mRNA_H-canaliculatus_F_contig13101.2564.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13101.2564.1
Unique NamemRNA_H-canaliculatus_F_contig13101.2564.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13101.2564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13101contigH-canaliculatus_F_contig13101:2258..3251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size994
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13101.2564.1prot_H-canaliculatus_F_contig13101.2564.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13101 2618..3199 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929047.890753-UTR-H-canaliculatus_F_contig13101:2257..26171622929047.890753-UTR-H-canaliculatus_F_contig13101:2257..2617Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13101 2258..2617 +
1696845659.7069185-UTR-H-canaliculatus_F_contig13101:2257..26171696845659.7069185-UTR-H-canaliculatus_F_contig13101:2257..2617Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13101 2258..2617 +
1622929047.9391296-UTR-H-canaliculatus_F_contig13101:3199..32511622929047.9391296-UTR-H-canaliculatus_F_contig13101:3199..3251Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13101 3200..3251 +
1696845659.7242026-UTR-H-canaliculatus_F_contig13101:3199..32511696845659.7242026-UTR-H-canaliculatus_F_contig13101:3199..3251Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13101 3200..3251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929047.914613-CDS-H-canaliculatus_F_contig13101:2617..31991622929047.914613-CDS-H-canaliculatus_F_contig13101:2617..3199Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13101 2618..3199 +
1696845659.7153525-CDS-H-canaliculatus_F_contig13101:2617..31991696845659.7153525-CDS-H-canaliculatus_F_contig13101:2617..3199Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13101 2618..3199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13101.2564.1

>prot_H-canaliculatus_F_contig13101.2564.1 ID=prot_H-canaliculatus_F_contig13101.2564.1|Name=mRNA_H-canaliculatus_F_contig13101.2564.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=194bp
MVSCTQGRLLNETSVTDCRSWCARSFHAATLRMMCGQADSVRKWWRSNTE
GRPRSTRTSRDCCTAAAEPAGGGVDPALSTQPPDRRETRPALVKRAASHP
AASSRFWLAHWRRAGFAATKRVDEASAAPRLLFGVSPIVSKRGLRGSAAT
AGRRSLGELSMCGKALPGTFWCGPCEATAARAGSGGGLWREIL*
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mRNA from alignment at H-canaliculatus_F_contig13101:2258..3251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13101.2564.1 ID=mRNA_H-canaliculatus_F_contig13101.2564.1|Name=mRNA_H-canaliculatus_F_contig13101.2564.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=994bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13101:2258..3251+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCAGCAGCCGCGTTGCTGCTGTTCGTCCATTGGCTCTTCACTTCTTGA
GACTGCTGTGTGCGGACCGTTCGCGTGGGCGAAATCTGCAAGGCAGCACG
GAGATGGCGGATTGCCAAAAGCAAGATGGCTGCCGGCGGGATGCAGCAGC
GGAGACCTGTGTATAGCAGTTTGCGCGGCGCTTTCGATCCACTGAGCCCA
TTGCACATTGCACAGAAGACAAGACCTGCTCTACAAATAGGTTGAGTGGG
GGACTGTTACAACTGCCAGAACGAAGAAGGGTCAGAAGCCACAAGGAAGG
TGAAAATTTTCAGGGGTCGAAACAGGAAAAAGGCGGCGGGCTGCGGGCCC
CCCTCGAGAGATGGTTTCGTGTACACAAGGTCGATTACTGAACGAGACGT
CGGTGACGGACTGCAGGAGTTGGTGCGCACGGTCTTTTCATGCTGCTACA
CTTCGAATGATGTGCGGTCAAGCGGATTCTGTGCGGAAATGGTGGAGATC
CAATACTGAAGGGCGCCCGAGATCGACGCGCACCAGCAGGGACTGCTGTA
CTGCAGCCGCAGAGCCAGCCGGGGGGGGGGTTGACCCCGCGCTCTCGACC
CAGCCGCCCGACCGTCGCGAAACTCGCCCCGCGCTCGTTAAGCGTGCAGC
CTCGCACCCTGCCGCGAGCTCGCGGTTCTGGCTTGCGCATTGGCGAAGAG
CGGGGTTCGCGGCCACGAAACGCGTGGATGAGGCCTCAGCCGCACCGCGA
CTGCTGTTCGGGGTGTCCCCAATCGTCTCGAAGAGAGGCTTGCGAGGTAG
CGCCGCCACGGCCGGTCGCCGATCTCTCGGCGAGCTCTCGATGTGCGGGA
AAGCCCTCCCTGGCACGTTTTGGTGCGGTCCGTGCGAGGCGACAGCCGCC
AGGGCGGGGTCTGGGGGAGGCTTGTGGCGCGAGATCCTATAGCTGTGTGT
GGTCAAAAATGTCTGTCTGTCTGTCCGTACGTACGTATTTTCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13101:2258..3251+

>mRNA_H-canaliculatus_F_contig13101.2564.1 ID=mRNA_H-canaliculatus_F_contig13101.2564.1|Name=mRNA_H-canaliculatus_F_contig13101.2564.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1164bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13101:2258..3251+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTTCGTGTACACAAGGTCGATTACTGAACGAGACGTCGGTGACGGA
CTGCAGGAGTTGGTGCGCACGGTCTTTTCATGCTGCTACACTTCGAATGA
TGTGCGGTCAAGCGGATTCTGTGCGGAAATGGTGGAGATCCAATACTGAA
GGGCGCCCGAGATCGACGCGCACCAGCAGGGACTGCTGTACTGCAGCCGC
AGAGCCAGCCGGGGGGGGGGTTGACCCCGCGCTCTCGACCCAGCCGCCCG
ACCGTCGCGAAACTCGCCCCGCGCTCGTTAAGCGTGCAGCCTCGCACCCT
GCCGCGAGCTCGCGGTTCTGGCTTGCGCATTGGCGAAGAGCGGGGTTCGC
GGCCACGAAACGCGTGGATGAGGCCTCAGCCGCACCGCGACTGCTGTTCG
GGGTGTCCCCAATCGTCTCGAAGAGAGGCTTGCGAGGTAGCGCCGCCACG
GCCGGTCGCCGATCTCTCGGCGAGCTCTCGATGTGCGGGAAAGCCCTCCC
TGGCACGTTTTGGTGCGGTCCGTGCGAGGCGACAGCCGCCAGGGCGGGGT
CTGGGGGAGGCTTGTGGCGCGAGATCCTATAGATGGTTTCGTGTACACAA
GGTCGATTACTGAACGAGACGTCGGTGACGGACTGCAGGAGTTGGTGCGC
ACGGTCTTTTCATGCTGCTACACTTCGAATGATGTGCGGTCAAGCGGATT
CTGTGCGGAAATGGTGGAGATCCAATACTGAAGGGCGCCCGAGATCGACG
CGCACCAGCAGGGACTGCTGTACTGCAGCCGCAGAGCCAGCCGGGGGGGG
GGTTGACCCCGCGCTCTCGACCCAGCCGCCCGACCGTCGCGAAACTCGCC
CCGCGCTCGTTAAGCGTGCAGCCTCGCACCCTGCCGCGAGCTCGCGGTTC
TGGCTTGCGCATTGGCGAAGAGCGGGGTTCGCGGCCACGAAACGCGTGGA
TGAGGCCTCAGCCGCACCGCGACTGCTGTTCGGGGTGTCCCCAATCGTCT
CGAAGAGAGGCTTGCGAGGTAGCGCCGCCACGGCCGGTCGCCGATCTCTC
GGCGAGCTCTCGATGTGCGGGAAAGCCCTCCCTGGCACGTTTTGGTGCGG
TCCGTGCGAGGCGACAGCCGCCAGGGCGGGGTCTGGGGGAGGCTTGTGGC
GCGAGATCCTATAG
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