mRNA_H-canaliculatus_F_contig13100.2563.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13100.2563.1
Unique NamemRNA_H-canaliculatus_F_contig13100.2563.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13100.2563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13100contigH-canaliculatus_F_contig13100:1485..2138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size654
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13100.2563.1prot_H-canaliculatus_F_contig13100.2563.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13100 1506..1994 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929047.8030694-UTR-H-canaliculatus_F_contig13100:1484..15051622929047.8030694-UTR-H-canaliculatus_F_contig13100:1484..1505Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13100 1485..1505 +
1696845659.676761-UTR-H-canaliculatus_F_contig13100:1484..15051696845659.676761-UTR-H-canaliculatus_F_contig13100:1484..1505Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13100 1485..1505 +
1622929047.837911-UTR-H-canaliculatus_F_contig13100:1994..21381622929047.837911-UTR-H-canaliculatus_F_contig13100:1994..2138Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13100 1995..2138 +
1696845659.69735-UTR-H-canaliculatus_F_contig13100:1994..21381696845659.69735-UTR-H-canaliculatus_F_contig13100:1994..2138Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13100 1995..2138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929047.8185759-CDS-H-canaliculatus_F_contig13100:1505..19941622929047.8185759-CDS-H-canaliculatus_F_contig13100:1505..1994Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13100 1506..1994 +
1696845659.688486-CDS-H-canaliculatus_F_contig13100:1505..19941696845659.688486-CDS-H-canaliculatus_F_contig13100:1505..1994Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13100 1506..1994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13100.2563.1

>prot_H-canaliculatus_F_contig13100.2563.1 ID=prot_H-canaliculatus_F_contig13100.2563.1|Name=mRNA_H-canaliculatus_F_contig13100.2563.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=163bp
MGAKVVIYLGQLFASDRRVPFETNLGQHLVGQKRQTNLEAAGIRKRRSKL
QSMRLTIGSLSRHFFRRRRQAGAPRSEGAKRHDAICYTAVFGAERHARAF
CTSDRRTKATSFKVQVTSACPSKRAIECALPSFWFQVNSEMKGPAVDLFH
GLRARARRFALS*
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mRNA from alignment at H-canaliculatus_F_contig13100:1485..2138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13100.2563.1 ID=mRNA_H-canaliculatus_F_contig13100.2563.1|Name=mRNA_H-canaliculatus_F_contig13100.2563.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13100:1485..2138+ (Hapterophycus canaliculatus Oshoro5f female)
ATACATTTGGACGGCCATATCATGGGAGCAAAAGTTGTGATTTATCTTGG
CCAACTTTTTGCATCTGACAGAAGAGTTCCTTTTGAAACAAATCTTGGTC
AACATTTGGTCGGACAGAAGAGGCAAACAAATCTTGAGGCGGCGGGAATT
CGGAAGCGCCGGTCTAAATTACAGTCAATGAGGCTAACCATCGGGTCACT
CTCTCGCCACTTTTTTCGTCGGCGTCGTCAAGCGGGAGCTCCTCGCAGCG
AGGGCGCAAAAAGGCACGATGCTATATGCTATACAGCAGTCTTTGGTGCC
GAGAGACACGCACGCGCGTTTTGCACTTCCGACCGAAGAACAAAGGCCAC
GAGCTTCAAAGTGCAAGTAACAAGTGCATGCCCCAGCAAGCGAGCAATCG
AGTGTGCGCTGCCATCTTTTTGGTTTCAAGTCAACAGCGAAATGAAAGGA
CCGGCGGTGGATTTGTTTCATGGTCTACGCGCCAGAGCGAGACGGTTCGC
CTTGTCCTAGACCCCCGCCAGAGCGTTTGTTCGTTCTCCTCGCTAGCTCC
TGCCACAAGTGACTGCAAACGCTTCATGATCGCAATTCTCTGGGGTTGCT
CGGGGCCAATAGCGTGCTCCCTATATCCCAGTTTCGTAGACGACCAGAGA
TCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13100:1485..2138+

>mRNA_H-canaliculatus_F_contig13100.2563.1 ID=mRNA_H-canaliculatus_F_contig13100.2563.1|Name=mRNA_H-canaliculatus_F_contig13100.2563.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=978bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13100:1485..2138+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGCAAAAGTTGTGATTTATCTTGGCCAACTTTTTGCATCTGACAG
AAGAGTTCCTTTTGAAACAAATCTTGGTCAACATTTGGTCGGACAGAAGA
GGCAAACAAATCTTGAGGCGGCGGGAATTCGGAAGCGCCGGTCTAAATTA
CAGTCAATGAGGCTAACCATCGGGTCACTCTCTCGCCACTTTTTTCGTCG
GCGTCGTCAAGCGGGAGCTCCTCGCAGCGAGGGCGCAAAAAGGCACGATG
CTATATGCTATACAGCAGTCTTTGGTGCCGAGAGACACGCACGCGCGTTT
TGCACTTCCGACCGAAGAACAAAGGCCACGAGCTTCAAAGTGCAAGTAAC
AAGTGCATGCCCCAGCAAGCGAGCAATCGAGTGTGCGCTGCCATCTTTTT
GGTTTCAAGTCAACAGCGAAATGAAAGGACCGGCGGTGGATTTGTTTCAT
GGTCTACGCGCCAGAGCGAGACGGTTCGCCTTGTCCTAGATGGGAGCAAA
AGTTGTGATTTATCTTGGCCAACTTTTTGCATCTGACAGAAGAGTTCCTT
TTGAAACAAATCTTGGTCAACATTTGGTCGGACAGAAGAGGCAAACAAAT
CTTGAGGCGGCGGGAATTCGGAAGCGCCGGTCTAAATTACAGTCAATGAG
GCTAACCATCGGGTCACTCTCTCGCCACTTTTTTCGTCGGCGTCGTCAAG
CGGGAGCTCCTCGCAGCGAGGGCGCAAAAAGGCACGATGCTATATGCTAT
ACAGCAGTCTTTGGTGCCGAGAGACACGCACGCGCGTTTTGCACTTCCGA
CCGAAGAACAAAGGCCACGAGCTTCAAAGTGCAAGTAACAAGTGCATGCC
CCAGCAAGCGAGCAATCGAGTGTGCGCTGCCATCTTTTTGGTTTCAAGTC
AACAGCGAAATGAAAGGACCGGCGGTGGATTTGTTTCATGGTCTACGCGC
CAGAGCGAGACGGTTCGCCTTGTCCTAG
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