mRNA_H-canaliculatus_F_contig13093.2551.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13093.2551.1
Unique NamemRNA_H-canaliculatus_F_contig13093.2551.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13093.2551.1 vs. uniprot
Match: D8LK78_ECTSI (Ubiquinol cytochrome c reductase subunit QCR7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK78_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 4.100e-46
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQEPFEPYLQDIIKEVKEERLERELLNQR 246
            GLKFDDLMIEE+PDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQ+PFEPYLQDIIKEV+EERLERELLNQR
Sbjct:   32 GLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEVREERLERELLNQR 113          
BLAST of mRNA_H-canaliculatus_F_contig13093.2551.1 vs. uniprot
Match: A0A7S2GXC5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GXC5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.060e-15
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQEPFEPYLQDIIKEVKEERLERELLN 240
            GLK++D++ E  PDV +AV RL P+ Q +R RR  RA DIS KK PLP  IQ    P +PY+  ++ E +E RLERELLN
Sbjct:   30 GLKYNDILNEALPDVQKAVSRLDPDMQQSRDRRIKRALDISFKKKPLPMDIQKKLFPLDPYIDSLLDEARELRLERELLN 109          
BLAST of mRNA_H-canaliculatus_F_contig13093.2551.1 vs. uniprot
Match: A0A7S3LNZ1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LNZ1_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.750e-13
Identity = 37/79 (46.84%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQEPFEPYLQDIIKEVKEERLERELL 237
            GL+++D++I ENPDV  A++ + PE+  AR RR  RA D+S K   LP HIQA+Q P + YL + ++E+++ R ERE L
Sbjct:   26 GLRYEDVIIYENPDVQRALKYIPPEEVEARNRRIRRALDLSFKHKELPKHIQAIQAPGKFYLDETMEEMRKLRKEREEL 104          
BLAST of mRNA_H-canaliculatus_F_contig13093.2551.1 vs. uniprot
Match: A0A7S2WSF4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WSF4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.720e-12
Identity = 36/79 (45.57%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQEPFEPYLQDIIKEVKEERLERELL 237
            GL+++D+++ ENPDV  A++ +  E+Q+AR+RR  RA D++ K   LP  I+AVQEP   YLQ ++ + +  R ERELL
Sbjct:   24 GLRYEDILMTENPDVKRALQYIPKEEQIARQRRIRRAIDLNFKHQYLPKEIEAVQEPGTVYLQPLMDKFRVLREERELL 102          
BLAST of mRNA_H-canaliculatus_F_contig13093.2551.1 vs. uniprot
Match: A0A1X6NXZ7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NXZ7_PORUM)

HSP 1 Score: 65.1 bits (157), Expect = 1.070e-11
Identity = 33/77 (42.86%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQEPFEPYLQDIIKEVKEERLERE 231
            GL++DDL+ E +P+V + +R + PE+   R +R  RA D+ LKKT LPD IQA Q+ + PY++  +  +K+ +LER+
Sbjct:   41 GLRYDDLLNEYDPEVRKTIRTMPPEEAELRAKRLTRAIDVDLKKTQLPDPIQAKQDIWNPYIRSRLGALKQSQLERQ 117          
BLAST of mRNA_H-canaliculatus_F_contig13093.2551.1 vs. uniprot
Match: A0A7S2TS46_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TS46_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 1.320e-10
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQEPFEPYLQDIIKEVKEERLERELL 237
            GL++DDL+IE +PDV  A+ RL+P ++  R  R  RA D  +K + +P+H+Q  Q P   YL   I++ ++ERLE+++L
Sbjct:   46 GLRYDDLLIETDPDVITAISRLSPRERTLRTMRLKRALDCEIKHSYVPEHLQGKQGPHR-YLTPYIEQARKERLEKDIL 123          
BLAST of mRNA_H-canaliculatus_F_contig13093.2551.1 vs. uniprot
Match: A0A2V3J0E6_9FLOR (Cytochrome b-c1 complex subunit 7-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0E6_9FLOR)

HSP 1 Score: 61.2 bits (147), Expect = 3.130e-10
Identity = 31/80 (38.75%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQEPFEPYLQDIIKEVKEERLERELLN 240
            GL++DDL+ E + +V  A+ +L+P++   R +R  RA D+ +KKT LP+ IQA ++ + PYL+  I  +K+++LER++++
Sbjct:   36 GLRYDDLLNEYDDEVKHAISKLSPQELELRNKRLKRAIDLDVKKTYLPEDIQAQEDIWNPYLRTRIAALKQKKLERQIVD 115          
BLAST of mRNA_H-canaliculatus_F_contig13093.2551.1 vs. uniprot
Match: A0A059LHI6_9CHLO (Cytochrome b-c1 complex subunit 7 n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LHI6_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 3.820e-10
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 GLKFDDLMIEENP-DVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQEPFEPYLQDIIKEVKEERLERELL 237
            GL+++DLM  E+  +V EA+RRL  +   AR +R  RA D+S+K   LP  +QAVQ PFE YLQ  +  V+ ER ERE L
Sbjct:   34 GLRYEDLMDHEHDLNVNEALRRLPQDVVDARNQRIKRALDLSMKHAELPKELQAVQTPFESYLQATLDVVRAERAEREAL 113          
BLAST of mRNA_H-canaliculatus_F_contig13093.2551.1 vs. uniprot
Match: M2XVT8_GALSU (Ubiquinol-cytochrome c reductase subunit 7 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XVT8_GALSU)

HSP 1 Score: 60.8 bits (146), Expect = 4.520e-10
Identity = 30/73 (41.10%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQEPFEPYLQDIIKEVKEER 219
            GL++DDL+ E++PDV +A+  L   ++  R +R  RAFD+S+KKT LP+ I   ++ + PYL+  I+ ++ ER
Sbjct:   37 GLRYDDLLNEQDPDVKQAIEMLPEHEKQLRAKRFIRAFDLSMKKTQLPEEIAQKEDIWNPYLRSRIQLIRRER 109          
BLAST of mRNA_H-canaliculatus_F_contig13093.2551.1 vs. uniprot
Match: A0A3M6TEI6_POCDA (Cytochrome b-c1 complex subunit 7 n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6TEI6_POCDA)

HSP 1 Score: 59.3 bits (142), Expect = 1.850e-9
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQEPFEPYLQDIIKEVKEERLEREL 234
            GL+  DL+ E++PDV EAV+RL+PE    R+ R  RA D+++K T LP       E    Y+Q +I +VK+ER+ERE+
Sbjct:   36 GLRRGDLLNEDDPDVKEAVKRLSPEDFNLRQFRIKRALDLTMKHTILPKEHWTTSEEDTMYIQPLIDQVKKERIEREM 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13093.2551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK78_ECTSI4.100e-4696.34Ubiquinol cytochrome c reductase subunit QCR7 n=2 ... [more]
A0A7S2GXC5_9STRA1.060e-1552.50Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3LNZ1_9STRA7.750e-1346.84Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2WSF4_9STRA3.720e-1245.57Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A1X6NXZ7_PORUM1.070e-1142.86Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S2TS46_9EUKA1.320e-1041.77Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A2V3J0E6_9FLOR3.130e-1038.75Cytochrome b-c1 complex subunit 7-1 n=1 Tax=Gracil... [more]
A0A059LHI6_9CHLO3.820e-1048.75Cytochrome b-c1 complex subunit 7 n=1 Tax=Helicosp... [more]
M2XVT8_GALSU4.520e-1041.10Ubiquinol-cytochrome c reductase subunit 7 n=1 Tax... [more]
A0A3M6TEI6_POCDA1.850e-944.87Cytochrome b-c1 complex subunit 7 n=2 Tax=Pocillop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13093contigH-canaliculatus_F_contig13093:1136..1721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue2.1e-08
Seed eggNOG ortholog44056.XP_009037032.1
KEGG koko:K00417
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00152
EggNOG free text desc.Ubiquinol-cytochrome C reductase complex 14kD subunit
EggNOG OGs2E3C6@1,2SAFS@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionubiquinol cytochrome c reductase subunit QCR7
Ec32 orthologEc-08_003040.1
Exons2
Model size249
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13093.2551.1prot_H-canaliculatus_F_contig13093.2551.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13093 1157..1721 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929044.6082227-UTR-H-canaliculatus_F_contig13093:1135..11561622929044.6082227-UTR-H-canaliculatus_F_contig13093:1135..1156Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13093 1136..1156 +
1696845658.731482-UTR-H-canaliculatus_F_contig13093:1135..11561696845658.731482-UTR-H-canaliculatus_F_contig13093:1135..1156Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13093 1136..1156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929044.622979-CDS-H-canaliculatus_F_contig13093:1156..13121622929044.622979-CDS-H-canaliculatus_F_contig13093:1156..1312Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13093 1157..1312 +
1696845658.7476048-CDS-H-canaliculatus_F_contig13093:1156..13121696845658.7476048-CDS-H-canaliculatus_F_contig13093:1156..1312Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13093 1157..1312 +
1622929044.6342099-CDS-H-canaliculatus_F_contig13093:1649..17211622929044.6342099-CDS-H-canaliculatus_F_contig13093:1649..1721Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13093 1650..1721 +
1696845658.7601237-CDS-H-canaliculatus_F_contig13093:1649..17211696845658.7601237-CDS-H-canaliculatus_F_contig13093:1649..1721Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13093 1650..1721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13093.2551.1

>prot_H-canaliculatus_F_contig13093.2551.1 ID=prot_H-canaliculatus_F_contig13093.2551.1|Name=mRNA_H-canaliculatus_F_contig13093.2551.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=76bp
MIEENPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQEP
FEPYLQDIIKEVKEERLERELLNQR*
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mRNA from alignment at H-canaliculatus_F_contig13093:1136..1721+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13093.2551.1 ID=mRNA_H-canaliculatus_F_contig13093.2551.1|Name=mRNA_H-canaliculatus_F_contig13093.2551.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=586bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13093:1136..1721+ (Hapterophycus canaliculatus Oshoro5f female)
GGGCTCAAGTTTGATGACCTCATGATTGAGGAAAATCCCGACGTGGCGGA GGCAGTCAGGCGCCTCACCCCCGAGCAGCAGCTCGCGCGCAAGCGCCGCC AGTTCCGGGCGTTCGATATCTCGCTCAAGAAGACGCCACTGCCAGACCAC ATCCAGGCCGTCCAGGAGCCGTTCGAGGTGTGTGCGCTCTCTTGTGTGCT CACCGACTACTGTTGTTGTAGTTGTTTACCCTGATGCTCCTGATGACAAA TGTTTAGCCACCCCAACGGTGATGCGGGGAACGACACCACAAAGCCACCC CCGGAGTTTAAGCCTCAACCCCTTTGCACTATCTATCTTGGTCAACGCTT TTCACCTGAATCTCTTCGGAAGGCTCACGTCAAGTTTCGTGAGTTCTGAT TTCGCATCCCTCTCACCCTCACCCACCCACCACCTCGCTCGCTCCTCACT TGCCCATGCCCCCGCCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC TCCCTCCCTGACAGCCGTACTTGCAAGACATCATCAAGGAGGTCAAGGAA GAGAGGCTGGAGAGAGAGCTCCTGAACCAGCGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13093:1136..1721+

>mRNA_H-canaliculatus_F_contig13093.2551.1 ID=mRNA_H-canaliculatus_F_contig13093.2551.1|Name=mRNA_H-canaliculatus_F_contig13093.2551.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=456bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13093:1136..1721+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATTGAGGAAAATCCCGACGTGGCGGAGGCAGTCAGGCGCCTCACCCC
CGAGCAGCAGCTCGCGCGCAAGCGCCGCCAGTTCCGGGCGTTCGATATCT
CGCTCAAGAAGACGCCACTGCCAGACCACATCCAGGCCGTCCAGGAGCCG
TTCGAGATGATTGAGGAAAATCCCGACGTGGCGGAGGCAGTCAGGCGCCT
CACCCCCGAGCAGCAGCTCGCGCGCAAGCGCCGCCAGTTCCGGGCGTTCG
ATATCTCGCTCAAGAAGACGCCACTGCCAGACCACATCCAGGCCGTCCAG
GAGCCGTTCGAGCCGTACTTGCAAGACATCATCAAGGAGGTCAAGGAAGA
GAGGCTGGAGAGAGAGCTCCTGAACCAGCGGTGACCGTACTTGCAAGACA
TCATCAAGGAGGTCAAGGAAGAGAGGCTGGAGAGAGAGCTCCTGAACCAG
CGGTGA
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