mRNA_H-canaliculatus_F_contig13139.2587.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13139.2587.1
Unique NamemRNA_H-canaliculatus_F_contig13139.2587.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13139.2587.1 vs. uniprot
Match: D8LP32_ECTSI (Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP32_ECTSI)

HSP 1 Score: 486 bits (1251), Expect = 4.990e-164
Identity = 417/529 (78.83%), Postives = 449/529 (84.88%), Query Frame = 1
Query:   13 LSNYPLGDYNKLHRAVAEGCIKQILAGLGLGVDGINAPSKIEGETPLTIASARGDVRVTKLLLERGADTEGVTSTRQWTALFFSIPHPRATRILLKHGANHGAKDSTGSTPLHMAIRGEIGDAGLEVAEXXXXXXXXXXXXXXXXXXXXXLLAHKGRPAAGRVKAANVLVRSGANIDAVDSQGCTPLMRTCVYVTGLMPLXXXXXXXXXXXXXXXXXXSTSLHLLALGDRVCGAEVLDIXXXXXXXXXXXXXXXXXXXXXXXVASNFVGNPGLVKXXXXXXXXXXXXXXXXXXXXXXATIAGSFVTMSVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAKASALLPTSDGGAC-YPLEVAASMGHTDIVRELLQRVGIEGCGGPSGGARALALAAVVPSVGVMAILLETGVVDTGEALSNA-NECASMKLLVQHRLEDSDYLDRCSRPAESINKEMVQGEQADSDQLLILQAVQRLLLRSEAVTATSWLWPKGTDAAAPTIKTATAA-PALVAMMPLLRRRA 1590
            L+NYP GDYN+LHRAVAEG IK+ILA LGLGVD INAPSK +GETPLTIASA G  RVT LLL+RGADTE VT +R WTALFFSIP+P  TR+LL+ GAN+GAK   GSTPLH AIRGEIGDA LEVAEXXXXXXXXXXXXXXXXXXXX LLAHKGRPA GRV+AA +LV+  ANIDA+D +GCTPLM TCVYVTGL+ LXXXXXXXXXXXXXXXXXX   LHLLA GD+VCG E+L+ XXXXXXXXXXXXXXXXXXXXXXX AS FVGN GLV XXXXXXXXXXXXXXXXXXXXXXA  AGSF TMSV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AKASALLP+SDG A  YPLE+AA++GHTDIV EL+QRVG++GCGGPSGGA ALALAA    V VM ILL+TGVVDTGEALS + NE A MK LVQ RL DSDYLDR  R AESI      GEQA SDQL +++AVQRLLLR+EAVTA SW W  GTDAAAPT KT TAA PAL AMMPLLRRRA
Sbjct:   16 LTNYPSGDYNELHRAVAEGRIKKILARLGLGVDDINAPSKTKGETPLTIASAHGYDRVTTLLLDRGADTERVTPSRGWTALFFSIPYPDVTRVLLESGANNGAKSLCGSTPLHFAIRGEIGDACLEVAEXXXXXXXXXXXXXXXXXXXXHLLAHKGRPAKGRVEAAKLLVKFRANIDAMDIKGCTPLMNTCVYVTGLVALXXXXXXXXXXXXXXXXXXXXXLHLLASGDKVCGNELLEXXXXXXXXXXXXXXXXXXXXXXXXXASMFVGNIGLVXXXXXXXXXXXXXXXXXXXXXXXAGFAGSFCTMSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKASALLPSSDGDAIIYPLEIAAALGHTDIVGELVQRVGVDGCGGPSGGAHALALAAKDKRVDVMLILLKTGVVDTGEALSESVNEFACMKSLVQQRLGDSDYLDRYGRCAESIKGA---GEQATSDQLNMMRAVQRLLLRAEAVTAISWRWSTGTDAAAPTTKTTTAATPALTAMMPLLRRRA 541          
BLAST of mRNA_H-canaliculatus_F_contig13139.2587.1 vs. uniprot
Match: D7G317_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G317_ECTSI)

HSP 1 Score: 442 bits (1136), Expect = 1.230e-147
Identity = 389/530 (73.40%), Postives = 411/530 (77.55%), Query Frame = 1
Query:    1 MPTELSNYPLGDYNKLHRAVAEGCIKQILAGLGLGVDGINAPSKIEGETPLTIASARGDVRVTKLLLERGADTEGVTSTRQWTALFFSIPHPRATRILLKHGANHGAKDSTGSTPLHMAIRGEIGDAGLEVAEXXXXXXXXXXXXXXXXXXXXXLLAHKGRPAAGRVKAANVLVRSGANIDAVDSQGCTPLMRTCVYVTGLMPLXXXXXXXXXXXXXXXXXXSTSLHLLALGDRVCGAEVLDIXXXXXXXXXXXXXXXXXXXXXXXVASNFVGNPGLVKXXXXXXXXXXXXXXXXXXXXXXATIAGSFVTMSVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAKASALLPTSDGGACYPLEVAASMGHTDIVRELLQRVGIEGCGGPSGGARALALAAVVPSVGVMAILLETGVVDTGEALSNANECASMKLLVQHRLEDSDYLDRCSRPAESINKEMVQGEQADSDQLLILQAVQRLLLRSEAVTATSWLWPKGTDAAAPTIKTATAAPALVAMMPLLRRRA 1590
            MP  LSNYPLGDYN LHRAVAEG +K+ILA LGLGVD +NA SK++GET LT+ASARGD RVTKLL+ERGADTEGVT +RQ TALFFSIP+P  TRILL+ GANHGAKD TGSTPLH+AIRGEIGDAGLEVA XXXXXXXXXXXXXXXXXXXXXLL+HKGRPA GRV                       LM TCVYVTGL+P XXXXXXXXXXXXXX    STSLHLLA GD+VCGAE+LDIXXXXXXXXXXXXXXXXXXXXXXX+AS FV N GLVKXXXXXXXXXXXXXXXXXXXXXXATIAGSF+TMSV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AKASALLP S   A YPLEVAA+ GHTDIVRELLQR+GIEGCGGPS GA ALA AA  PSV VM ILLETGVV TGEALSNANEC                                             +A QRLLLR+ AVTATSWLWP+GT AA PTIKTA AAP L  MMPLLRRRA
Sbjct:    1 MPGGLSNYPLGDYNHLHRAVAEGSVKKILARLGLGVDDVNANSKVDGETALTMASARGDNRVTKLLVERGADTEGVTLSRQRTALFFSIPYPDVTRILLERGANHGAKDVTGSTPLHLAIRGEIGDAGLEVAXXXXXXXXXXXXXXXXXXXXXXLLSHKGRPAKGRVXXXXXXXXXXXXXXXXXXXXXXXLMFTCVYVTGLVPXXXXXXXXXXXXXXXNTFGSTSLHLLAAGDKVCGAELLDIXXXXXXXXXXXXXXXXXXXXXXXIASKFVDNLGLVKXXXXXXXXXXXXXXXXXXXXXXATIAGSFMTMSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKASALLPRSGPSAIYPLEVAAASGHTDIVRELLQRLGIEGCGGPSNGALALAFAASYPSVDVMTILLETGVVGTGEALSNANEC---------------------------------------------KAAQRLLLRAGAVTATSWLWPRGTHAATPTIKTAAAAPVLTVMMPLLRRRA 485          
BLAST of mRNA_H-canaliculatus_F_contig13139.2587.1 vs. uniprot
Match: A0A6H5JFP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFP0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.720e-22
Identity = 64/133 (48.12%), Postives = 84/133 (63.16%), Query Frame = 1
Query:    1 MPTELSNYPLGDYNKLHRAVAEGCIKQILAGLGLGVDGINAPSKIEGETPLTIASARGDVRVTKLLLERGADTEGVTSTRQWTALFFSIPHPRATRILLKHGANHGAKDSTGSTPLHMAIRGEIGDAGLEVAE 399
            MP E  NYP G Y+ LHRAVA G  +++   L  G+D IN  S    +TPL IA   G++ + +LLL+RGADTE  T+    TALF S+ +PR  RIL+  GANHGA+D+ G+TPL +A   + G AG  V E
Sbjct:    1 MPGEPPNYPRGPYSDLHRAVASGSTRRVSMQLDTGID-INIASDPAKDTPLIIACRHGELALVQLLLDRGADTER-TNQEGRTALFESLHYPRIARILIDRGANHGAQDNHGATPLLLAATRKSGCAGQAVTE 131          
BLAST of mRNA_H-canaliculatus_F_contig13139.2587.1 vs. uniprot
Match: A0A6H5JTV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.510e-16
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 1
Query: 1054 ASALLPTSD-----GGACYPLEVAASMGHTDIVRELLQRVGIEGCGGPSGGARALALAAVVPSVGVMAILLETGVVDTGEALSNANEC---ASMKLLVQHR 1332
            A+ALLP  D     G +  PLE AA  G+ DIV EL+Q  GIEGCGGPSGG  ALA AA    VG++A+LL+ GVVDTGE L+ AN+    A MK+L Q R
Sbjct:  112 ANALLPKIDPESRNGKSVLPLEDAAEHGNLDIVHELVQLFGIEGCGGPSGGVGALANAAEFGHVGIVALLLDAGVVDTGETLALANDSGNSAVMKILGQRR 212          
BLAST of mRNA_H-canaliculatus_F_contig13139.2587.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 4.440e-15
Identity = 74/213 (34.74%), Postives = 100/213 (46.95%), Query Frame = 1
Query: 1063 LLPTSDGG--ACYPLEVAASMGHTDIVRELLQRVGIEGCGGPSGGARALALAAVVPSVGVMAILLETGVVDTGEAL---SNANECASMKLLVQHRLEDSD------YLDR-----------CSR----------------------PAESIN---------------------KEMVQGEQADSDQLLILQAVQRLLLRSEAVTATSWLWPKG 1506
            L+ TS  G     PL++AA  GHTD+VREL+Q +GIEGC   S GA ALA AA    + +MAIL E GVVDTG+AL   +     AS+K L++HR ++        YL+            C++                      P + +N                     K +  G+ A  + L  L+A+ RLLLR +AV A SWLWP G
Sbjct:  268 LIQTSPPGNTTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSG 480          
BLAST of mRNA_H-canaliculatus_F_contig13139.2587.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 5.420e-14
Identity = 88/255 (34.51%), Postives = 111/255 (43.53%), Query Frame = 1
Query: 1045 RAKASALLPTSD-GGACYPLEVAASMGHTDIVRELLQRVGIEGCGGPSGGARALALAAVVPSVGVMAILLETGVVDTGEALSNANECASM---KLLVQHR----LEDSDYLDR----CSRPAESINKEM---------------------------------------------------VQGEQADSDQLLI-LQAVQRLLLRSEAVTATSWLW---------PKGTDAAAPTIKTATAAPALVAMMPLLRRRA 1590
            RAKA+ LL   +      PL+ AA  G   +V ELLQR GI GCGG +GG  AL LAA+ P + VM  L   GVVDTG AL  A     M   K L+Q +     E S Y+ R    C R     N ++                                                   +   +A  D+LL  L+ ++RLLLR EAV ATSWLW         P G  AA  T  ++T AP L  ++P+LRRRA
Sbjct:  168 RAKANPLLTRVNLAWQHLPLDTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLLQQQNGTPSEKSAYVSRPRDPCGRTPLICNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETESSSTTAPQLRTVLPILRRRA 422          
BLAST of mRNA_H-canaliculatus_F_contig13139.2587.1 vs. uniprot
Match: D7G1I8_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I8_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.240e-13
Identity = 66/157 (42.04%), Postives = 82/157 (52.23%), Query Frame = 1
Query: 1096 PLEVAASMGHTDIVRELLQRVGIEGCGGPSGGARALALAAVVPSVGVMAILLETGVVDTGEALSNA---NECASMKLLV-QHRLEDSD---YLDR-----------CSRPAESI-----NKEMVQGEQADSDQLLILQAVQRLLLRSEAVTATSWLW 1497
            PL+ AA  G + +VRE L ++GI+GCGGPS GA AL  AA    V  MA+L   GVVDTG AL  A   N   S+K L+ Q +L+ +    Y+D            CS   E +      +  V G     +Q   L AV RLLLR EAV A SWLW
Sbjct:  187 PLDAAAGKGRSLVVREFLDQLGIDGCGGPSRGAHALYHAAKEQFVDTMAVLANAGVVDTGIALIGAIKENREGSIKFLLRQQQLQGNPTGAYVDEARDPFGRTPLLCSIEDEGLVDHYLGENRVIGRDITEEQAHKLNAVHRLLLRVEAVHAASWLW 343          
BLAST of mRNA_H-canaliculatus_F_contig13139.2587.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.000e-12
Identity = 80/226 (35.40%), Postives = 103/226 (45.58%), Query Frame = 1
Query: 1048 AKASALLP-TSDGGA--CYPLEVAASMGHTDIVRELLQRVGIEGCGGPSGGARALALAAVVPSVGVMAILLETGVVDTGEALSNA----NECASMKLLVQHRLEDS-------------------DYLDRCSRP----------AESINKEMVQGEQADSDQLLI------------------------LQAVQRLLLRSEAVTATSWLWPKGTDAAAPTIKTATA 1545
            AKA  LL   SD G     PL+VAA  GH ++V EL+++VGI+GCGG SGG  AL  AA+   + +MAIL + GVVDTG AL  A     E     LL Q R   S                   D + RC RP          A++ +  ++  +  + D  +                         L+ ++RLLLR EAV A SWLWP  T    PTI  ATA
Sbjct:  170 AKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYGGEAPLKFLLEQARGRKSTDRAAYMNTLNGVGLTSLLDGIQRC-RPRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGGRSAKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDT----PTITHATA 390          
BLAST of mRNA_H-canaliculatus_F_contig13139.2587.1 vs. uniprot
Match: A0A6H5JMS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMS6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.560e-12
Identity = 60/170 (35.29%), Postives = 84/170 (49.41%), Query Frame = 1
Query: 1096 PLEVAASMGHTDIVRELLQRVGIEGCGGPSGGARALALAAVVPSVGVMAILLETGVVDTGEALSNA--NECASMKLLVQH------------------------------RLEDSDYLDRC-SRPAESINKEMVQG---EQADSDQLLILQAVQRLLLRSEAVTATSWLW 1497
            P +VA  +GH ++V EL+++VGI GCGG SGG RAL  AA    + ++ +L   GVVDTG AL  A     A +K L++                               R + + YL R  S P   +   +++    E    +QL  L+A++RLLLR EAV A SWLW
Sbjct:   69 PFDVAVDLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKPLDMLTVLTSAGVVDTGLALRAAAFGGVAPLKFLLEQARARKTMGGPADAAPELCGCLSKPERTRHPRFQSTAYLVRTTSHPCMGLTMLLLRDLGTEPLTEEQLNALEAIRRLLLRVEAVHAVSWLW 238          
BLAST of mRNA_H-canaliculatus_F_contig13139.2587.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.160e-12
Identity = 72/215 (33.49%), Postives = 94/215 (43.72%), Query Frame = 1
Query: 1048 AKASALL---PTSDGGACYPLEVAASMGHTDIVRELLQRVGIEGCGGPSGGARALALAAVVPSVGVMAILLETGVVDTGEALSNA----NECASMKLLVQHR----LEDSDYLDRCSR-----------------------------------------------------PAESINKEMVQGEQADSDQLLILQAVQRLLLRSEAVTATSWLWP 1500
            AKA  LL   P   G    PL+ AA  GH ++V EL+++VGI+GCGG SGG RAL  AA   ++ +M IL   GVVDTG AL  A     E     LL Q R    ++++ Y++   R                                                     P     K + +G  A  +QL  L+A++RLLLR EAV A SWLWP
Sbjct:  170 AKADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLLWGIQHYRPRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGP-ASPEQLHKLEAIRRLLLRVEAVHAVSWLWP 383          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13139.2587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LP32_ECTSI4.990e-16478.83Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus T... [more]
D7G317_ECTSI1.230e-14773.40Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JFP0_9PHAE2.720e-2248.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTV7_9PHAE3.510e-1655.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT11_ECTSI4.440e-1534.74EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FVK3_ECTSI5.420e-1434.51EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1I8_ECTSI2.240e-1342.04EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KQV0_9PHAE1.000e-1235.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMS6_9PHAE1.560e-1235.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJA9_9PHAE5.160e-1233.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13139contigH-canaliculatus_F_contig13139:598..2355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score491.5
Seed ortholog evalue4.9e-136
Seed eggNOG ortholog2880.D8LP32
Preferred nameANKRD65
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1590
Cds size1590
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.0609097-CDS-H-canaliculatus_F_contig13139:597..8011622929052.0609097-CDS-H-canaliculatus_F_contig13139:597..801Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13139 598..801 -
1696845661.195595-CDS-H-canaliculatus_F_contig13139:597..8011696845661.195595-CDS-H-canaliculatus_F_contig13139:597..801Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13139 598..801 -
1622929052.094908-CDS-H-canaliculatus_F_contig13139:969..23551622929052.094908-CDS-H-canaliculatus_F_contig13139:969..2355Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13139 970..2355 -
1696845661.2058856-CDS-H-canaliculatus_F_contig13139:969..23551696845661.2058856-CDS-H-canaliculatus_F_contig13139:969..2355Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13139 970..2355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13139.2587.1prot_H-canaliculatus_F_contig13139.2587.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13139 598..2355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13139.2587.1

>prot_H-canaliculatus_F_contig13139.2587.1 ID=prot_H-canaliculatus_F_contig13139.2587.1|Name=mRNA_H-canaliculatus_F_contig13139.2587.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=530bp
MPTELSNYPLGDYNKLHRAVAEGCIKQILAGLGLGVDGINAPSKIEGETP
LTIASARGDVRVTKLLLERGADTEGVTSTRQWTALFFSIPHPRATRILLK
HGANHGAKDSTGSTPLHMAIRGEIGDAGLEVAEILLEFGADANAKDNSEA
APLHLLAHKGRPAAGRVKAANVLVRSGANIDAVDSQGCTPLMRTCVYVTG
LMPLAKMLVREGANLDVSNTFGSTSLHLLALGDRVCGAEVLDIAMLLVEE
GANIGAMDRNGSTPLHVASNFVGNPGLVKLLVERGADPDAREITGETPLH
LATIAGSFVTMSVLIAGGANVNLRDRQGETPLFKAAERGHLVAVRMLLRA
KASALLPTSDGGACYPLEVAASMGHTDIVRELLQRVGIEGCGGPSGGARA
LALAAVVPSVGVMAILLETGVVDTGEALSNANECASMKLLVQHRLEDSDY
LDRCSRPAESINKEMVQGEQADSDQLLILQAVQRLLLRSEAVTATSWLWP
KGTDAAAPTIKTATAAPALVAMMPLLRRRA
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mRNA from alignment at H-canaliculatus_F_contig13139:598..2355-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13139.2587.1 ID=mRNA_H-canaliculatus_F_contig13139.2587.1|Name=mRNA_H-canaliculatus_F_contig13139.2587.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1758bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13139:598..2355- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTACAGAATTAAGCAATTATCCTCTTGGAGACTACAACAAACTACA CCGCGCTGTGGCGGAAGGATGCATCAAGCAGATCTTGGCGGGACTTGGTC TTGGGGTCGATGGCATCAATGCCCCAAGTAAAATTGAAGGGGAGACGCCA CTCACAATCGCGTCCGCACGAGGTGATGTCAGAGTCACCAAATTGCTTTT AGAACGTGGTGCCGACACAGAAGGCGTTACATCAACAAGGCAGTGGACGG CTCTGTTCTTTTCGATTCCACACCCGCGCGCAACGAGGATCCTGCTCAAG CATGGCGCAAACCACGGGGCAAAGGACTCCACTGGTTCCACACCGCTGCA CATGGCTATACGAGGCGAGATTGGTGACGCCGGTCTGGAGGTCGCGGAGA TTCTGCTCGAGTTTGGAGCAGATGCCAACGCCAAAGACAACAGTGAAGCT GCGCCACTCCACCTCCTAGCACACAAAGGTCGGCCGGCGGCGGGGCGTGT AAAAGCCGCAAATGTGCTGGTCAGGTCTGGTGCAAACATCGACGCCGTCG ACAGTCAAGGTTGTACACCACTGATGCGTACCTGCGTCTACGTAACTGGA CTCATGCCTTTGGCAAAGATGCTGGTTAGGGAAGGTGCAAACCTGGATGT ATCCAACACGTTTGGATCAACATCGCTCCATCTACTTGCCTTGGGTGATA GAGTATGCGGTGCCGAAGTGCTGGACATCGCGATGCTACTGGTCGAAGAA GGTGCAAACATCGGCGCGATGGACAGGAACGGATCCACCCCACTTCACGT CGCATCGAATTTTGTCGGCAACCCTGGGCTCGTCAAGTTGCTGGTAGAGC GCGGGGCCGACCCGGATGCAAGGGAAATCACCGGAGAGACACCGCTTCAC CTGGCTACTATCGCTGGAAGTTTTGTGACCATGTCAGTGCTCATCGCTGG CGGTGCGAACGTCAACCTCCGTGATCGGCAAGGGGAGACACCGCTGTTCA AGGCCGCTGAACGAGGACATCTGGTAGCGGTCAGGATGCTTCTTCGTGCG AAAGCCAGTGCTCTGTTGCCCACCTCGGATGGCGGTGCATGTTACCCGCT GGAAGTTGCGGCGTCAATGGGCCACACCGATATCGTGAGAGAACTGTTGC AACGCGTTGGAATCGAGGGTTGTGGTGGGCCGAGTGGTGGTGCACGCGCT CTCGCGCTTGCAGCAGTGGTACCATCCGTGGGTGTCATGGCTATTCTTCT CGAGACCGGCGTTGTCGATACAGGTGAAGCTCTGTCTAACGCCAACGAGT GTGCCTCCATGAAGTTGCTCGTTCAGCACCGCCTGGAAGACTCAGACTAC CTGGATCGATGTAGTCGTCCTGCTGAATCGATCAATGTGCTCCTCACTGA GTGTCCCATGTCACCGATGGCCCGCATCATTGCTACATGTAATCCTCAAG CTCCCGGTATGATACAGTTTCTCATTGCGGCCGGATCGAGCTTGGAATCT ATTCCTGGACGGGGTGAACGGATGATAAGCCTCGTGAACCGCATGCTGCT AAAGAAGGAAATGGTGCAGGGCGAACAAGCAGATTCGGACCAGCTACTTA TACTGCAGGCCGTCCAACGTTTGCTACTGCGGTCGGAGGCGGTGACGGCT ACTTCCTGGCTGTGGCCCAAGGGTACGGATGCTGCCGCCCCAACCATCAA AACTGCTACCGCTGCACCTGCCCTGGTTGCGATGATGCCTCTGCTGAGGC GGAGGGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13139:598..2355-

>mRNA_H-canaliculatus_F_contig13139.2587.1 ID=mRNA_H-canaliculatus_F_contig13139.2587.1|Name=mRNA_H-canaliculatus_F_contig13139.2587.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3180bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13139:598..2355- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTACAGAATTAAGCAATTATCCTCTTGGAGACTACAACAAACTACA
CCGCGCTGTGGCGGAAGGATGCATCAAGCAGATCTTGGCGGGACTTGGTC
TTGGGGTCGATGGCATCAATGCCCCAAGTAAAATTGAAGGGGAGACGCCA
CTCACAATCGCGTCCGCACGAGGTGATGTCAGAGTCACCAAATTGCTTTT
AGAACGTGGTGCCGACACAGAAGGCGTTACATCAACAAGGCAGTGGACGG
CTCTGTTCTTTTCGATTCCACACCCGCGCGCAACGAGGATCCTGCTCAAG
CATGGCGCAAACCACGGGGCAAAGGACTCCACTGGTTCCACACCGCTGCA
CATGGCTATACGAGGCGAGATTGGTGACGCCGGTCTGGAGGTCGCGGAGA
TTCTGCTCGAGTTTGGAGCAGATGCCAACGCCAAAGACAACAGTGAAGCT
GCGCCACTCCACCTCCTAGCACACAAAGGTCGGCCGGCGGCGGGGCGTGT
AAAAGCCGCAAATGTGCTGGTCAGGTCTGGTGCAAACATCGACGCCGTCG
ACAGTCAAGGTTGTACACCACTGATGCGTACCTGCGTCTACGTAACTGGA
CTCATGCCTTTGGCAAAGATGCTGGTTAGGGAAGGTGCAAACCTGGATGT
ATCCAACACGTTTGGATCAACATCGCTCCATCTACTTGCCTTGGGTGATA
GAGTATGCGGTGCCGAAGTGCTGGACATCGCGATGCTACTGGTCGAAGAA
GGTGCAAACATCGGCGCGATGGACAGGAACGGATCCACCCCACTTCACGT
CGCATCGAATTTTGTCGGCAACCCTGGGCTCGTCAAGTTGCTGGTAGAGC
GCGGGGCCGACCCGGATGCAAGGGAAATCACCGGAGAGACACCGCTTCAC
CTGGCTACTATCGCTGGAAGTTTTGTGACCATGTCAGTGCTCATCGCTGG
CGGTGCGAACGTCAACCTCCGTGATCGGCAAGGGGAGACACCGCTGTTCA
AGGCCGCTGAACGAGGACATCTGGTAGCGGTCAGGATGCTTCTTCGTGCG
AAAGCCAGTGCTCTGTTGCCCACCTCGGATGGCGGTGCATGTTACCCGCT
GGAAGTTGCGGCGTCAATGGGCCACACCGATATCGTGAGAGAACTGTTGC
AACGCGTTGGAATCGAGGGTTGTGGTGGGCCGAGTGGTGGTGCACGCGCT
CTCGCGCTTGCAGCAGTGGTACCATCCGTGGGTGTCATGGCTATTCTTCT
CGAGACCGGCGTTGTCGATACAGGTGAAGCTCTGTCTAACGCCAACGAGT
GTGCCTCCATGAAGTTGCTCGTTCAGCACCGCCTGGAAGACTCAGACTAC
CTGGATCGATGTAGTCGTCCTGCTGAATCGATCAATATGCCTACAGAATT
AAGCAATTATCCTCTTGGAGACTACAACAAACTACACCGCGCTGTGGCGG
AAGGATGCATCAAGCAGATCTTGGCGGGACTTGGTCTTGGGGTCGATGGC
ATCAATGCCCCAAGTAAAATTGAAGGGGAGACGCCACTCACAATCGCGTC
CGCACGAGGTGATGTCAGAGTCACCAAATTGCTTTTAGAACGTGGTGCCG
ACACAGAAGGCGTTACATCAACAAGGCAGTGGACGGCTCTGTTCTTTTCG
ATTCCACACCCGCGCGCAACGAGGATCCTGCTCAAGCATGGCGCAAACCA
CGGGGCAAAGGACTCCACTGGTTCCACACCGCTGCACATGGCTATACGAG
GCGAGATTGGTGACGCCGGTCTGGAGGTCGCGGAGATTCTGCTCGAGTTT
GGAGCAGATGCCAACGCCAAAGACAACAGTGAAGCTGCGCCACTCCACCT
CCTAGCACACAAAGGTCGGCCGGCGGCGGGGCGTGTAAAAGCCGCAAATG
TGCTGGTCAGGTCTGGTGCAAACATCGACGCCGTCGACAGTCAAGGTTGT
ACACCACTGATGCGTACCTGCGTCTACGTAACTGGACTCATGCCTTTGGC
AAAGATGCTGGTTAGGGAAGGTGCAAACCTGGATGTATCCAACACGTTTG
GATCAACATCGCTCCATCTACTTGCCTTGGGTGATAGAGTATGCGGTGCC
GAAGTGCTGGACATCGCGATGCTACTGGTCGAAGAAGGTGCAAACATCGG
CGCGATGGACAGGAACGGATCCACCCCACTTCACGTCGCATCGAATTTTG
TCGGCAACCCTGGGCTCGTCAAGTTGCTGGTAGAGCGCGGGGCCGACCCG
GATGCAAGGGAAATCACCGGAGAGACACCGCTTCACCTGGCTACTATCGC
TGGAAGTTTTGTGACCATGTCAGTGCTCATCGCTGGCGGTGCGAACGTCA
ACCTCCGTGATCGGCAAGGGGAGACACCGCTGTTCAAGGCCGCTGAACGA
GGACATCTGGTAGCGGTCAGGATGCTTCTTCGTGCGAAAGCCAGTGCTCT
GTTGCCCACCTCGGATGGCGGTGCATGTTACCCGCTGGAAGTTGCGGCGT
CAATGGGCCACACCGATATCGTGAGAGAACTGTTGCAACGCGTTGGAATC
GAGGGTTGTGGTGGGCCGAGTGGTGGTGCACGCGCTCTCGCGCTTGCAGC
AGTGGTACCATCCGTGGGTGTCATGGCTATTCTTCTCGAGACCGGCGTTG
TCGATACAGGTGAAGCTCTGTCTAACGCCAACGAGTGTGCCTCCATGAAG
TTGCTCGTTCAGCACCGCCTGGAAGACTCAGACTACCTGGATCGATGTAG
TCGTCCTGCTGAATCGATCAATAAGGAAATGGTGCAGGGCGAACAAGCAG
ATTCGGACCAGCTACTTATACTGCAGGCCGTCCAACGTTTGCTACTGCGG
TCGGAGGCGGTGACGGCTACTTCCTGGCTGTGGCCCAAGGGTACGGATGC
TGCCGCCCCAACCATCAAAACTGCTACCGCTGCACCTGCCCTGGTTGCGA
TGATGCCTCTGCTGAGGCGGAGGGCTAAGGAAATGGTGCAGGGCGAACAA
GCAGATTCGGACCAGCTACTTATACTGCAGGCCGTCCAACGTTTGCTACT
GCGGTCGGAGGCGGTGACGGCTACTTCCTGGCTGTGGCCCAAGGGTACGG
ATGCTGCCGCCCCAACCATCAAAACTGCTACCGCTGCACCTGCCCTGGTT
GCGATGATGCCTCTGCTGAGGCGGAGGGCT
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