGAWYNYT++V E++   GWHV PDV+N W VGS   ARL++LAQLR IA  G W+
Sbjct:  129 AVKLRLSVVLYGLKYMEIFLLEQDDHFGAWYNYTSDVRERLEKNGWHVVPDVDNNWHVGSSNCARLMFLAQLRSIAKPGAWL 210
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BLAST of mRNA_H-canaliculatus_F_contig13142.2593.1 vs. uniprot
Match: A0A6H5JL68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL68_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.460e-24
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 3 
Query:  396 AAKLGLSVVLKGIKYMEVFLSRQEPFFGAWYNYTAEVPEQMSAAGWHVEPDVENGWRVGSHEFARLLYLAQL-RHIACDGVWVQQFVFPILATVLQ 680
            AAKL LSV L+G+++ME +LS QE FF  W NY  EV E +   GW +EPD  N  R+GS   ARL+++AQL +H+A +  W+QQF FP+LATV+Q
Sbjct:    9 AAKLRLSVTLEGMRHMEAYLSCQEDFFMCWSNYGDEVREGLPKLGWTIEPDAHNKHRLGSRNCARLMFVAQLIKHVAGNCNWLQQFAFPLLATVIQ 104
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BLAST of mRNA_H-canaliculatus_F_contig13142.2593.1 vs. uniprot
Match: A0A6H5JQH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH9_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.230e-23
Identity = 48/95 (50.53%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:  396 AAKLGLSVVLKGIKYMEVFLSRQEPFFGAWYNYTAEVPEQMSAAGWHVEPDVENGWRVGSHEFARLLYLAQLRHIACDGVWVQQFVFPILATVLQ 680
            AAKL +++VL+G++++E ++S QE FF  W NY  EV +++  +GW +EP ++N  RVGS + ARL+++AQLRH A +  W+QQFVF ILATV+Q
Sbjct:   72 AAKLRVTIVLEGLRHIEAYVSVQEGFFMDWSNYGDEVRDELPKSGWKIEPGLDNKMRVGSRQCARLMFIAQLRHTAQNRRWLQQFVFAILATVIQ 166
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BLAST of mRNA_H-canaliculatus_F_contig13142.2593.1 vs. uniprot
Match: A0A6H5K991_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K991_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.520e-23
Identity = 50/95 (52.63%), Postives = 73/95 (76.84%), Query Frame = 3 
Query:  396 AAKLGLSVVLKGIKYMEVFLSRQEPFFGAWYNYTAEVPEQMSAAGWHVEPDVENGWRVGSHEFARLLYLAQLRHIACDGVWVQQFVFPILATVLQ 680
            AAKL L++VL+G++++E ++S QE FF    NY  EV +++  +GW +EPD++N  RVGS + ARL+++AQLRH A +  W+QQFVFPILATV+Q
Sbjct:  142 AAKLRLAIVLEGLRHIEAYVSVQEDFFMDGSNYGDEVRDELPKSGWKIEPDLDNKMRVGSRQCARLMFIAQLRHTAQNRRWLQQFVFPILATVIQ 236
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BLAST of mRNA_H-canaliculatus_F_contig13142.2593.1 vs. uniprot
Match: A0A6H5KLL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL4_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.050e-22
Identity = 54/97 (55.67%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:  103 QKLLKARAMLDSVQNSPPRGDTTGIAVSNSALEKVKAWAHKQRDPIDDEVLPAASQTEAKLLAKGLSKDNFTAAILNGAFPEDGGGSAAPVWIEGNG 393
            Q L K R MLD V + P   DT+GI V +  L KV  W  K  DPID E+LP ASQT  +L+AKGL KD FTAA+LNG  PEDGGG   P   +GNG
Sbjct:    7 QALAKVRGMLDFVLH-PSSPDTSGIPVGDEKLRKVMEWVSKWEDPIDGELLPGASQTAEELVAKGLFKDKFTAALLNGIEPEDGGGVGTPFESDGNG 102
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BLAST of mRNA_H-canaliculatus_F_contig13142.2593.1 vs. uniprot
Match: D7G3L3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L3_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.990e-21
Identity = 52/89 (58.43%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:  127 MLDSVQNSPPRGDTTGIAVSNSALEKVKAWAHKQRDPIDDEVLPAASQTEAKLLAKGLSKDNFTAAILNGAFPEDGGGSAAPVWIEGNG 393
            MLD V + P   DT+GI V +  L+KV  W  KQ DPID E+LP ASQT  +LLAKGL K  FTAA+LNG  PEDGGG   P   EGNG
Sbjct:    1 MLDFVLH-PSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKGLFKVKFTAALLNGIEPEDGGGVGTPFEREGNG 88
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BLAST of mRNA_H-canaliculatus_F_contig13142.2593.1 vs. uniprot
Match: A0A6H5KB76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB76_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.200e-21
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 3 
Query:  474 FGAWYNYTAEVPEQMSAAGWHVEPDVENGWRVGSHEFARLLYLAQLRHIACDGVWVQQFVFPILATVLQ 680
            FG WYNYT++V +++   GWHV PDV+N W VGS + ARL++LAQLR IA  G W+QQFVFPILATV Q
Sbjct:  134 FGVWYNYTSDVRKRLEKNGWHVVPDVDNNWHVGSSKCARLMFLAQLRSIAKPGAWLQQFVFPILATVAQ 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13142.2593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FWX9_ECTSI1.300e-3063.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPX1_9PHAE2.610e-2758.95OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9T1_9PHAE1.090e-2661.05SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FZ28_ECTSI1.570e-2660.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL68_9PHAE1.460e-2453.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQH9_9PHAE1.230e-2350.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K991_9PHAE1.520e-2352.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KLL4_9PHAE1.050e-2255.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3L3_ECTSI1.990e-2158.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB76_9PHAE4.200e-2163.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13142contigH-canaliculatus_F_contig13142:1207..2457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size682
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13142.2593.1prot_H-canaliculatus_F_contig13142.2593.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13142 1282..2201 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.8296576-UTR-H-canaliculatus_F_contig13142:1206..12811622929052.8296576-UTR-H-canaliculatus_F_contig13142:1206..1281Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13142 1207..1281 +
1696845661.5152621-UTR-H-canaliculatus_F_contig13142:1206..12811696845661.5152621-UTR-H-canaliculatus_F_contig13142:1206..1281Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13142 1207..1281 +
1622929052.8986642-UTR-H-canaliculatus_F_contig13142:2201..24571622929052.8986642-UTR-H-canaliculatus_F_contig13142:2201..2457Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13142 2202..2457 +
1696845661.558063-UTR-H-canaliculatus_F_contig13142:2201..24571696845661.558063-UTR-H-canaliculatus_F_contig13142:2201..2457Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13142 2202..2457 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.8462808-CDS-H-canaliculatus_F_contig13142:1281..14761622929052.8462808-CDS-H-canaliculatus_F_contig13142:1281..1476Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13142 1282..1476 +
1696845661.5291517-CDS-H-canaliculatus_F_contig13142:1281..14761696845661.5291517-CDS-H-canaliculatus_F_contig13142:1281..1476Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13142 1282..1476 +
1622929052.8674486-CDS-H-canaliculatus_F_contig13142:1969..20931622929052.8674486-CDS-H-canaliculatus_F_contig13142:1969..2093Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13142 1970..2093 +
1696845661.5384438-CDS-H-canaliculatus_F_contig13142:1969..20931696845661.5384438-CDS-H-canaliculatus_F_contig13142:1969..2093Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13142 1970..2093 +
1622929052.8827488-CDS-H-canaliculatus_F_contig13142:2169..22011622929052.8827488-CDS-H-canaliculatus_F_contig13142:2169..2201Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13142 2170..2201 +
1696845661.5479174-CDS-H-canaliculatus_F_contig13142:2169..22011696845661.5479174-CDS-H-canaliculatus_F_contig13142:2169..2201Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13142 2170..2201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13142.2593.1

>prot_H-canaliculatus_F_contig13142.2593.1 ID=prot_H-canaliculatus_F_contig13142.2593.1|Name=mRNA_H-canaliculatus_F_contig13142.2593.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=117bp
MSKTANVHYQKLLKARAMLDSVQNSPPRGDTTGIAVSNSALEKVKAWAHK
QRDPIDDEVLPAASQTEAKLLAKGLSKDNFTAAILNGAFPEDGGGSAAPV
WIEGNGRRRSWGSASS*
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mRNA from alignment at H-canaliculatus_F_contig13142:1207..2457+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13142.2593.1 ID=mRNA_H-canaliculatus_F_contig13142.2593.1|Name=mRNA_H-canaliculatus_F_contig13142.2593.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1251bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13142:1207..2457+ (Hapterophycus canaliculatus Oshoro5f female)
TACTTCATCTGCAGAGCAGCAATCATCAGTCTGAACATCGTCTTTGCTCA
GCACTCTTCCAACCCCGCCATTATCATGAGCAAGACCGCGAACGTCCACT
ACCAGAAGCTGCTCAAGGCCAGGGCTATGCTTGATTCTGTCCAGAACTCT
CCTCCCCGCGGTGACACGACCGGAATTGCTGTTTCAAATTCAGCACTGGA
GAAGGTCAAGGCATGGGCCCACAAGCAGCGTGATCCCATCGACGATGAAG
TTCTCCCGGCTGCGTCTCAGGTAGGAACGTCTGAGATTGGGCTACGCACA
ACTTAGGGTTGGGGTTAGTTCCAAAAAGCTGGAACATTTCGAATTCAAAA
ATAATCTTGAACGTGTATGAAGATTCTCCGTACAGTAGATCAGTGACACA
TGCAATGTTTGAACAGCATGTGTAAGCGAATGTGTAAGCAGCAGCACTTC
CACTAGCGACCCCGCTGTGAAGATATTTCAGGTGAAGTGTTGATCAGGCT
GCTCAGGTAGGATGGGCTTTCTCGGCTCGAGTGTGAGGCTCAACAGCTTA
CGGCTTTTGGGGTCATGTACGTTGTTCATACAGAGACCCGTCGAACACCT
GTTGTTCGTGCACTTACTACGCAGGACCGATGCTTGGCGGTTCTACTGTA
GTTCACTGGAAGGCCCGATTGTCCATCTTCGCGACATATCGTTTTCGCCT
TCACACTCTCTATTTTTAAAACAAAATACGCTCTATTTGGCGTTCCTTGT
TCTTGTGTGGCAGACCGAGGCAAAGCTTCTAGCGAAAGGTCTATCGAAAG
ATAACTTCACTGCAGCTATCCTTAACGGGGCTTTTCCTGAGGACGGCGGT
GGAAGTGCCGCTCCGGTGTGGATAGAAGGCAACGGGAATTGCCTGTTCAA
TGCCTGCTCGGCATTCTTTGCGAAGTCGGGACAACGCGGGGTGAGGAGTT
CTGTGAGGGCTCTGGCGGCGAAGCTGGGGCTCAGCGTCGTCTTGAAAGGG
ATAAAGTATATGGAGGTCTTCCTCTCTCGCCAAGAGCCGTTCTTCGGTGC
TTGGTACAACTACACGGCGGAAGTTCCGGAGCAGATGTCCGCTGCTGGCT
GGCACGTGGAGCCCGACGTCGAAAACGGCTGGCGCGTGGGTTCTCATGAG
TTTGCGCGGCTCCTGTATCTCGCGCAGCTACGGCACATTGCCTGCGATGG
AGTATGGGTACAGCAGTTCGTCTTCCCGATCCTCGCCACGGTCCTACAGG
C
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13142:1207..2457+

>mRNA_H-canaliculatus_F_contig13142.2593.1 ID=mRNA_H-canaliculatus_F_contig13142.2593.1|Name=mRNA_H-canaliculatus_F_contig13142.2593.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=702bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13142:1207..2457+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCAAGACCGCGAACGTCCACTACCAGAAGCTGCTCAAGGCCAGGGC
TATGCTTGATTCTGTCCAGAACTCTCCTCCCCGCGGTGACACGACCGGAA
TTGCTGTTTCAAATTCAGCACTGGAGAAGGTCAAGGCATGGGCCCACAAG
CAGCGTGATCCCATCGACGATGAAGTTCTCCCGGCTGCGTCTCAGATGAG
CAAGACCGCGAACGTCCACTACCAGAAGCTGCTCAAGGCCAGGGCTATGC
TTGATTCTGTCCAGAACTCTCCTCCCCGCGGTGACACGACCGGAATTGCT
GTTTCAAATTCAGCACTGGAGAAGGTCAAGGCATGGGCCCACAAGCAGCG
TGATCCCATCGACGATGAAGTTCTCCCGGCTGCGTCTCAGACCGAGGCAA
AGCTTCTAGCGAAAGGTCTATCGAAAGATAACTTCACTGCAGCTATCCTT
AACGGGGCTTTTCCTGAGGACGGCGGTGGAAGTGCCGCTCCGGTGTGGAT
AGAAGGCAACGGGAACCGAGGCAAAGCTTCTAGCGAAAGGTCTATCGAAA
GATAACTTCACTGCAGCTATCCTTAACGGGGCTTTTCCTGAGGACGGCGG
TGGAAGTGCCGCTCCGGTGTGGATAGAAGGCAACGGGAGGCGGCGAAGCT
GGGGCTCAGCGTCGTCTTGAGGCGGCGAAGCTGGGGCTCAGCGTCGTCTT
GA
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