mRNA_H-canaliculatus_F_contig1312.2579.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1312.2579.1
Unique NamemRNA_H-canaliculatus_F_contig1312.2579.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1312.2579.1 vs. uniprot
Match: D8LJ70_ECTSI (Similar to chromatin modifying protein 2B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ70_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 8.260e-97
Identity = 175/191 (91.62%), Postives = 185/191 (96.86%), Query Frame = 1 
Query:  697 RDLDRELRNLDRSEKSLVAEIKKTAKGGNEGATRTLAKQLVQLRGQKDQLYAARARIAGVGNAAASAATTASLAGVMGNVAGVMKKVNDSVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVNQVLAELGLEMDGKMVDAPTNTPASGVARPSATAEDAKLDAKTEELLAQLGAL 1269
            RDLD+E+RNLDRSEKSLVAEIKKTAKGGN+GATRTLAKQLVQLR QKDQLY+ARA++AGVGNAA +AAT+ASLAGVMGNVAGVMKKVN++VSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVV QVLAELGLEMDGKMVDAPTNTPA GVARPS  AEDAKLDAKTEELLAQLGAL
Sbjct:   25 RDLDKEIRNLDRSEKSLVAEIKKTAKGGNQGATRTLAKQLVQLRAQKDQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNTPA-GVARPS-EAEDAKLDAKTEELLAQLGAL 213
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1312.2579.1 vs. uniprot
Match: A0A835YLS1_9STRA (Chromatin modifying protein-like protein 2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS1_9STRA)

HSP 1 Score: 178 bits (452), Expect = 9.410e-48
Identity = 106/192 (55.21%), Postives = 135/192 (70.31%), Query Frame = 1 
Query:  697 RDLDRELRNLDRSEKSLVAEIKKTA-KGGNEGATRTLAKQLVQLRGQKDQLYAARARIAGVGNAAASAATTASLAGVMGNVAGVMKKVNDSVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVNQVLAELGLEMDGKMVDAPTNTPASGVARPSATAEDAKLDAKTEELLAQLGAL 1269
            RD++RELRNLDR EK L+ +IKKTA K G E ATR LA QLV LR Q+D+LY  ++ I  VG    + A  A++AGVMG+V G MK VN  +S +E A ++QQFA+++E M M EE+MDDAL DAFDG+GVE E D +V+QVL E+GL+M  KM DAPT  PA+G        +D+ LD + EELL QL AL
Sbjct:   24 RDVERELRNLDRVEKQLIIDIKKTARKPGGEKATRNLAGQLVGLRKQRDKLYTMKSTITAVGYQTTAIAGQAAMAGVMGSVTGAMKDVNAQLSPQEMAAVLQQFALQSETMGMREELMDDALTDAFDGDGVEAETDAIVDQVLTEIGLDMTSKMADAPTGKPAAGQ---QLAQDDSMLDQRAEELLKQLQAL 212
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1312.2579.1 vs. uniprot
Match: A0A4D9D707_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D707_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.610e-35
Identity = 80/169 (47.34%), Postives = 112/169 (66.27%), Query Frame = 1 
Query:  697 RDLDRELRNLDRSEKSLVAEIKKTAKGGNEGATRTLAKQLVQLRGQKDQLYAARARIAGVGNAAASAATTASLAGVMGNVAGVMKKVNDSVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVNQVLAELGLEMDGKMVDAPTNTPASGVARPS 1203
            RD+DREL+NL R E  L+ +IKK A     G  + +AK LVQLR QKD+L   +  + GVG  A+   + A++   MG + GVM  +N+ +   +T+K+M +FA +NE MN+ E+++DDAL+DAFDG+GVEEEA+ VVNQVL E+GLE+  KM D P      GV + S
Sbjct:   25 RDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKTTMTGVGYKASLMHSQAAVGQAMGRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDAFDGDGVEEEAESVVNQVLEEIGLELGSKMADVPVGKLRDGVDKES 193
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BLAST of mRNA_H-canaliculatus_F_contig1312.2579.1 vs. uniprot
Match: A0A1E7EY94_9STRA (Snf7-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EY94_9STRA)

HSP 1 Score: 140 bits (352), Expect = 7.090e-34
Identity = 88/190 (46.32%), Postives = 123/190 (64.74%), Query Frame = 1 
Query:  715 LRNLDRSEKSLVAEIKKTAK---GGNEGATRTLAKQLVQLRGQKDQLYAARARIAGVGNAAASAATTASLAGVMGNVAGVMKKVNDSVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVNQVLAELGLEMDGKMVD--APTNTPASGVARPSATAEDAKLDAKTEELLAQLGAL 1269
            LR LDR E  +  E+K+ AK      + A   LAKQLVQ+R Q++++  A+A I  VG  A + AT  + A  +GNV+  MK  N++++ +ET KI+ +F  ENEK+ + +EMMDDAL+DAFD E VEEEA+ + NQVLAELG+EMD KMV   AP+   +S   +  +T E A LDA   +L ++L AL
Sbjct:   42 LRELDRQESQITKELKQRAKLTSSSKDPALAALAKQLVQIRKQREKIMTAKAHIGAVGMNATAMATQVAAASAIGNVSKAMKITNEAMNVQETTKILHEFQRENEKLEVKQEMMDDALMDAFDSEDVEEEAEELTNQVLAELGVEMDSKMVGLTAPSKIVSSSAEQNMSTEEQAALDAMLPDLKSRLDAL 231
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BLAST of mRNA_H-canaliculatus_F_contig1312.2579.1 vs. uniprot
Match: A0A7S2EVL5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVL5_TRICV)

HSP 1 Score: 137 bits (346), Expect = 3.640e-33
Identity = 92/197 (46.70%), Postives = 124/197 (62.94%), Query Frame = 1 
Query:  697 RDLDRELRNLDRSEKSLVAEIKKTAKG----GNEGATRTLAKQLVQLRGQKDQLYAARARIAGVGNAAASAATTASLAGVMGNVAGVMKKVNDSVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVNQVLAELGLEMDGKMV--DAPTNTPASGVARPSATAEDAKLDAKTEELLAQLGAL 1269
            RD+DRE+R LDR+E  ++AEIKK AK     GN+ A   LAKQLVQ+R QK+++++ +A +  VG  A + A+  + A  +GNV   M   N S+      KIM +F  +NE M + EE+MDDAL DAFD + VEEEA+ V NQVLAELG+E+D KMV  DAP   P       +A  ++A  DA   +L A+L AL
Sbjct:   30 RDMDREIRELDRTEAQVLAEIKKRAKAPGVSGNDRALSALAKQLVQIRKQKEKMFSTKANLGAVGMQATAMASQVAAASAVGNVTKAMGTANASIDAAAVGKIMTEFQRQNEIMGVREELMDDALTDAFDADEVEEEAEAVTNQVLAELGVELDSKMVGLDAPKQKPVGE--EMNAEEKEALYDA-LPDLRARLDAL 223
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1312.2579.1 vs. uniprot
Match: A0A1Z5KR86_FISSO (Charged multivesicular body protein 2B n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR86_FISSO)

HSP 1 Score: 135 bits (340), Expect = 1.920e-32
Identity = 86/193 (44.56%), Postives = 123/193 (63.73%), Query Frame = 1 
Query:  700 DLDRELRNLDRSEKSLVAEIK---KTAKGGNEGATRTLAKQLVQLRGQKDQLYAARARIAGVGNAAASAATTASLAGVMGNVAGVMKKVNDSVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVNQVLAELGLEMDGKMVDAPTNTPASGVARPSATAEDAKLDAKTEELLAQLGAL 1269
            DLDRE+R LDR EK++  E+K   KTA   N+   + LAKQ+VQ+R Q+++L+ A+A++  +G  A  AA+  +    MG++   MK  N  +  ++T KIM +F  ENE++ + EEMMDD L+DAFD EG+EEEAD + NQVLAELG+E+D +MV    N PA  +       E+  LD    +L A+L AL
Sbjct:   30 DLDREIRELDRQEKTITVELKQRAKTASSANDPTLKALAKQMVQVRQQRNKLHTAKAQVGAMGMHATVAASQIAAVTAMGSITESMKVANKQMDIKKTTKIMAEFQRENERIQVKEEMMDDVLMDAFDSEGMEEEADQLTNQVLAELGVELDQQMVG--LNAPAKKLQ----AEEEEVLDEVLPDLKARLDAL 216
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1312.2579.1 vs. uniprot
Match: A0A7S2VFB0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VFB0_9STRA)

HSP 1 Score: 134 bits (338), Expect = 3.980e-32
Identity = 85/192 (44.27%), Postives = 120/192 (62.50%), Query Frame = 1 
Query:  703 LDRELRNLDRSEKSLVAEIKKTAKGGNEGAT---RTLAKQLVQLRGQKDQLYAARARIAGVGNAAASAATTASLAGVMGNVAGVMKKVNDSVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVNQVLAELGLEMDGKMVDAPTNTPASGVARPSATAEDAKLDAKTEELLAQLGAL 1269
            +DRE+R LDR EK +  E+K+ AKG N  +    +TLAKQLVQ+R Q+ +L  A+A++  +G  A   A+  +    +G+V   MK  N  ++ +ET KIM +F  ENE++ +  EMMDD L+DAFD EG+EEEAD V NQVLAELG+EMD +MV    + P + V      AE   ++    +L A+L AL
Sbjct:   31 MDREIRELDRQEKQITMELKQRAKGANSSSDPTLKTLAKQLVQVRQQRSKLVGAKAQLGAMGMHAQVTASQVAAVQAVGSVTDAMKVANKQLNVKETTKIMTEFQRENERLAVKSEMMDDVLMDAFDSEGMEEEADQVTNQVLAELGVEMDQQMVG--LDAPKTKVGAEEVPAETDPIEDALPDLRARLNAL 220
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BLAST of mRNA_H-canaliculatus_F_contig1312.2579.1 vs. uniprot
Match: A0A8J9X4Z5_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X4Z5_PHATR)

HSP 1 Score: 120 bits (300), Expect = 5.610e-28
Identity = 70/143 (48.95%), Postives = 98/143 (68.53%), Query Frame = 1 
Query:  736 EKSLVAEIKKTAK---GGNEGATRTLAKQLVQLRGQKDQLYAARARIAGVGNAAASAATTASLAGVMGNVAGVMKKVNDSVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVNQVLAELGLEMDGKM 1155
            EK+L+ EIK+ AK   G N+   +TLAKQLVQ+R Q+ +L++A+A++  +G  A   A+  +    +G+V   MK  N  ++ +ET KIM QF  E E + + EEMMDD L+DAFD EG+EEEAD V NQVLAELG+E+D +M
Sbjct:    1 EKTLMMEIKQRAKQASGSNDSTLKTLAKQLVQVRQQRVKLHSAKAQLGAMGMHATVTASQIAAVSAIGSVTDSMKVANQQMNIKETTKIMAQFQKETESLKVKEEMMDDVLMDAFDSEGIEEEADQVTNQVLAELGIELDSQM 143
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BLAST of mRNA_H-canaliculatus_F_contig1312.2579.1 vs. uniprot
Match: A0A4U5U084_COLLU (Charged multivesicular body protein 2b n=1 Tax=Collichthys lucidus TaxID=240159 RepID=A0A4U5U084_COLLU)

HSP 1 Score: 122 bits (306), Expect = 6.240e-28
Identity = 72/157 (45.86%), Postives = 99/157 (63.06%), Query Frame = 1 
Query:  697 RDLDRELRNLDRSEKSLVAEIKKTAKGGNEGATRTLAKQLVQLRGQKDQLYAARARIAGVGNAAASAATTASLAGVMGNVAGVMKKVNDSVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVNQVLAELGLEMDGKMVDAP 1167
            R + R+   L++ EK + AEIKK AK GN+ A + LAKQLVQLR QK++ YA  +++  +        +   +AG M   A  M+ VN  +  ++T K MQ F  EN KM M+EEM++D L D FD  G EEE+ G+VNQVL E+G+E+ GKMV AP
Sbjct:   26 RQITRDRAALEKQEKQMEAEIKKMAKSGNKEACKILAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLKTMQDFQKENMKMGMTEEMINDTLDDIFDESGDEEESQGIVNQVLDEIGIEISGKMVRAP 182
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1312.2579.1 vs. uniprot
Match: A0A3P8XA75_ESOLU (Charged multivesicular body protein 2b n=2 Tax=Esox lucius TaxID=8010 RepID=A0A3P8XA75_ESOLU)

HSP 1 Score: 122 bits (305), Expect = 9.200e-28
Identity = 79/191 (41.36%), Postives = 111/191 (58.12%), Query Frame = 1 
Query:  697 RDLDRELRNLDRSEKSLVAEIKKTAKGGNEGATRTLAKQLVQLRGQKDQLYAARARIAGVGNAAASAATTASLAGVMGNVAGVMKKVNDSVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVNQVLAELGLEMDGKMVDAPTNTPASGVARPSATAEDAKLDAKTEELLAQLGAL 1269
            R + R+   L++ EK L  EIKK AK GN+ A   LAKQLVQLR QK++ YA  +++  +            +AG MG     M+ VN  +  ++  + MQ F  EN KM M+EEMM+D L + FDG G EEE+D +VNQVL E+G+E+ GKMV+AP+    +    PSA+   +      E++  QL AL
Sbjct:   26 RQITRDRAALEKQEKQLEMEIKKMAKTGNKEACTILAKQLVQLRRQKNRTYAVSSKVTSMSTQTKLXXXXXXMAGAMGATTKTMQAVNKKMDPQKMQQTMQNFQKENMKMEMTEEMMNDTLDEIFDGSGDEEESDSIVNQVLDEIGIEISGKMVNAPS----ASRNHPSASTSKSDTGISDEDIERQLKAL 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1312.2579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ70_ECTSI8.260e-9791.62Similar to chromatin modifying protein 2B n=2 Tax=... [more]
A0A835YLS1_9STRA9.410e-4855.21Chromatin modifying protein-like protein 2B n=1 Ta... [more]
A0A4D9D707_9STRA4.610e-3547.34Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1E7EY94_9STRA7.090e-3446.32Snf7-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A7S2EVL5_TRICV3.640e-3346.70Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1Z5KR86_FISSO1.920e-3244.56Charged multivesicular body protein 2B n=2 Tax=Fis... [more]
A0A7S2VFB0_9STRA3.980e-3244.27Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A8J9X4Z5_PHATR5.610e-2848.95Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A4U5U084_COLLU6.240e-2845.86Charged multivesicular body protein 2b n=1 Tax=Col... [more]
A0A3P8XA75_ESOLU9.200e-2841.36Charged multivesicular body protein 2b n=2 Tax=Eso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1312contigH-canaliculatus_F_contig1312:23771..28058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.4
Seed ortholog evalue1.7e-82
Seed eggNOG ortholog2880.D8LJ70
Preferred nameCHMP2B
KEGG koko:K12192
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000815,GO:0000819,GO:0000920,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0006810,GO:0006914,GO:0006996,GO:0006997,GO:0007032,GO:0007034,GO:0007041,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019058,GO:0019068,GO:0019725,GO:0019904,GO:0022402,GO:0022411,GO:0022607,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032509,GO:0032510,GO:0032886,GO:0032984,GO:0032991,GO:0033043,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040012,GO:0040017,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044248,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0046605,GO:0046755,GO:0046907,GO:0048284,GO:0048285,GO:0048518,GO:0048524,GO:0050000,GO:0050789,GO:0050792,GO:0050794,GO:0050877,GO:0050890,GO:0051128,GO:0051179,GO:0051234,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0060236,GO:0060249,GO:0061024,GO:0061025,GO:0061763,GO:0061919,GO:0065007,GO:0065008,GO:0070050,GO:0070507,GO:0070925,GO:0071840,GO:0071985,GO:0090169,GO:0090174,GO:0090224,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0140014,GO:1901673,GO:1902115,GO:1902186,GO:1902188,GO:1903047,GO:1903900,GO:1903902,GO:1904896,GO:1904903
EggNOG free text desc.vacuolar transport
EggNOG OGsCOG5491@1,KOG3231@2759
COG Functional cat.N
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSnf7 family protein
Ec32 orthologEc-02_004980.1
Exons5
Model size2478
Cds size669
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929050.3044257-UTR-H-canaliculatus_F_contig1312:23770..243731622929050.3044257-UTR-H-canaliculatus_F_contig1312:23770..24373Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1312 23771..24373 +
1696845660.657008-UTR-H-canaliculatus_F_contig1312:23770..243731696845660.657008-UTR-H-canaliculatus_F_contig1312:23770..24373Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1312 23771..24373 +
1622929050.4274623-UTR-H-canaliculatus_F_contig1312:26852..280581622929050.4274623-UTR-H-canaliculatus_F_contig1312:26852..28058Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1312 26853..28058 +
1696845660.723305-UTR-H-canaliculatus_F_contig1312:26852..280581696845660.723305-UTR-H-canaliculatus_F_contig1312:26852..28058Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1312 26853..28058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929050.3330135-CDS-H-canaliculatus_F_contig1312:24373..244661622929050.3330135-CDS-H-canaliculatus_F_contig1312:24373..24466Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1312 24374..24466 +
1696845660.6684973-CDS-H-canaliculatus_F_contig1312:24373..244661696845660.6684973-CDS-H-canaliculatus_F_contig1312:24373..24466Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1312 24374..24466 +
1622929050.3475769-CDS-H-canaliculatus_F_contig1312:24597..246871622929050.3475769-CDS-H-canaliculatus_F_contig1312:24597..24687Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1312 24598..24687 +
1696845660.6804116-CDS-H-canaliculatus_F_contig1312:24597..246871696845660.6804116-CDS-H-canaliculatus_F_contig1312:24597..24687Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1312 24598..24687 +
1622929050.3707147-CDS-H-canaliculatus_F_contig1312:25240..253611622929050.3707147-CDS-H-canaliculatus_F_contig1312:25240..25361Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1312 25241..25361 +
1696845660.6914852-CDS-H-canaliculatus_F_contig1312:25240..253611696845660.6914852-CDS-H-canaliculatus_F_contig1312:25240..25361Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1312 25241..25361 +
1622929050.3823588-CDS-H-canaliculatus_F_contig1312:25696..258571622929050.3823588-CDS-H-canaliculatus_F_contig1312:25696..25857Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1312 25697..25857 +
1696845660.7024753-CDS-H-canaliculatus_F_contig1312:25696..258571696845660.7024753-CDS-H-canaliculatus_F_contig1312:25696..25857Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1312 25697..25857 +
1622929050.3970444-CDS-H-canaliculatus_F_contig1312:26648..268521622929050.3970444-CDS-H-canaliculatus_F_contig1312:26648..26852Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1312 26649..26852 +
1696845660.712481-CDS-H-canaliculatus_F_contig1312:26648..268521696845660.712481-CDS-H-canaliculatus_F_contig1312:26648..26852Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1312 26649..26852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1312.2579.1prot_H-canaliculatus_F_contig1312.2579.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1312 24374..26852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1312.2579.1

>prot_H-canaliculatus_F_contig1312.2579.1 ID=prot_H-canaliculatus_F_contig1312.2579.1|Name=mRNA_H-canaliculatus_F_contig1312.2579.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=223bp
MESTYRRIKRVFVAQQDSANFLFFGLRKKFCRDLDRELRNLDRSEKSLVA
EIKKTAKGGNEGATRTLAKQLVQLRGQKDQLYAARARIAGVGNAAASAAT
TASLAGVMGNVAGVMKKVNDSVSTEETAKIMQQFAVENEKMNMSEEMMDD
ALIDAFDGEGVEEEADGVVNQVLAELGLEMDGKMVDAPTNTPASGVARPS
ATAEDAKLDAKTEELLAQLGAL*
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mRNA from alignment at H-canaliculatus_F_contig1312:23771..28058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1312.2579.1 ID=mRNA_H-canaliculatus_F_contig1312.2579.1|Name=mRNA_H-canaliculatus_F_contig1312.2579.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4288bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1312:23771..28058+ (Hapterophycus canaliculatus Oshoro5f female)
GCGTGCGTCGCGGTCGACGTCGCAGGTCGAAGGTGATGGAAGGGAGAGTG
GGGCGCCGTGGATGGTGAACAAGCCAGTAACTACCCGACGGATTAATGAA
TAGCGCAGCCCAGCACATACAATGCAATCCCCACGGGCGTTCATTGACCA
TTTGTTCAAGTTCTCCCCGCTGTCATAAAACACCATGTTCCACAAGAAGA
AGGCCGACCCTAAAGGTAAGGAATGCCTGCAGTGGCTTATACACATCGGT
TTATGCCATCGTTGGGCGCCATGCTTTAATTCGACAGCTTTCCCTCCCCA
GCGATGAGGGAACGTTCCAGGTTCTGCCCGACGATGTTGACGTTGATATT
CTCAAAGTTCCAGCACGGAGAAATCGAGACTGTCGCCCCAAACGCCGTGC
TGCTAAAGTCATTAGCGATAGTCCTCAATTTTCGCGCACCATCTTCACTT
GTGAGACTGCGCATCCTCCTGTCTGGTTGCGCTAGTGTCTAGGTGAAGCA
GCAGAATCAACAATCAGCGATGCCGTAGACCGTTGCAGGAATTTTACACG
AGAGTTTCGCCGCATCCTGAAATCGCTCTGATCTCCCACTCTAACTGTAG
TAGATGGAGAGTACCTACCGTCGAATTAAACGAGTATTTGTAGCCCAACA
GGACTCTGCCAACTTCCTTTTTTTTGGCCTTCGTAAAAAGTTTTGTGTTT
GCCGCTAAGACAGGAGAAACGAGCGGCGAGCGTCCAAAAGCGTCGCGTGT
TGTTTATTTGTTGGAATCCTTGTTGTCACAACCCAGCCGCGGCTAAGGAC
GCGAAACGAGCAGTCCGCGCCGGTGAGCGAGACTTGGACAGGGAGTTGCG
GAATCTGGACAGGAGCGAGAAGTCACTAGTGGCGGAGATCAAGAAAACAG
CCAAGGGTGGGAACGAGGTGAAGAAGAGAAGGAACGAGGGGGAGTAAGGA
ATTAGTGTGTGTTGCTTTCCTCCCTCGAACAAATGTTTCTGCGCGGACAA
CTGTTTCTGCGCGAAGTCGCGCTACTTGTAGCCCTCGCGCTCAGCCGAAC
ACCCTTACCCCATGTAGAGCCCTTGTCGACTTCCTCGATAGTGAAATGAA
CAACGCTTGAAAATCATTCAAACTCTTGAAATAAGAGCGTAGAGAGGTGT
CAGAAACCGCACACGGTCATGGATGACTACGATTGAACACGTCGAAACAT
TAACATTTTCATCAGCTTGCGTATGACAAGCATACCTGGTACATAGGAAA
TGACAAATGTTAAGACGCTCCTGTCACTGTCGCCGCCTAGAACTGAGAAA
CGACTTGATGGGAACAAAATGATGCGCAACAACAGCGACAACGACAACGT
CGAAGACGACAACGACAATAACAACAACAACAACAACAACAACGACGACG
ACAACAACAACAACAACAACCACAACAACAACAACAACAATATGCAAATT
ACCACTTAATTCCTAAATAGGGCGCAACAAGGACACTAGCGAAGCAACTG
GTTCAGCTGCGAGGTCAAAAGGACCAGCTGTACGCGGCGCGGGCTAGGAT
AGCGGGGGTTGGGAATGCGGCGGCGTCCGCGGCGACGACAGGTAAGTGTT
GATCTCTCCTAGTTCGCTGCAAGGACGTAGCCACCACGCCATCCTTCCTT
CATGCACACAGGCACGCGCACAAGAAGCTGACAACATGGCAAATGTTGGC
AAATGTAGTACGCATACAGAACATGCCTTGGGTTTGAAACTATTCAGCAT
GTACTGGGTCGTCTGGAGTTTTTGTTTGCGAGTTGTTTTGAAATTGGAAT
GCCACGAATACAGTGTGTGTAACTGCCCTCACCTCCCTTCTCCTCTCGTC
TCTACTTAACTAAGGCTGTGCTCACCTCCCCTTACCGCCATGTGCCCCCC
GTTATCTACGTGTCTGCTCAACCAAGCGTCGCTGGCTGGGGTTATGGGCA
ACGTGGCGGGCGTCATGAAGAAGGTAAACGATTCCGTCAGCACAGAGGAG
ACGGCAAAGATCATGCAGCAGTTCGCGGTGGAGAACGAGAAGATGAACAT
GTCGGAGGAGATGATGGACGACGCACTCATCGACGCGGTGAGGCAACCCG
ATGTGCACTCTTGCTGGTGTTGTCGTTGTTGCTGTTTCTGCTGTTGTCGC
TGTTGCTGTTACCGCTGGTGTCGTCGTTGTTGCCATTGTTGCTGTTCTTG
GTGATGCTGCTACAGATGCGTCAGCGTTTCGGACCGCCGTTTTTTTTCCT
GCAGCTGTTTTCTGTGACGTATCGTATTTAAATCGCTTCCCTCCACAGCA
TCACACGCAGGTGAAAGGGTTTTACACATTGCGCCGCTTTTTAATAAAGT
GCCGATTTTCATCTGCCAACCTACCGATGGAGTCAACGTGTACAAGATAC
CAACACTGCTGTTGATACTCAGGGACCCCCCCCTCCCGGCACGTTGCTTG
ATTTTGTTCATAAAGTCTCGCGGAATCCTGTCCAGTCAGGAAAATTGCGA
GCAATGAGCCGTTGTAAGACCCACCCGTATTTTGATTCCACCCCTGTCCT
TGCCCACGCTCTCGTTTATATCTGGCTCGCGGTGGACTCCTCCACTCCCC
ACTGACCCATCCCAAGTTGCTCTGCATCTACTTCTCCGCCCCTTTCCTCG
GTTTGACTGCCATTACTCACGACATGCACCTTCTCTTCTCTGCCGGTATG
TACCAAGATTCTGCGGCTTCCAACTCCCCATGATTCCCACCCTCGCTCGT
AACTGGAACTCCAACTCGTGCCTGGTGTAGCACTCGCTCGTTCGCGCGTG
CGTATCTATGCGCCCGTGTCTTCATCCAAACTTCCCCCATTTCTGGCGTT
GATACCAATCGTTGGACGTGCTCGCCAGTTCGACGGAGAAGGCGTGGAAG
AGGAGGCCGACGGCGTTGTCAACCAGGTCTTGGCCGAGCTCGGTCTGGAG
ATGGACGGGAAGATGGTGGACGCTCCCACCAACACTCCCGCATCCGGTGT
TGCGAGACCGTCCGCGACAGCGGAAGATGCCAAGCTGGACGCTAAGACGG
AAGAGTTGTTAGCGCAGCTCGGAGCGCTGTGATTTAAATTTTTTGTTGGG
GGTATTGGGAAAGGAGAAAGGAAAGCATCCGCCTTCGTTGGTGGTGGTAG
TGGTGTTGCTGCTGCTGCTTCTGGTGCCGTGATTTTATCTGGTCGATTTG
GTTATTATTTTGAACGACACGTAAATGTCGGTGTGGGGCTCCGCTCTGTG
GATATCAGGCTAGTGGCGAGCAGCAGCTTCTTGCCATCCGTTGGTACCTT
TCTAGGTACTTCAAGATCATTAACATGTAACCTTGTTCTCCTGATGGATG
TTGATCCAACTCAAAAGGCGTTCGGATGTACAAGTACTTATTATTTGGCA
GCTGATTAGGTGAAAAAGGGACACGCGTGAACGAGTGAAGAGAGTAGAGT
GAGGTTCGATGATCGACAAACGGAAAGGAACTTGAGCTACACTCGTTGTA
CCCTTTGATGTTGGATAGGGCAAGATGAAGCAGATAACCAAAAGGCAACG
AGGGTCATGTGCCTGTTCCGTTTTCTCTGTATGAATCGATGCGTACTACA
GCAGTTGTTCAACGTTTGTCAAAATTATCACCGGTGTGGCCCAGCCGGGT
CATCGAGGCGTTCTCCGCCGTTGCCTACTCTGGGCTCACGTGTTTCGACA
GAATCAGGATAGTGCTTTCATACAAATAAGCCGACTTTCGTAGCTAGACA
TGTTTGTTTTTTCGCATATTTGGGTCGGGCCTGGCCGATCTGTTGACGGC
TCGTAACTTGTATTTCGTATTTACAGATTACGAGGCAGAGCGGATTCACC
AGCTGTGATCAAACCACAGCTGATGTCTGGAGTTCCAAGGCTTTCACCAG
TTCAATGATAGGCTTGACAGGACGAAGGAGCATTGAGATACAAAACTAGC
GAAATAAAATTCAAATCAAGTATTCGCAGATCCTGCTTATGTAAATCATG
CAGACGAAGAAAACCTTGCGTACAATTCGAAGTTGACCTGCGATTTCCAT
CTGTGTATTCTGGCTGTTATTTCCTTCTCAAGATAAGACGTGGAATGCTG
CGAGAAGGACGAGGCTGGTCGCATCATCGCACCGATGGTCTCTCTCGGCT
ACGTCAGGTACATAATTTCTCCCTTTTTTTGTTTTTTTTTTGAAAAAAGG
TTTCACAACACTAAAGGAATACCGTCTGAGGCATACACTGTCCCAGAGGG
CTTTTGTCAATTCCTTTGAGTGAGGGTTCAGTACAATT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1312:23771..28058+

>mRNA_H-canaliculatus_F_contig1312.2579.1 ID=mRNA_H-canaliculatus_F_contig1312.2579.1|Name=mRNA_H-canaliculatus_F_contig1312.2579.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1338bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1312:23771..28058+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGAGTACCTACCGTCGAATTAAACGAGTATTTGTAGCCCAACAGGA
CTCTGCCAACTTCCTTTTTTTTGGCCTTCGTAAAAAGTTTTGTATGGAGA
GTACCTACCGTCGAATTAAACGAGTATTTGTAGCCCAACAGGACTCTGCC
AACTTCCTTTTTTTTGGCCTTCGTAAAAAGTTTTGTCGAGACTTGGACAG
GGAGTTGCGGAATCTGGACAGGAGCGAGAAGTCACTAGTGGCGGAGATCA
AGAAAACAGCCAAGGGTGGGAACGAGCGAGACTTGGACAGGGAGTTGCGG
AATCTGGACAGGAGCGAGAAGTCACTAGTGGCGGAGATCAAGAAAACAGC
CAAGGGTGGGAACGAGGGCGCAACAAGGACACTAGCGAAGCAACTGGTTC
AGCTGCGAGGTCAAAAGGACCAGCTGTACGCGGCGCGGGCTAGGATAGCG
GGGGTTGGGAATGCGGCGGCGTCCGCGGCGACGACAGGGCGCAACAAGGA
CACTAGCGAAGCAACTGGTTCAGCTGCGAGGTCAAAAGGACCAGCTGTAC
GCGGCGCGGGCTAGGATAGCGGGGGTTGGGAATGCGGCGGCGTCCGCGGC
GACGACAGCGTCGCTGGCTGGGGTTATGGGCAACGTGGCGGGCGTCATGA
AGAAGGTAAACGATTCCGTCAGCACAGAGGAGACGGCAAAGATCATGCAG
CAGTTCGCGGTGGAGAACGAGAAGATGAACATGTCGGAGGAGATGATGGA
CGACGCACTCATCGACGCGCGTCGCTGGCTGGGGTTATGGGCAACGTGGC
GGGCGTCATGAAGAAGGTAAACGATTCCGTCAGCACAGAGGAGACGGCAA
AGATCATGCAGCAGTTCGCGGTGGAGAACGAGAAGATGAACATGTCGGAG
GAGATGATGGACGACGCACTCATCGACGCGTTCGACGGAGAAGGCGTGGA
AGAGGAGGCCGACGGCGTTGTCAACCAGGTCTTGGCCGAGCTCGGTCTGG
AGATGGACGGGAAGATGGTGGACGCTCCCACCAACACTCCCGCATCCGGT
GTTGCGAGACCGTCCGCGACAGCGGAAGATGCCAAGCTGGACGCTAAGAC
GGAAGAGTTGTTAGCGCAGCTCGGAGCGCTGTGATTCGACGGAGAAGGCG
TGGAAGAGGAGGCCGACGGCGTTGTCAACCAGGTCTTGGCCGAGCTCGGT
CTGGAGATGGACGGGAAGATGGTGGACGCTCCCACCAACACTCCCGCATC
CGGTGTTGCGAGACCGTCCGCGACAGCGGAAGATGCCAAGCTGGACGCTA
AGACGGAAGAGTTGTTAGCGCAGCTCGGAGCGCTGTGA
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