mRNA_H-canaliculatus_F_contig1309.2549.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1309.2549.1
Unique NamemRNA_H-canaliculatus_F_contig1309.2549.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1309.2549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1309contigH-canaliculatus_F_contig1309:25874..26324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.5212414-CDS-H-canaliculatus_F_contig1309:25873..262631622929042.5212414-CDS-H-canaliculatus_F_contig1309:25873..26263Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1309 25874..26263 +
1696845658.3902662-CDS-H-canaliculatus_F_contig1309:25873..262631696845658.3902662-CDS-H-canaliculatus_F_contig1309:25873..26263Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1309 25874..26263 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.5534785-UTR-H-canaliculatus_F_contig1309:26263..263241622929042.5534785-UTR-H-canaliculatus_F_contig1309:26263..26324Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1309 26264..26324 +
1696845658.3999982-UTR-H-canaliculatus_F_contig1309:26263..263241696845658.3999982-UTR-H-canaliculatus_F_contig1309:26263..26324Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1309 26264..26324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1309.2549.1prot_H-canaliculatus_F_contig1309.2549.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1309 25874..26263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1309.2549.1

>prot_H-canaliculatus_F_contig1309.2549.1 ID=prot_H-canaliculatus_F_contig1309.2549.1|Name=mRNA_H-canaliculatus_F_contig1309.2549.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=130bp
GELTRELILADVVTSGRCRRLCVAEVDEWAACPSARGVSIQCCMALPSKI
DRNEKLASGSTSSSSCASVFCFGCVRHRASSCPILIAPRDGLDPSHCLVL
VPAAPFRSRERLSSASFLVRLIIFSSLLH*
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mRNA from alignment at H-canaliculatus_F_contig1309:25874..26324+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1309.2549.1 ID=mRNA_H-canaliculatus_F_contig1309.2549.1|Name=mRNA_H-canaliculatus_F_contig1309.2549.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=451bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1309:25874..26324+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGAACTGACACGAGAACTCATCCTTGCGGATGTGGTTACAAGTGGGCG
GTGCAGACGGCTTTGCGTCGCCGAAGTGGATGAGTGGGCGGCGTGCCCAT
CGGCGCGAGGTGTATCCATTCAATGTTGTATGGCATTGCCTTCAAAGATT
GACCGAAACGAAAAATTGGCGTCGGGTTCGACCTCGAGTAGCAGTTGTGC
AAGCGTGTTCTGCTTCGGCTGTGTGCGGCATAGAGCGTCGAGCTGCCCAA
TCCTCATCGCTCCCCGTGATGGCCTTGATCCTTCACATTGCCTGGTTTTG
GTGCCCGCCGCCCCGTTTCGCTCTAGAGAGCGTCTCTCCTCTGCGTCGTT
TTTGGTTCGCCTCATAATCTTCTCATCACTGCTGCACTGATTGACCATTG
CTGCGTCGACTTGATTCTGCTTGGGCGTCGTTTGCATTTGTTTTTCGCAG
G
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1309:25874..26324+

>mRNA_H-canaliculatus_F_contig1309.2549.1 ID=mRNA_H-canaliculatus_F_contig1309.2549.1|Name=mRNA_H-canaliculatus_F_contig1309.2549.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=780bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1309:25874..26324+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGAACTGACACGAGAACTCATCCTTGCGGATGTGGTTACAAGTGGGCG
GTGCAGACGGCTTTGCGTCGCCGAAGTGGATGAGTGGGCGGCGTGCCCAT
CGGCGCGAGGTGTATCCATTCAATGTTGTATGGCATTGCCTTCAAAGATT
GACCGAAACGAAAAATTGGCGTCGGGTTCGACCTCGAGTAGCAGTTGTGC
AAGCGTGTTCTGCTTCGGCTGTGTGCGGCATAGAGCGTCGAGCTGCCCAA
TCCTCATCGCTCCCCGTGATGGCCTTGATCCTTCACATTGCCTGGTTTTG
GTGCCCGCCGCCCCGTTTCGCTCTAGAGAGCGTCTCTCCTCTGCGTCGTT
TTTGGTTCGCCTCATAATCTTCTCATCACTGCTGCACTGAGGTGAACTGA
CACGAGAACTCATCCTTGCGGATGTGGTTACAAGTGGGCGGTGCAGACGG
CTTTGCGTCGCCGAAGTGGATGAGTGGGCGGCGTGCCCATCGGCGCGAGG
TGTATCCATTCAATGTTGTATGGCATTGCCTTCAAAGATTGACCGAAACG
AAAAATTGGCGTCGGGTTCGACCTCGAGTAGCAGTTGTGCAAGCGTGTTC
TGCTTCGGCTGTGTGCGGCATAGAGCGTCGAGCTGCCCAATCCTCATCGC
TCCCCGTGATGGCCTTGATCCTTCACATTGCCTGGTTTTGGTGCCCGCCG
CCCCGTTTCGCTCTAGAGAGCGTCTCTCCTCTGCGTCGTTTTTGGTTCGC
CTCATAATCTTCTCATCACTGCTGCACTGA
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