mRNA_H-canaliculatus_F_contig131.2555.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig131.2555.1 vs. uniprot
Match: A0A6H5JE11_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE11_9PHAE) HSP 1 Score: 555 bits (1430), Expect = 1.090e-176 Identity = 434/832 (52.16%), Postives = 494/832 (59.38%), Query Frame = 1
Query: 622 VTSMRPLVPAARGLGLPSLASQTMSARVLSEDTRGALSFSPSSTPL-GLGMGDTYRRRI---SSRNSSSLQQNDQHPLPGYALRLPARQARSEGGRASVRRLAGGGRDSWRAPAVAYNAVERRTGRDTTALRAVSARLDAAATAIDAVEIGVRSASDSLDSLLQLLESRPGHSV--TPRAAVGNRGSSLEMRSPAPGMVPE------ESHDSSDSQGAAREVEPAATSSVAQGTAVVSPGGPRISTASSSMAWEVLEDSSGEPSSDDTITSVSTPQTVVREGRANA-GRTASGRAREGGGGSRAANMLRGELAAGSVLPHSQREAEEQAESDEYV----ACAQTTSVGIRDAIIEESKGEPSTMVDGT--LTRTLSPRRPLSSSVGRDIVEELPSSRITEGRESSRRHGFGSLTNSRRYGGRADESTSTTRVGSRTLSGSGTSEDATVGSEVSALP----------GDAESTSNDGPRSSQATEERRSPPRGLVTADSAVILIENEVNREADSDPSDVSLPVRELEAAMDGIDTERGRLIIEIARLRGQQNQSLVHLQRLQNEQFVVRQRQVSTLSDIVNSFGRTVAAAGALPHGENSSLGRISSDVVSTLRRMLRLLSATVPAAIAA--SPSSSTVDSLPLPTTASTSPDMLASPRSSSPYPVTDAGESSAAHGAIGTLSVGGQLALRPTGVDLTQEVIDAALQALPRLAAAATAISGARRMQGYLAGLTG----DAEGRSSG-TGRSCSTETIAALPDAPSSTWDGVGEVDGG--RGCVICLSEGSTPAQSLCSLPCEHVFHRVCVGKWLRMQDSCPTCRRQVSAVENGS 3003
++S RP+VP ARGL L SL +T+SAR S S TPL G G+ DT R R S QQ+ Q+ Y LR+P R RS+GGRAS+RRLAGGGRD+WR VAY+AV R TGRDTTALRAVSARLDAA+TAIDAVEIGVRSASDSLDSLLQLLESR G +V T ++ + E S PG + SSDSQ +A + S+ + VSP + T+S M SS E D+ S PQ + AN G R EGGGGSRAA MLR E AG + E S + AQ SV D I+E+ E ST LT L+ RP+SS +++VEE+ SSR T RE+S HG G GS T G D +G + A P D ++ N PRS + RR+ PRG+ S E S +V+LPVREL +GIDTERGRLI+EIARLRGQQNQSLVHL RLQ+EQFVVRQRQVSTLSDIVNSFGRTVAAA ALPHGE+SSLGRISSDVVSTLRRMLRLLSATVPAA AA +P +S P+ TT S+ D P ++P P T E A G+ GT SVGG++ALRP GVDLTQEVIDAALQALPRLAAAATAISGA RMQGYLA L G D GR S TGR CS ETIAALPDA VGEVDGG RGCVICLSE T Q LC LPC HVFHRVCVGKWL MQDSCPTCRRQV VE GS
Sbjct: 1 MSSTRPVVPTARGLELQSLIPRTLSARA---------STSSLFTPLPGAGLADTPRSRSPPSSXXXXXXXQQDRQNHPTAYPLRVPNRHGRSDGGRASIRRLAGGGRDAWRTAPVAYSAVVRGTGRDTTALRAVSARLDAASTAIDAVEIGVRSASDSLDSLLQLLESRHGPAVSQTSLSSTSAEVDAFENGSADPGPSSRGIGEGGRAAASSDSQASAGAM------SMRSPRSSVSPPAVSLPTSSGLMVGA----SSSESPRDEFNVSTPPPQPMGPPRYANRDGAPIVARVPEGGGGSRAAIMLRREQQAGLTAFSNPEAGEHLCRSPAVLPRQDGGAQEGSVATGDTSIDETNEEHSTRTRSGQHLTSALALPRPVSSPAVQELVEEVNSSRRTAERETSESHGVG-------------------MAGSATA-GQHLPADIGIGGTMEAAPTDLAALRMLGSDRTTSLNSVPRSVREAGSRRASPRGMEGTGSGAASSTRETYAGETSGRGNVALPVREL----NGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAAALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQLAPGNS-----PVLTTTSSVSDGTPPPAPNTPRP-TAVREGQVASGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGGGTSDTVGRGSDYTGRCCSKETIAALPDASQPVEGAVGEVDGGDVRGCVICLSENDTAGQHLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGS 783
BLAST of mRNA_H-canaliculatus_F_contig131.2555.1 vs. uniprot
Match: D7FQ33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ33_ECTSI) HSP 1 Score: 443 bits (1139), Expect = 1.800e-137 Identity = 315/562 (56.05%), Postives = 351/562 (62.46%), Query Frame = 1
Query: 1396 SVSTP--QTVVREGRANA-GRTASGRAREGGGGSRAANMLRGELAAGSVLPHSQREAEEQAESDEYV----ACAQTTSVGIRDAIIEESKGEPSTMVDGT--LTRTLSPRRPLSSSVGRDIVEELPSSRITEGRESSRRHGFGSLTNSRRYGGRADESTSTTRVGSRTLSGSGTSEDATVGSEVSALPGDAES----------TSNDGPRSSQATEERRSPPRGLVTADSAVILIENEVNREADSDPSDVSLPVRELEAAMDGIDTERGRLIIEIARLRGQQNQSLVHLQRLQNEQFVVRQRQVSTLSDIVNSFGRTVAAAGALPHGENSSLGRISSDVVSTLRRMLRLLSATVPAAIAASPSSSTVDSLPLPTTASTSPDMLASPRSSSPYPVTDAGESSAAHGAIGTLSVGGQLALRPTGVDLTQEVIDAALQALPRLAAAATAISGARRMQGYLAGLTG----DAEGRSSG-TGRSCSTETIAALPDAPSSTWDGVGEVDGG--RGCVICLSEGSTPAQSLCSLPCEHVFHRVCVGKWLRMQDSCPTCRRQVSAVENGS 3003
SVSTP Q + G AN G R EGGGGSRAA+MLR E AG + E S + AQ +SV DA I+E+ E ST LT L+ RP+SS +++VEE+ SSR T RE+S HG G GS T G D +G + A P D + + + GPR + RR+ PRG+ S E N S D++LPVRELEAAM+GIDTERGRLI+EIARLRGQQNQSLVHL RLQ+EQFVVRQRQVSTLSDIVNSFGRTVAAAGALPHGE+SSLGRISSDVVSTLRRMLRLLSATVPAA AA S + P+ TT S+ PD P ++P P E AA G+ GT SVGG++ALRP GVDLTQEVIDAALQALPRLAAAATAISGA RMQGYLA L G D GR S TGR CS ETIAALPDA VGEVDGG RGCVICLSE T Q LC LPC HVFHRVCVGKWL MQDSCPTCRRQV VE GS
Sbjct: 14 SVSTPPSQPIGPPGHANRDGAPIVARVPEGGGGSRAASMLRREQQAGLTTFSNPEAGEHLCRSTAVLPRQDGGAQESSVATGDASIDETNEEHSTRTRSGQHLTSALALPRPVSSPAAQELVEEVNSSRRTAERETSESHGVG-------------------MAGSATA-GQHLPADIDIGGTMEAAPTDLAALRTLGSDRTPSLDSGPRLVREAGSRRASPRGMEGTGSGAASSTREANAGETSGRGDMALPVRELEAAMNGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAGALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQ---SAPGNSPVLTTTSSVPDGAPPPAPNAPRPAA-VREGQAASGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGGEASDTAGRRSDYTGRCCSKETIAALPDASQPVEGAVGEVDGGGVRGCVICLSENDTAGQHLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGS 551
BLAST of mRNA_H-canaliculatus_F_contig131.2555.1 vs. uniprot
Match: A0A830CTD3_9LAMI (E3 ubiquitin-protein ligase sgr9 amyloplastic n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CTD3_9LAMI) HSP 1 Score: 65.9 bits (159), Expect = 1.080e-7 Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 1
Query: 2707 LAGLTGDAEGRSSGTGRSCSTETIAALPDAPSSTWDGVGEVDGGRGCVICLSEGSTPAQSLCSLPCEHVFHRVCVGKWLRMQDSCPTCRRQV 2982
L + G EG G+ + S + ALP V V GG CVIC E + +C LPC H+FH VC+ +WLR ++CP CRR++
Sbjct: 169 LVNVMGFGEGSKGGSEEAASPAAVVALPS--------VEVVGGGGECVICKEE-MVKGREVCELPCGHLFHWVCILRWLRKTNTCPCCRRRL 251
BLAST of mRNA_H-canaliculatus_F_contig131.2555.1 vs. uniprot
Match: UPI000B77DE7B (E3 ubiquitin-protein ligase RNF181-like n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B77DE7B) HSP 1 Score: 62.4 bits (150), Expect = 2.990e-7 Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 2809 WDGVGEVDGGRGCVICLSEGSTPAQSLCSLPCEHVFHRVCVGKWLRMQDSCPTCRRQV 2982
W ++GG C ICL E S L +PC H+FH C+ +WL++++SCPTCRR++
Sbjct: 116 WRFFAAMEGGD-CAICLEELSGARFPLTKMPCSHIFHERCISRWLKVRNSCPTCRREL 172
BLAST of mRNA_H-canaliculatus_F_contig131.2555.1 vs. uniprot
Match: A0A7N0T830_KALFE (RING-type domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0T830_KALFE) HSP 1 Score: 57.0 bits (136), Expect = 1.940e-6 Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 1
Query: 2845 CVICLSEGSTPAQSLCSLPCEHVFHRVCVGKWLRMQDSCPTCR 2973
C IC+ E S +PC HVFH +C+ KWLR+ SCPTCR
Sbjct: 27 CAICMEEDQVRLNS--RMPCRHVFHTMCIEKWLRISSSCPTCR 67
BLAST of mRNA_H-canaliculatus_F_contig131.2555.1 vs. uniprot
Match: I1H503_BRADI (RING-type domain-containing protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=I1H503_BRADI) HSP 1 Score: 58.9 bits (141), Expect = 1.950e-6 Identity = 25/55 (45.45%), Postives = 33/55 (60.00%), Query Frame = 1
Query: 2845 CVICLSEGSTPAQSLCSLPCEHVFHRVCVGKWLRMQDSCPTCRRQVSAVENGSAN 3009
C ICL+ ++ LPC H FHR CVGKWLR+ +CPTCR Q+ + + N
Sbjct: 59 CAICLAADDQRKKA--ELPCGHRFHRGCVGKWLRVHGTCPTCRHQLPPMSPAARN 111
BLAST of mRNA_H-canaliculatus_F_contig131.2555.1 vs. uniprot
Match: A0A2C9WBW4_MANES (RING-type domain-containing protein n=2 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9WBW4_MANES) HSP 1 Score: 60.8 bits (146), Expect = 2.010e-6 Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1
Query: 2845 CVICLSEGSTPAQSLCSLPCEHVFHRVCVGKWLRMQDSCPTCRRQV 2982
CVICL E S +L L C H+FH C+ WL+ Q+SCPTCRR++
Sbjct: 164 CVICLEELSNSEVALTKLTCTHIFHEQCILDWLKAQNSCPTCRREL 209
BLAST of mRNA_H-canaliculatus_F_contig131.2555.1 vs. uniprot
Match: A0A5A7QEX3_STRAF (RING/U-box superfamily protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QEX3_STRAF) HSP 1 Score: 59.3 bits (142), Expect = 2.750e-6 Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1
Query: 2830 DGGRGCVICLSEGSTPAQSLCSLPCEHVFHRVCVGKWLRMQDSCPTCRRQV 2982
DGG C IC E + +C LPC H+FH +CV +WL +D+CP CRR++
Sbjct: 86 DGGGECAICREEMGA-GREVCELPCGHLFHWICVLRWLGRRDTCPCCRRRL 135
BLAST of mRNA_H-canaliculatus_F_contig131.2555.1 vs. uniprot
Match: UPI001EEB320E (E3 ubiquitin-protein ligase MPSR1-like isoform X2 n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EEB320E) HSP 1 Score: 55.8 bits (133), Expect = 3.410e-6 Identity = 24/46 (52.17%), Postives = 28/46 (60.87%), Query Frame = 1
Query: 2845 CVICLSEGSTPAQSLCSLPCEHVFHRVCVGKWLRMQDSCPTCRRQV 2982
CVIC E T LPC H FH C+GKWL +Q +CPTCR+ V
Sbjct: 15 CVICFEEFITE-YGCKRLPCNHKFHSQCIGKWLLVQKTCPTCRKNV 59
BLAST of mRNA_H-canaliculatus_F_contig131.2555.1 vs. uniprot
Match: A0A7N0UZ21_KALFE (RING-type domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UZ21_KALFE) HSP 1 Score: 57.4 bits (137), Expect = 3.820e-6 Identity = 26/51 (50.98%), Postives = 31/51 (60.78%), Query Frame = 1
Query: 2830 DGGRGCVICLSEGSTPAQSLCSLPCEHVFHRVCVGKWLRMQDSCPTCRRQV 2982
+GG C ICL+E + +LPC HVFH+VCV WL SCPTCR V
Sbjct: 49 EGGGVCAICLNELEA-GRVAATLPCTHVFHKVCVATWLWENHSCPTCRADV 98 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig131.2555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig131.2555.1 >prot_H-canaliculatus_F_contig131.2555.1 ID=prot_H-canaliculatus_F_contig131.2555.1|Name=mRNA_H-canaliculatus_F_contig131.2555.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=997bp MTVSNENPVEEHVGYSRLVTSSSLAATHSQVDLVVASIENNIGIPPPLDEback to top mRNA from alignment at H-canaliculatus_F_contig131:13339..19088+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig131.2555.1 ID=mRNA_H-canaliculatus_F_contig131.2555.1|Name=mRNA_H-canaliculatus_F_contig131.2555.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig131:13339..19088+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig131:13339..19088+ >mRNA_H-canaliculatus_F_contig131.2555.1 ID=mRNA_H-canaliculatus_F_contig131.2555.1|Name=mRNA_H-canaliculatus_F_contig131.2555.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=5982bp|location=Sequence derived from alignment at H-canaliculatus_F_contig131:13339..19088+ (Hapterophycus canaliculatus Oshoro5f female)back to top |