mRNA_H-canaliculatus_F_contig1314.2589.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1314.2589.1
Unique NamemRNA_H-canaliculatus_F_contig1314.2589.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1314.2589.1 vs. uniprot
Match: A0A0G4IJA9_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IJA9_PLABS)

HSP 1 Score: 85.9 bits (211), Expect = 2.950e-16
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:  613 VDGDAPQRDEVCAAVAALKRAAEQFAATLGQLDCPVLHISGESHLFSCYDLGESVLAFYSHMGSENLRSFNTHDADVRLRDLLADIKLL 879
            V  D  + D++   +A LKRAAEQF +TL Q  CPV+H+ G   +FSCY+LG+ +LAFY+ M   +L +++T DAD R+  ++AD++LL
Sbjct:   49 VKPDQERVDDLVLPIAQLKRAAEQFGSTLNQSSCPVVHLRGNRVMFSCYELGDHLLAFYTDMSGVDLMTYDTADADSRMGFIIADLRLL 137
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BLAST of mRNA_H-canaliculatus_F_contig1314.2589.1 vs. uniprot
Match: A0A0H5QGE2_9EUKA (Uncharacterized protein (Fragment) n=2 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QGE2_9EUKA)

HSP 1 Score: 82.4 bits (202), Expect = 9.520e-15
Identity = 36/95 (37.89%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:  613 VDGDAPQRDEVCAAVAALKRAAEQFAATLGQLDCPVLHISGESHLFSCYDLGESVLAFYSHMGSENLRSFNTHDADVRLRDLLADIKLLLTGAVL 897
            + G+ P+ D++   +A+LK+AAEQF +TL    CP+LHI G + +FSCY+ G+++LAFYS++  +    ++T DAD R+  ++++++LL    ++
Sbjct:   77 IKGNNPRVDDLVLPIASLKKAAEQFGSTLNAAKCPILHIRGNNVMFSCYEFGDNLLAFYSNLNGKETE-YDTTDADTRMSIIISELRLLFQNLIV 170
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BLAST of mRNA_H-canaliculatus_F_contig1314.2589.1 vs. uniprot
Match: A0A835ZF51_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF51_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.320e-12
Identity = 47/130 (36.15%), Postives = 78/130 (60.00%), Query Frame = 1 
Query:  589 HGTRSGFFVDGD---APQRDEVCAAVAALKRAAEQFAATLGQLDCPVLHISGESHLFSCYDLGES---------VLAFYS-HMGSENLRSFNTHDADVRLRDLLADIKLLLTGAVLLSPGSNNSPPVAAS 939
            H   +G F   D   AP  D+ C AV++L  AA QFA TL Q+ C V+HI+G+ HLFSCY++ +          +LAFY+  +    + + +T DAD  ++ ++A ++ +L G  +++P +N+SPP++ S
Sbjct:   60 HPLVTGSFTSDDVLDAPP-DKFCTAVSSLHNAAVQFARTLDQMGCSVMHIAGDQHLFSCYEVVDKSQPGLVNPWILAFYTTSVDGVPVSAIDTRDADEGVKKIVAALESMLAG--VMTPPANSSPPISTS 186
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BLAST of mRNA_H-canaliculatus_F_contig1314.2589.1 vs. uniprot
Match: L8H113_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H113_ACACA)

HSP 1 Score: 65.9 bits (159), Expect = 3.350e-9
Identity = 36/117 (30.77%), Postives = 66/117 (56.41%), Query Frame = 1 
Query:  568 SPMCRYVHGTRSGFFVDGD---APQRDEVCAAVAALKRAAEQFAATLGQLDCPVLHISGESHLFSCYDLGESVLAFYSHMG-SENLRSFNTHDADVRLRDLLADIKLLLTGAVLLSP 906
            +P C  V+      +  G+   A  ++++C  +  LKRAA +FA T G+ +C +L + G   +FSCY +GE+ +AF++ +   E + S  T   ++R++ L  ++KL+L  A +  P
Sbjct:   34 TPSCAIVNAQGELLYAFGEEASAGIQEDICLTLQKLKRAAVKFAETQGEHECSLLRVKGTKQIFSCYQIGENFMAFFTPLPVDEEVESVQT---ELRMQALCEELKLMLLDANIAKP 147
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BLAST of mRNA_H-canaliculatus_F_contig1314.2589.1 vs. uniprot
Match: A0A1V9Y5W5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5W5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.430e-9
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:  637 DEVCAAVAALKRAAEQFAATLGQLDCPVLHISGESHLFSCYDLGESVLAFYSHMGSENLRSFNTHDADVRLRDLLADIKLLLT 885
            DE+   +  L+++   FA+TL   +  V+HI GESH+FSCY L   VLAFYS M S ++  F+  +AD +L  +  +++ + T
Sbjct:   63 DELAGVITTLRQSVALFASTLNHAETQVVHIKGESHIFSCYSLDAHVLAFYSVMPSVDVALFDCSEADRKLEGICIELQRIAT 145
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BLAST of mRNA_H-canaliculatus_F_contig1314.2589.1 vs. uniprot
Match: A0A8K1C6G3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6G3_PYTOL)

HSP 1 Score: 61.6 bits (148), Expect = 1.240e-7
Identity = 28/68 (41.18%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:  637 DEVCAAVAALKRAAEQFAATLGQLDCPVLHISGESHLFSCYDLGESVLAFYSHMGSENLRSFNTHDAD 840
            +E+   +  LKRAA+QFA TL Q++  V+H+ G+  +FSC+    ++LAFY+ M   NL  F+ ++AD
Sbjct:   61 EELARTIVTLKRAAQQFATTLTQVESQVVHVKGDDRMFSCFGGEGTILAFYTQMPGVNLELFDCNEAD 128
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BLAST of mRNA_H-canaliculatus_F_contig1314.2589.1 vs. uniprot
Match: A0A7S0RKJ8_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RKJ8_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 5.530e-5
Identity = 28/77 (36.36%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:  664 LKRAAEQFAATLG-QLDCPVLHISGESHLFSCYDLGESVLAFYSHMGSENLRSFNTHDADVRLRDLLADIKLLLTGA 891
            LKRA  +F   +G Q  CP++H+ G  H+ SCYD+GE++LA  S +    ++ ++T  A+  +   L  +K LL  A
Sbjct:   92 LKRALLEFGDAVGCQTPCPMVHVKGNDHVISCYDVGENILALVSKLPVITVQVYDTASAEEIIAPQLEQLKHLLVHA 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1314.2589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A0G4IJA9_PLABS2.950e-1646.07Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A0H5QGE2_9EUKA9.520e-1537.89Uncharacterized protein (Fragment) n=2 Tax=Spongos... [more]
A0A835ZF51_9STRA6.320e-1236.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L8H113_ACACA3.350e-930.77Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A1V9Y5W5_9STRA3.430e-938.55Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A8K1C6G3_PYTOL1.240e-741.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S0RKJ8_9CHLO5.530e-536.36Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1314contigH-canaliculatus_F_contig1314:18433..21065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue7.3e-09
Seed eggNOG ortholog112098.XP_008610911.1
EggNOG OGs2CYH3@1,2S4D0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1529
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1314.2589.1prot_H-canaliculatus_F_contig1314.2589.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1314 19002..20492 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.321307-UTR-H-canaliculatus_F_contig1314:18432..190011622929052.321307-UTR-H-canaliculatus_F_contig1314:18432..19001Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1314 18433..19001 -
1696845661.2952514-UTR-H-canaliculatus_F_contig1314:18432..190011696845661.2952514-UTR-H-canaliculatus_F_contig1314:18432..19001Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1314 18433..19001 -
1622929052.375872-UTR-H-canaliculatus_F_contig1314:20492..210651622929052.375872-UTR-H-canaliculatus_F_contig1314:20492..21065Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1314 20493..21065 -
1696845661.3342395-UTR-H-canaliculatus_F_contig1314:20492..210651696845661.3342395-UTR-H-canaliculatus_F_contig1314:20492..21065Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1314 20493..21065 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.3334587-CDS-H-canaliculatus_F_contig1314:19001..191871622929052.3334587-CDS-H-canaliculatus_F_contig1314:19001..19187Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1314 19002..19187 -
1696845661.3058503-CDS-H-canaliculatus_F_contig1314:19001..191871696845661.3058503-CDS-H-canaliculatus_F_contig1314:19001..19187Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1314 19002..19187 -
1622929052.3488674-CDS-H-canaliculatus_F_contig1314:19787..198731622929052.3488674-CDS-H-canaliculatus_F_contig1314:19787..19873Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1314 19788..19873 -
1696845661.3143446-CDS-H-canaliculatus_F_contig1314:19787..198731696845661.3143446-CDS-H-canaliculatus_F_contig1314:19787..19873Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1314 19788..19873 -
1622929052.3620238-CDS-H-canaliculatus_F_contig1314:20377..204921622929052.3620238-CDS-H-canaliculatus_F_contig1314:20377..20492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1314 20378..20492 -
1696845661.3258078-CDS-H-canaliculatus_F_contig1314:20377..204921696845661.3258078-CDS-H-canaliculatus_F_contig1314:20377..20492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1314 20378..20492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1314.2589.1

>prot_H-canaliculatus_F_contig1314.2589.1 ID=prot_H-canaliculatus_F_contig1314.2589.1|Name=mRNA_H-canaliculatus_F_contig1314.2589.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=129bp
MCRYVHGTRSGFFVDGDAPQRDEVCAAVAALKRAAEQFAATLGQLDCPVL
HISGESHLFSCYDLGESVLAFYSHMGSENLRSFNTHDADVRLRDLLADIK
LLLTGAVLLSPGSNNSPPVAASDRRSMV*
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mRNA from alignment at H-canaliculatus_F_contig1314:18433..21065-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1314.2589.1 ID=mRNA_H-canaliculatus_F_contig1314.2589.1|Name=mRNA_H-canaliculatus_F_contig1314.2589.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2633bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1314:18433..21065- (Hapterophycus canaliculatus Oshoro5f female)
CCAGCAGATAGGGAGTAAACAGGTCAAAATACTGAGGTGATGAGCTGGTG
CTGTCGCAAGCGATCGGGCATGGGCCCGAGCCTCCAGGATCAGCTGAGGG
AAAAGCTCAGCGGCGTTGAGCTGTGCTATCCTGGAACAAACTACGCTTGC
TTGCTAGACCTGGAAGGGAAGTTTCTGTGAGTGTCTTATCTGGTCAACCC
AGCCTCCATTGTACCGGGGGTACATGTTACGACGCAAGACAGCAGTGGCA
TTCCTGCTGAAAGAGGTTGCTACACTTCGGTCACACCTCATAACTCACAA
AACTTTGATCTTGTGTTACAAAAATGGATGCCCTCAAGCGAGATACTCTG
GTTGTGGTTCGCCTGGTGCCAAATCTCGACGGCGGCGCAGTTTTGTTTTG
TATGATGTTGAGGAGATACTGTATGAAGTTCGTTTTGTATGATGTTGAGT
TCCAATTCTCGTGTATGAATGTACAAGTACCTCGATTACCTCAATGAAAA
CTTCAGCTCTCATCCTGCGTTATCATAGTTTGCAGAATTATGAAGTAACG
AGAAATAATGCACTCCGTCCCCTATGTGTCGATATGTCCACGGGACAAGG
TCTGGGTTTTTTGTCGATGGAGACGCACCTCAGCGCGATGAGGTCTGCGC
AGCTGTTGCAGCTCTGAAGAGGGCAGCAGAACAGTTCGGTGAGTAACGAG
TAACAATCGCGGTGGCGATGGTGCGGAGGTTGTCCTTGTGAGAGGTCGAC
TGCGGCACAACTGATGAAGCCTAGTGATACCTTCGGTTGCTGCACAGTCT
ACCGGGTGCGACATTGAGGATCAGGGTGAGGGTTTTCATGTATTGCCTAG
CCTCGCCGGCCTGTGGTCTGAGGACGTCCAAACGGGCGTTCCTTAGAGAT
GTGCAAACTCCATGTGGTGAGGTAATTAGCGCAAGGGCAAACAGAGTCGT
GGTACAAAGGTGGGACGTGTGTTGGGACAAAAGTTGCAACTGCTGGTCGT
TCGGCAGACACTGCTAAACGAGGCGAGTGTGCCCTCCGCACGGTAAATGT
TATGGCAGCCTGACGAAACCCATCAGCTCCGTGACCAAAACTGCTGTCAT
GCGCCTTTCAAGCGTCAAATACGTCACCATACCGTCTCCATCGTCTCCTT
TCTTCCATCATGTTGATTGGCTGATAAAATCGTCTGTCGCAGCTGCAACC
CTCGGCCAACTGGATTGCCCTGTTCTTCATATCTCCGGGGAAAGTCACCT
TTTTTCTTGCTACGACCTCGGAGAAAGTGTGAGTTACAAAAATTGTGGCC
CCTTTGAGGCCTCGAGACTGCACTGCAGGGTATCAGGGTTAAGGTTACCT
CTTGTTCCTCTAATAATAGTGTAGCTTCACTCCAACGCAGCCCTCGAAGG
AACTCGCGTGGGGCACAACGTCTCACATTCGTCCCACGGAGCGAAAGCGG
AAGTGCGACCCCCGAGATGTGATCCCGAGGTTGAAGCTTACAAAATTTCA
CTGTGTGTAGCGGTCCCGACATTTCGTAAGACTAGTGTCATACGTCCAAG
TAGAGGGGATGAGATGAATGGAGACCTCATGGGGAAGGTAAGCGGGTGCC
TCTTGAGTTGAAAAATGAAAATCGGATTTCAAATCGTAGACACTTCTTGA
TATTCGAGTAATGACGATCACGGCATAACATTCACCATGAGGTGATAGTT
GACTTGGAGATGATGTACACGCTTACCCTTGCCGACTGTTGTTCTTGGGG
ACTCCGTGCTGGCACCTCGGGAATCAGCTCTGTGCGTCTGTTAATTCCAA
CATATCTATCTACCCCCCCGATGTTGCTCTCCGTTGATTCTCCCCATGTT
TGAACGCTTCATCGGGATGCGATGGCAGGTTTTAGCATTTTATTCTCATA
TGGGCAGCGAAAACCTGCGATCGTTCAACACGCACGATGCGGACGTTCGG
TTACGAGATCTCCTCGCAGATATCAAACTTTTATTGACGGGGGCTGTATT
ACTGTCACCAGGATCGAACAACTCTCCGCCGGTGGCGGCGAGTGACCGTC
GGAGCATGGTGTGAACGTTTGTGCGTTTGATCGCTCAAGGAGAATCGTGG
AAAATGTTCATGTTTGCCCCGTGATTGTGTTCGATCGGTGTGCCTTGGTC
CGCGTGAAACTTGAGGCGAAGAGGTTGAACGCTGGCACGCAGCTCGTGGG
TCCATCTAGTGTTGCCCTTCGAAAAGGCGTCATGCCGAATATCAACTTGT
GGTGCTCGAAGTGGGAAAGTGATCCGAATACTTGTATGTTTGCGGAAGAA
ATAAAAAGTAAAATGGTATTCCTTCGGTGGTGTTGTCTCTGTTTCCTAAA
ATATGTACAAATGTCACAGGGACAAGCTTTGAGGAATGACCATATGGAGA
TCTGCAAGGTTGTAGGTCGTCGGTTTGCGAACAAGAGAGAATCAAAGGAG
ATGTTCGATACAACATGGGGCTCATGCAAGGTGACACGGGTACTCCGATG
CGTATCCTTTCCTGTCGACCGCGACTAGATACGAAGTCTACCACACACTC
TGGTTTCAACTTGTCGGCCAAGCGATCAATCGAAAGTGTAGGAAAAAGCG
TTGTAAACAAGCCTTGCAGAAGGCTACTCGTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1314:18433..21065-

>mRNA_H-canaliculatus_F_contig1314.2589.1 ID=mRNA_H-canaliculatus_F_contig1314.2589.1|Name=mRNA_H-canaliculatus_F_contig1314.2589.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=774bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1314:18433..21065- (Hapterophycus canaliculatus Oshoro5f female)
ATGTGTCGATATGTCCACGGGACAAGGTCTGGGTTTTTTGTCGATGGAGA
CGCACCTCAGCGCGATGAGGTCTGCGCAGCTGTTGCAGCTCTGAAGAGGG
CAGCAGAACAGTTCGATGTGTCGATATGTCCACGGGACAAGGTCTGGGTT
TTTTGTCGATGGAGACGCACCTCAGCGCGATGAGGTCTGCGCAGCTGTTG
CAGCTCTGAAGAGGGCAGCAGAACAGTTCGCTGCAACCCTCGGCCAACTG
GATTGCCCTGTTCTTCATATCTCCGGGGAAAGTCACCTTTTTTCTTGCTA
CGACCTCGGAGAAAGTCTGCAACCCTCGGCCAACTGGATTGCCCTGTTCT
TCATATCTCCGGGGAAAGTCACCTTTTTTCTTGCTACGACCTCGGAGAAA
GTGTTTTAGCATTTTATTCTCATATGGGCAGCGAAAACCTGCGATCGTTC
AACACGCACGATGCGGACGTTCGGTTACGAGATCTCCTCGCAGATATCAA
ACTTTTATTGACGGGGGCTGTATTACTGTCACCAGGATCGAACAACTCTC
CGCCGGTGGCGGCGAGTGACCGTCGGAGCATGGTGTGAGTTTTAGCATTT
TATTCTCATATGGGCAGCGAAAACCTGCGATCGTTCAACACGCACGATGC
GGACGTTCGGTTACGAGATCTCCTCGCAGATATCAAACTTTTATTGACGG
GGGCTGTATTACTGTCACCAGGATCGAACAACTCTCCGCCGGTGGCGGCG
AGTGACCGTCGGAGCATGGTGTGA
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