mRNA_H-canaliculatus_F_contig13110.2572.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13110.2572.1
Unique NamemRNA_H-canaliculatus_F_contig13110.2572.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13110.2572.1 vs. uniprot
Match: D7FGW5_ECTSI (Serine/threonine kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW5_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 7.660e-51
Identity = 95/144 (65.97%), Postives = 106/144 (73.61%), Query Frame = 1 
Query:   28 QGTGEGAKEFDLRSQEALMVEMAICTRVPSHPNVLRAVAIDDKSLSSMKIAYELASEDFARCARGSTADSAGTKMRYLAEVAMGALHLARHGYVQNDIKPGNVLLF-GPQQGATNGRAALADFGCCLAIGEERQGEGTLGSRPP 456
            +G GE A+    RSQE+L+ EM IC  VP HPNVL+AV +DD+ L  MKI Y LA  DF+RCA GST DSAGTKMRYL+EVAMG  HLA HGYV NDIKP N+LL    Q G    RA LADFGC LAIG+ER GEGTLGSRPP
Sbjct:  281 EGEGENARRRTRRSQESLLGEMVICVCVPPHPNVLQAVGVDDRELDCMKIVYHLAEGDFSRCAWGSTEDSAGTKMRYLSEVAMGLTHLANHGYVHNDIKPANILLVDSTQDGNKTTRAVLADFGCALAIGDERLGEGTLGSRPP 424
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BLAST of mRNA_H-canaliculatus_F_contig13110.2572.1 vs. uniprot
Match: D7FGW2_ECTSI (Myosin IIIA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW2_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 4.070e-38
Identity = 81/135 (60.00%), Postives = 91/135 (67.41%), Query Frame = 1 
Query:   28 QGTGEGAKEFDLRSQEALMVEMAICTRVPSHPNVLRAVAIDDKSLSSMKIAYELASEDFARCARGSTADSAGTKMRYLAEVAMGALHLARHGYVQNDIKPGNVLLF-GPQQGATNGRAALADFGCCL-AIGEERQ 426
            +G GE A+    RSQE+L+ EM IC  VP HPNVL+AV +DD+ L  MKI Y LA   F+ CA GST DSAGTKMRYL+E AMG  HLA HGYV NDIKP N+LL    Q G    RA LADFGC L AI   RQ
Sbjct:  258 EGEGENARRRTRRSQESLLGEMVICVCVPPHPNVLQAVGVDDRELDCMKIVYHLAEGAFSCCAWGSTEDSAGTKMRYLSEAAMGLTHLANHGYVHNDIKPSNILLVDSTQDGNKTTRAVLADFGCALGAINALRQ 392
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BLAST of mRNA_H-canaliculatus_F_contig13110.2572.1 vs. uniprot
Match: A0A6H5L0I7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I7_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.210e-25
Identity = 71/158 (44.94%), Postives = 92/158 (58.23%), Query Frame = 1 
Query:    1 MSRFCPVSA---QGTGEGAKEFD-LRSQEALMVEM--------AICTRVPSHPNVLRAVAIDDKSLSSMKIAYELASEDFARCARGSTADSAGTKMRYLAEVAMGALHLARHGYVQNDIKPGNVLLF-GPQQGATNGRAALA---DFGCCLAIGEERQ 426
            +  +C +S    QGT  G  + D L  QE+L +++        ++   VP HPNVL+ V +DD+ L  MKI Y LA EDF RCA GST DSAGTK+RYL+E A+G  HL  +GYV NDIKP N+LL    Q G    RA L    D  C   I ++R+
Sbjct:  195 VDTWCVLSTCLGQGTFGGVFKIDVLTLQESLAIKLIKEAMMFSSLAVSVPPHPNVLQVVGVDDRELDCMKIVYHLA-EDFDRCAWGSTEDSAGTKIRYLSEAAIGLTHLVNNGYVHNDIKPANILLVDSTQDGNKAARAELVTHCDRRCLDNIDDDRR 351
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13110.2572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FGW5_ECTSI7.660e-5165.97Serine/threonine kinase domain-containing protein ... [more]
D7FGW2_ECTSI4.070e-3860.00Myosin IIIA n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5L0I7_9PHAE1.210e-2544.94Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13110contigH-canaliculatus_F_contig13110:729..3303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.7
Seed ortholog evalue1.7e-44
Seed eggNOG ortholog2880.D7FGW5
KEGG koko:K06491
KEGG Pathwayko04514,ko05020,map04514,map05020
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko00537,ko04090,ko04131,ko04516
Hectar predicted targeting categoryother localisation
Exons4
Model size456
Cds size456
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13110.2572.1prot_H-canaliculatus_F_contig13110.2572.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13110 729..3303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929049.325946-CDS-H-canaliculatus_F_contig13110:728..8351622929049.325946-CDS-H-canaliculatus_F_contig13110:728..835Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13110 729..835 +
1696845660.271792-CDS-H-canaliculatus_F_contig13110:728..8351696845660.271792-CDS-H-canaliculatus_F_contig13110:728..835Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13110 729..835 +
1622929049.3405988-CDS-H-canaliculatus_F_contig13110:1538..16851622929049.3405988-CDS-H-canaliculatus_F_contig13110:1538..1685Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13110 1539..1685 +
1696845660.2831485-CDS-H-canaliculatus_F_contig13110:1538..16851696845660.2831485-CDS-H-canaliculatus_F_contig13110:1538..1685Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13110 1539..1685 +
1622929049.3537023-CDS-H-canaliculatus_F_contig13110:2631..27831622929049.3537023-CDS-H-canaliculatus_F_contig13110:2631..2783Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13110 2632..2783 +
1696845660.2917438-CDS-H-canaliculatus_F_contig13110:2631..27831696845660.2917438-CDS-H-canaliculatus_F_contig13110:2631..2783Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13110 2632..2783 +
1622929049.370885-CDS-H-canaliculatus_F_contig13110:3253..33031622929049.370885-CDS-H-canaliculatus_F_contig13110:3253..3303Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13110 3254..3303 +
1696845660.3003802-CDS-H-canaliculatus_F_contig13110:3253..33031696845660.3003802-CDS-H-canaliculatus_F_contig13110:3253..3303Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13110 3254..3303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13110.2572.1

>prot_H-canaliculatus_F_contig13110.2572.1 ID=prot_H-canaliculatus_F_contig13110.2572.1|Name=mRNA_H-canaliculatus_F_contig13110.2572.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=152bp
MSRFCPVSAQGTGEGAKEFDLRSQEALMVEMAICTRVPSHPNVLRAVAID
DKSLSSMKIAYELASEDFARCARGSTADSAGTKMRYLAEVAMGALHLARH
GYVQNDIKPGNVLLFGPQQGATNGRAALADFGCCLAIGEERQGEGTLGSR
PP
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mRNA from alignment at H-canaliculatus_F_contig13110:729..3303+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13110.2572.1 ID=mRNA_H-canaliculatus_F_contig13110.2572.1|Name=mRNA_H-canaliculatus_F_contig13110.2572.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2575bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13110:729..3303+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTCGATTTTGTCCCGTTTCTGCACAGGGCACGGGCGAAGGTGCGAA
GGAGTTCGACCTCAGATCACAGGAGGCGCTGATGGTGGAGATGGCGATTT
GCACCAGGTGAAACACCTTGTCTTGCCGCCATCGTGCTGATACGCAGAGC
ATAAACCTGTATCAGTCCAATCAACGCCGCGCGGTATGTGGAGTAGACAA
CGAAAAGTGGCAGAGCAAACATCCAAGTATTTGTGGTTGTGAGCAACGAT
GCGGAGTACCCTGGGACAAAAGCGCCGTTGACCGTTGATCAAGATCGGCT
AGCAGGGCTCCCTTCGAGGAGATTGCACCGCTGAAAAGTCATTACATAGC
GCTGGGTTCTAGGCTCGCTTTCTGAACCCGTAACTTCACTTTGGCTTCGC
CGCCAGTGACGACCCTTCACGGGGGTCCTTGTGTGGCGTACATTGGGTTT
CAACAGACAACCGTCTCATATCCAGTGAAGCACCCAGAGCCCACTCCCTC
GCGGAATGAACTAGAATGGCGCCGTTTCTAGACCTGCAACAATCGCAATA
TTCTCGAACACCGTTGGAGTTTAGCGTTCTCAATCACGTGTTGCAGCACC
TCAGAGGTATTGTCATAAGAAACCAGGCTGTCTTGCGTATGAGGGCCGCG
TTTCGCGCGGTGGGTGGCAGAGGATCATCTTGACAGCGAAATATCATTAC
TTCATGTGTACATAGCAGAACATCGTCGATTGCTTCATTTGTTTCTGTGG
ATGCGAGTGGCTCCGGGGCTCCGGGACCGTCAAATCAACTTCCTCTCCGT
TCCGCCTCAGAGTACCATCACACCCGAACGTCCTGCGAGCTGTCGCGATC
GACGACAAGAGCCTTTCCAGTATGAAGATTGCTTACGAGTTGGCAAGTGA
AGATTTTGCCCGGTGCGCGAGGGGCAGTACTGCGGACAGCGCAGGGACAA
AGATGCGGTGAGGGCTGTGCTTCTCGGGCCAGAAACCTCTGAGATATCGA
CATCTCGCAATCATTAGTGAACAGTCCTCCGCGACTTGTGCGCGTCGTCG
TCGCCGTGGTCGTCGTCGTCGTCATTGTAGTTGTTGTTGTTGTTGTTATT
GTTGGTGTCGTTGTGATTGTTGATGCTTTCATCGCCGCCCCGCCGGTAAG
CTGCGCAATGAATCAATGCGAAAATTCGGTTTCCCTTCCTTCCGCAAAGT
ATTCACCTACCGCCAGTGCTTGTCGTTTGGATGATTCCAAGGTGGTCTTA
CAATTTTCGGCCAAACTCCAAGCCCATCCATGTGCGCAAGTGTGGTGCTC
GTTACCTCCGCCGCTGCTCTGTTTCCCGCCGGTTCGTCTGCAACGTTCCC
GAGAATAGTGCCTAGGCTCTAGGGTATGCGGAGTGTCTAGTTTGTCCTGA
GGAACTCGTCGCACTGCTTTGCTGAACGCGCCGTCTTGATATATTGCACT
TTCTTTTCGTCCCAATGTCGAACCTCTCGATCTTTGTTTAACAGTTTACT
TTGCCTCGGTCCCTGTCCCTCCCGTCCCCTCGTGCAGCATGCAAAATCGA
CCCGCATCTGTTCTCGGATAATCTGACGTTCAAATAGATGGTGGTTGACC
TGGTCGAATTTCGCTGGAGGGTATAAGGCTACATTGCCGCTGGCCTGCTT
CTTGTATTTGTCAAATAGGCAACCTTGTAGCAACCCGTATCCATCCGTCA
TCCTGTTTTCATTTGAAACAATATCGTCTGGGACGGCGTACCCTGTGCTT
CGACCGCAAACGCCATACATTCTCTTTCACATCTCACCAATGGACACCGT
GCGTCCGCCTTCTCTTGCTCGCCTTCTGTCTTCGCACTCGGCGTGTGCCA
TGTTCAACTGTGTTGCACGGCACGGTATTGCGCTCTTCGGCGCTGTGCTG
CAGGTACCTCGCCGAGGTGGCGATGGGTGCCCTCCACCTCGCCCGACATG
GGTACGTTCAGAACGACATTAAGCCGGGCAACGTCCTGCTGTTTGGTCCC
CAGCAGGGGGCCACGAACGGCCGCGCCGCACTCGCTGACTTTGGATGCTG
CTTAGGTGAGTGTGAACCAAGCCGGCTCGCGAGAGTGTTCTATTTTTTCC
TTCAAGTTCGTTACCGAAAAAGTGTTCCACCCGGGGTATTTGCCTAGGTC
GTGCTGAGGATGAATAAGCGAAGCATTGTGGAGGTGGGTTGCGTACATGT
TCGTTTTGTCACGCACCCTTTCGCAAACCCCCCTCCTCCTCCTTTGATCG
GCTATCCTCATGGTAAAGCTCTGCGGCCAGCGTTGTGTTACGAAAATGGT
CGGGAAAGGACTTCGTTCGCTTCCTTCCCATCTCACTCTTGGTTCGGCAC
TGCAGCTGCTGCATCCCCTCCTGCTCTTCCGATTCCAACGCTAGAACGAC
AGCACCTTCCTCAGCCACCCCTCCCACCTGTCTTGCCCCCTCCGCGTACC
ACACATGGCACCACGAATACATTCACACGACAATGAATACCACGCCACCT
GCTCCCAACCACACACCGCCGGCAGCCATCGGCGAAGAGCGCCAGGGCGA
AGGTACCCTCGGGAGCAGGCCACCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13110:729..3303+

>mRNA_H-canaliculatus_F_contig13110.2572.1 ID=mRNA_H-canaliculatus_F_contig13110.2572.1|Name=mRNA_H-canaliculatus_F_contig13110.2572.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=912bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13110:729..3303+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTCGATTTTGTCCCGTTTCTGCACAGGGCACGGGCGAAGGTGCGAA
GGAGTTCGACCTCAGATCACAGGAGGCGCTGATGGTGGAGATGGCGATTT
GCACCAGATGTCTCGATTTTGTCCCGTTTCTGCACAGGGCACGGGCGAAG
GTGCGAAGGAGTTCGACCTCAGATCACAGGAGGCGCTGATGGTGGAGATG
GCGATTTGCACCAGAGTACCATCACACCCGAACGTCCTGCGAGCTGTCGC
GATCGACGACAAGAGCCTTTCCAGTATGAAGATTGCTTACGAGTTGGCAA
GTGAAGATTTTGCCCGGTGCGCGAGGGGCAGTACTGCGGACAGCGCAGGG
ACAAAGATGCGAGTACCATCACACCCGAACGTCCTGCGAGCTGTCGCGAT
CGACGACAAGAGCCTTTCCAGTATGAAGATTGCTTACGAGTTGGCAAGTG
AAGATTTTGCCCGGTGCGCGAGGGGCAGTACTGCGGACAGCGCAGGGACA
AAGATGCGGTACCTCGCCGAGGTGGCGATGGGTGCCCTCCACCTCGCCCG
ACATGGGTACGTTCAGAACGACATTAAGCCGGGCAACGTCCTGCTGTTTG
GTCCCCAGCAGGGGGCCACGAACGGCCGCGCCGCACTCGCTGACTTTGGA
TGCTGCTTAGGTACCTCGCCGAGGTGGCGATGGGTGCCCTCCACCTCGCC
CGACATGGGTACGTTCAGAACGACATTAAGCCGGGCAACGTCCTGCTGTT
TGGTCCCCAGCAGGGGGCCACGAACGGCCGCGCCGCACTCGCTGACTTTG
GATGCTGCTTAGCCATCGGCGAAGAGCGCCAGGGCGAAGGTACCCTCGGG
AGCAGGCCACCGCCATCGGCGAAGAGCGCCAGGGCGAAGGTACCCTCGGG
AGCAGGCCACCG
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