mRNA_H-canaliculatus_F_contig1308.2543.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1308.2543.1
Unique NamemRNA_H-canaliculatus_F_contig1308.2543.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1308.2543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1308contigH-canaliculatus_F_contig1308:5216..6560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_009210.1
Hectar predicted targeting categoryother localisation
Exons2
Model size776
Cds size513
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.2521303-CDS-H-canaliculatus_F_contig1308:5215..56811622929042.2521303-CDS-H-canaliculatus_F_contig1308:5215..5681Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1308 5216..5681 -
1696845658.3126051-CDS-H-canaliculatus_F_contig1308:5215..56811696845658.3126051-CDS-H-canaliculatus_F_contig1308:5215..5681Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1308 5216..5681 -
1622929042.2678952-CDS-H-canaliculatus_F_contig1308:6251..62981622929042.2678952-CDS-H-canaliculatus_F_contig1308:6251..6298Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1308 6252..6298 -
1696845658.3309035-CDS-H-canaliculatus_F_contig1308:6251..62981696845658.3309035-CDS-H-canaliculatus_F_contig1308:6251..6298Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1308 6252..6298 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.292965-UTR-H-canaliculatus_F_contig1308:6298..65601622929042.292965-UTR-H-canaliculatus_F_contig1308:6298..6560Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1308 6299..6560 -
1696845658.343207-UTR-H-canaliculatus_F_contig1308:6298..65601696845658.343207-UTR-H-canaliculatus_F_contig1308:6298..6560Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1308 6299..6560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1308.2543.1prot_H-canaliculatus_F_contig1308.2543.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1308 5216..6298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1308.2543.1

>prot_H-canaliculatus_F_contig1308.2543.1 ID=prot_H-canaliculatus_F_contig1308.2543.1|Name=mRNA_H-canaliculatus_F_contig1308.2543.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=171bp
MDGVLATGATRYRPCRTCSASATLASRVFTTDGLAFSARNQFHVAVAVSG
LAFTFPPAPGVREFSARAISADSYATFREAAAMSALAECLVRLALHYGLP
KVCTNYVLPSSDAEALQVVASKLAPTAGAAAASSSVPAPSSAPFPRWPFR
FSVTSRSSWLARALRLRARRM
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mRNA from alignment at H-canaliculatus_F_contig1308:5216..6560-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1308.2543.1 ID=mRNA_H-canaliculatus_F_contig1308.2543.1|Name=mRNA_H-canaliculatus_F_contig1308.2543.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1345bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1308:5216..6560- (Hapterophycus canaliculatus Oshoro5f female)
TGGTGGTGTATAAGGAACAGGAAATAGTTTTTCATTGGGTTTGTTAGGAT
TGGGCACTGGAGTAGTACGTACTGCGAGTTCCTAGGAACTGGTTGGAAGT
GTTTCGGTTTACCAGTACATTGCATGTCTTACGTATGTCCTGTATAACGC
CTCACAAACCAATGGAAACCCAGTTATTCATGACGCACATAAGAAGATGG
AGAGCAGGAGAGAAAAGGGAGGGAGGGAAGACAGGCACACAAAAGCATAG
AAACACCAAAAGATGGATGGCGTCCTTGCCACCGGGGCCACCCGCTACAG
ACCCTGCAGGTGGGTCTGAGAATGTGGCGTCTGGCGCGAACTCGGATGAT
GATGGGGCGCAAGTATTGCCCCGCATTCACCATGCCGTAAAAAGCGGCAG
CCTCTGCCGAAAATTTGATCAAAAATAGCTTCAGCCGAAGACATAAATGT
TGCATGTTGAACGTGAGGAAACGTCGCGAAGTTCTTTTTGATACTCAATC
CTACGGAGTAGAGTAGAGGCCCCGTATGTAAGACCAGGGACGGCAGGTTA
CCATCCCATCCTACGGCCCCGCCTCAGATCCTTGTGTTACAGCCACCTGT
TATTGTTCGCCTAAAACCATCGGAAATAGACTAGATTCAAGGGAAAACAG
AGTGGATCTAATGTATTCGGCTAGAACGCGAGCTCGCGCCCAAAGGGGGC
GTGGTAGTGGCCGGTCTCGAGGTCGAGGCCGCTTCTCGGTGCGAGCCCCC
GCGCCCGTGCCCGCGCCCGCGCCGTCGGCGGTTCCGGCTTCGGCATCTCG
TTGCGTACCTCCCTTTCTGTACGCAACCACGACGGCACTGGTCGATCGGT
CCACCGACTTCCTCTCACTCTCTTGCCAGGACCTGCTCGGCCTCGGCCAC
CTTGGCCAGCCGGGTGTTCACCACGGACGGGTTGGCCTTCAGTGCGCGCA
ACCAGTTCCACGTTGCGGTCGCCGTTTCCGGCCTGGCTTTTACTTTTCCG
CCCGCACCTGGCGTAAGGGAGTTTTCAGCTCGGGCCATTTCGGCGGACTC
TTATGCCACTTTCCGCGAAGCGGCGGCCATGTCGGCGCTCGCTGAGTGCC
TGGTCCGCCTAGCTCTCCACTACGGCCTCCCGAAGGTGTGTACCAACTAC
GTCCTCCCCTCTTCTGACGCGGAGGCTCTGCAAGTGGTGGCAAGCAAGCT
AGCACCCACGGCAGGGGCGGCGGCAGCAAGTTCTTCCGTTCCGGCTCCAT
CTTCGGCCCCCTTTCCCCGGTGGCCGTTTCGGTTCTCGGTGACTTCGCGC
AGCAGTTGGCTCGCGCGTGCCTTGCGTCTCAGAGCTCGGCGGATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1308:5216..6560-

>mRNA_H-canaliculatus_F_contig1308.2543.1 ID=mRNA_H-canaliculatus_F_contig1308.2543.1|Name=mRNA_H-canaliculatus_F_contig1308.2543.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1026bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1308:5216..6560- (Hapterophycus canaliculatus Oshoro5f female)
ATGGATGGCGTCCTTGCCACCGGGGCCACCCGCTACAGACCCTGCAGATG
GATGGCGTCCTTGCCACCGGGGCCACCCGCTACAGACCCTGCAGGACCTG
CTCGGCCTCGGCCACCTTGGCCAGCCGGGTGTTCACCACGGACGGGTTGG
CCTTCAGTGCGCGCAACCAGTTCCACGTTGCGGTCGCCGTTTCCGGCCTG
GCTTTTACTTTTCCGCCCGCACCTGGCGTAAGGGAGTTTTCAGCTCGGGC
CATTTCGGCGGACTCTTATGCCACTTTCCGCGAAGCGGCGGCCATGTCGG
CGCTCGCTGAGTGCCTGGTCCGCCTAGCTCTCCACTACGGCCTCCCGAAG
GTGTGTACCAACTACGTCCTCCCCTCTTCTGACGCGGAGGCTCTGCAAGT
GGTGGCAAGCAAGCTAGCACCCACGGCAGGGGCGGCGGCAGCAAGTTCTT
CCGTTCCGGCTCCATCTTCGGCCCCCTTTCCCCGGTGGCCGTTTCGGTTC
TCGGTGACTTCGCGCAGCAGTTGGCTCGCGCGTGCCTTGCGTCTCAGAGC
TCGGCGGATGGACCTGCTCGGCCTCGGCCACCTTGGCCAGCCGGGTGTTC
ACCACGGACGGGTTGGCCTTCAGTGCGCGCAACCAGTTCCACGTTGCGGT
CGCCGTTTCCGGCCTGGCTTTTACTTTTCCGCCCGCACCTGGCGTAAGGG
AGTTTTCAGCTCGGGCCATTTCGGCGGACTCTTATGCCACTTTCCGCGAA
GCGGCGGCCATGTCGGCGCTCGCTGAGTGCCTGGTCCGCCTAGCTCTCCA
CTACGGCCTCCCGAAGGTGTGTACCAACTACGTCCTCCCCTCTTCTGACG
CGGAGGCTCTGCAAGTGGTGGCAAGCAAGCTAGCACCCACGGCAGGGGCG
GCGGCAGCAAGTTCTTCCGTTCCGGCTCCATCTTCGGCCCCCTTTCCCCG
GTGGCCGTTTCGGTTCTCGGTGACTTCGCGCAGCAGTTGGCTCGCGCGTG
CCTTGCGTCTCAGAGCTCGGCGGATG
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