mRNA_H-canaliculatus_F_contig13074.2541.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13074.2541.1
Unique NamemRNA_H-canaliculatus_F_contig13074.2541.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13074.2541.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 271 bits (694), Expect = 2.560e-81
Identity = 191/280 (68.21%), Postives = 198/280 (70.71%), Query Frame = 1 
Query:    1 KLMGASVSKAIAVDEVAPGAAASSCAEDAFFVAQRCAKRALATGHAGAASTVVNHAGNTLGVDLLEALVRKVKSTLSTLPAGGGGTLDLTIKQLGQIDFTDLSSLKDQLQMDNWEGMGAGLASDLTSSATAAISNIRRTGAGAVPGASGGVGAGGGLGSIPGGAAGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGSMPNNKCLVYVNTLEACSGFAVRLREMLERDASAAFG--VGRGGGGPGHDAERVMSCLQELGSTRALFSRAASDCLEEV 834
            +L+ ASVSKAIAVDEVAPGAAASSCAEDAFFVAQRCAKRALATGHAGAAS VVNH GNTLGVDLLEALVRK                                   DQLQMDNWEGMGAGLASDLTSSATAAISNIRRTGAGAVPG SGG+ AG             XXXXXXXX              XXXXXXXXX  G+M +N+CLVYVNTLEACS FAVRLREMLERDASAAFG          GHDAERVMSCLQ LGSTRALF+RAASDCLEEV
Sbjct:  468 QLLEASVSKAIAVDEVAPGAAASSCAEDAFFVAQRCAKRALATGHAGAASAVVNHVGNTLGVDLLEALVRK-----------------------------------DQLQMDNWEGMGAGLASDLTSSATAAISNIRRTGAGAVPGVSGGISAGXXXXXXX--XXXXXXXXXXXXRPDASSAMMGGGVSXXXXXXXXXXXGNMNSNECLVYVNTLEACSTFAVRLREMLERDASAAFGGXXXXXXXXAGHDAERVMSCLQGLGSTRALFTRAASDCLEEV 710
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BLAST of mRNA_H-canaliculatus_F_contig13074.2541.1 vs. uniprot
Match: A0A836C9B0_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9B0_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.570e-15
Identity = 111/288 (38.54%), Postives = 141/288 (48.96%), Query Frame = 1 
Query:   16 SVSKAIAVDEVAP--GAAASSCAEDAFFVAQRCAKRALATG------------HAGAASTVVNHAGNTLGVDLLEALVRKVKSTLSTLPAGGG--GTLDLTIKQLGQIDFTDLSSLKDQLQ--MDNWEGMGAGLASDLTSSATAAISNIRRTGAGAVPGASGGVGAGGGLGSIPGGAAGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGSMPNNKCLVYVNTLEACSGFAVRLREMLERDASAAFGVGRGGGGPGHDAERVMSCLQELGSTRALFSRAASDCL 825
            S+ KA+A+DEV    G   SSC EDAFFVAQ      L                       +  +G     + LEAL  +V+++L TLP  GG  G LD+ ++QLGQIDF+DL +L  Q Q  +   +G+G  +ASDLTS  T+A++NI   G                     GG    XXXXX  X  XXXXXXX     XXXXXXXXX GG      CLVY+N LEAC   A RL   L R+    F  GRG       A+ +++CL EL      F + +   L
Sbjct:   93 SLRKALAIDEVHGHGGLVTSSCVEDAFFVAQPWLVVVLYKSVDLSXXXXXXXXXXXQLQPQLYQSG-----EFLEALAGQVRASLGTLPGLGGTAGGLDVALRQLGQIDFSDLGNLGAQFQDNLQGLQGIGQNIASDLTSLGTSALTNIPLRG---------------------GGTGXXXXXXXAAXQGXXXXXXXAAGGAXXXXXXXXXTGG---RGACLVYLNDLEACGQCAARLGAELVREVPETFQEGRG-------AQLLLACLGELSGAADAFDQRSQRSL 344
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BLAST of mRNA_H-canaliculatus_F_contig13074.2541.1 vs. uniprot
Match: A0A7S2V6Z6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6Z6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.300e-10
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 1 
Query:   82 DAFFVAQRCAKRALATGHAGAASTVVNHAGNTLGVDLLEALVRKVKSTLSTLPAGGGGTLDLTIKQLGQIDFTDLSSLKDQLQMDNWEGMGAGLASD-LTSSATAAISNIR 411
            D F+VAQRCAKRA+ATGH G+ S V+NH  N L  DLL+ L  K+ S +++L        DL   QL Q  +  ++       +D+  GMG  +A+  L   A+AA+S IR
Sbjct:    2 DVFYVAQRCAKRAMATGHGGSGSAVINHVNNCLASDLLQPLFTKLSSAINSLAPPA----DLAGSQLQQ-HWRKITG-----GIDSLAGMGIDMANQPLAGVASAAVSRIR 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13074.2541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE2.560e-8168.21Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A836C9B0_9STRA1.570e-1538.54Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A7S2V6Z6_9STRA2.300e-1041.44Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13074contigH-canaliculatus_F_contig13074:149..2711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score356.7
Seed ortholog evalue9.9e-96
Seed eggNOG ortholog2880.D7FT87
KEGG koko:K20291
EggNOG free text desc.Golgi vesicle prefusion complex stabilization
EggNOG OGsKOG0412@1,KOG0412@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved oligomeric Golgi complex, subunit 4
Ec32 orthologEc-06_003700.1
Exons4
Model size834
Cds size828
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13074.2541.1prot_H-canaliculatus_F_contig13074.2541.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13074 155..2711 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.0762885-UTR-H-canaliculatus_F_contig13074:148..1541622929042.0762885-UTR-H-canaliculatus_F_contig13074:148..154Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13074 149..154 +
1696845658.222438-UTR-H-canaliculatus_F_contig13074:148..1541696845658.222438-UTR-H-canaliculatus_F_contig13074:148..154Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13074 149..154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.0912457-CDS-H-canaliculatus_F_contig13074:154..3611622929042.0912457-CDS-H-canaliculatus_F_contig13074:154..361Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13074 155..361 +
1696845658.2334275-CDS-H-canaliculatus_F_contig13074:154..3611696845658.2334275-CDS-H-canaliculatus_F_contig13074:154..361Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13074 155..361 +
1622929042.1018283-CDS-H-canaliculatus_F_contig13074:846..9511622929042.1018283-CDS-H-canaliculatus_F_contig13074:846..951Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13074 847..951 +
1696845658.2412689-CDS-H-canaliculatus_F_contig13074:846..9511696845658.2412689-CDS-H-canaliculatus_F_contig13074:846..951Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13074 847..951 +
1622929042.1122608-CDS-H-canaliculatus_F_contig13074:1511..16061622929042.1122608-CDS-H-canaliculatus_F_contig13074:1511..1606Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13074 1512..1606 +
1696845658.249253-CDS-H-canaliculatus_F_contig13074:1511..16061696845658.249253-CDS-H-canaliculatus_F_contig13074:1511..1606Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13074 1512..1606 +
1622929042.122899-CDS-H-canaliculatus_F_contig13074:2290..27111622929042.122899-CDS-H-canaliculatus_F_contig13074:2290..2711Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13074 2291..2711 +
1696845658.257565-CDS-H-canaliculatus_F_contig13074:2290..27111696845658.257565-CDS-H-canaliculatus_F_contig13074:2290..2711Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13074 2291..2711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13074.2541.1

>prot_H-canaliculatus_F_contig13074.2541.1 ID=prot_H-canaliculatus_F_contig13074.2541.1|Name=mRNA_H-canaliculatus_F_contig13074.2541.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=276bp
MGASVSKAIAVDEVAPGAAASSCAEDAFFVAQRCAKRALATGHAGAASTV
VNHAGNTLGVDLLEALVRKVKSTLSTLPAGGGGTLDLTIKQLGQIDFTDL
SSLKDQLQMDNWEGMGAGLASDLTSSATAAISNIRRTGAGAVPGASGGVG
AGGGLGSIPGGAAGMMMGGGGPGRPDASSSAMMMGGGAAGGGGGGGVGGS
MPNNKCLVYVNTLEACSGFAVRLREMLERDASAAFGVGRGGGGPGHDAER
VMSCLQELGSTRALFSRAASDCLEEV
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mRNA from alignment at H-canaliculatus_F_contig13074:149..2711+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13074.2541.1 ID=mRNA_H-canaliculatus_F_contig13074.2541.1|Name=mRNA_H-canaliculatus_F_contig13074.2541.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2563bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13074:149..2711+ (Hapterophycus canaliculatus Oshoro5f female)
AAGCTCATGGGAGCGTCGGTGTCGAAGGCGATCGCGGTGGACGAGGTGGC
GCCAGGGGCCGCGGCGTCGTCTTGCGCCGAGGACGCCTTCTTCGTCGCCC
AGCGTTGCGCCAAGCGCGCCCTGGCGACGGGGCACGCGGGCGCCGCCTCT
ACGGTGGTGAACCACGCCGGTAACACCCTCGGCGTCGACCTCCTGGAGGC
GCTCGTTCGAAAGGTGTGCGTTGGTGCGCACTGCGTTAGCGGGGGCGGGG
GGGGGAGGGTTGTTGTCGTGCCGTTCTTTTTTTGTCGCCTTGGCTTGCGT
TCTCGTTTCCGTTGCTTTTGGCTCTCAGGGGGGTTGGCGTCGCTTTGTCT
CGGCGGGTGGTGCTGCGTCGGCGTCTACCTAGGCTAGTGGGTAGGCGTAG
TTGGCGCCTGATCGGCTCGTCTGTGTTTGATGCGCGATACGTGCCGTGGA
AAAATGAATGAAAGAAGTGCCCAAGAGGGAGCGGCACGGAAAGAAAGTGG
CCTGGGGAATTTGCCGGGTCAAACGTCGAGAATTGGTGGTGGCAAAAAAA
ATGATTCGAGGCTCGGTCGACAACGCACGAGGACGGAGACGACCGGAGCC
GAGGCCGAGATCTCGACCATCCTCCTACCTGCGCCCTGGTGCTGCCCGTT
GAAACCCGGTTACCCACCGTTCCCCGTGCGATGCCTTGATCCTCACAGGT
GAAGTCAACCCTCTCTACCCTGCCGGCCGGTGGGGGGGGCACGTTGGATC
TGACCATCAAGCAGCTGGGGCAGATAGACTTCACCGACTTGTCGTCCCTC
AAGGTATGACAACCTCCCCCCCCCCCCCCAGCCCCCCCGCTGTTTGTTGT
TCTGCTTGTTGATTCGCATCCCGGGGTTGAAAGGTGACTCGTTGTTGCTG
TTGCTGTTGCTGTTGCTGTTTCTGTTGCTGTGGTTGCTGCTGCTGCTGCT
GCTGCTGCTGTTGCTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGCTTT
GGTGGTGTTGGTGGCGCTGCTGACACGCTGCCATCCTTCTTGCACGAATA
AGCGCTACAATAGGGCTGCGAGGAAGCGTCTACTTGGATTGGGGCGTACA
TCGTTTGGTCGCCGCTGCTGCCGTCTCTCATCTCTCTCTGGCGTACGTCG
TCCCACCCATGCTTTCGCGGCAAAGCCGTCTTCTCTCCCCGCGTTGCCTG
ATCTTGTCCTTGTACACATCGATCGCAGAAACGACCCCAATGCCTTCATC
AACGTTGCGTCCCCCCCCCGTTTCTCTCCGCACCACCTGTCGCCTTCACC
CCACTTACCACTTACCACCGCCACCCCCACCAACAACAACAATCATCCCA
ACGATGCGTGCAGGACCAATTGCAGATGGACAACTGGGAAGGCATGGGAG
CCGGCCTTGCGAGCGACCTCACGTCGTCGGCCACTGCTGCGATTAGCAAC
ATCCGAAGGTTCGTGCGAGCTCGAATTTCTATCTTCCCCCGAGGTAGTTT
CTTTCCTGTCCCACATCGGCATCAGCCAAGTAGCGCTGGCGGCCGGCGGC
TGTGCCACGCTTGCCGCTAGCTCGAATCGAGATAACCTAGTGCTGTACAT
GGAGAGCGCGCGCGACGTGATATGGGTGGAGAGTCCCGCCCAATTCGTGC
TATCCGCGTGGACCCTCGAAGCATGGGGGGGAGTTGTAGCGGAATATGTG
GGAAACCTAATTTATGAAACCTCACCGCATAATTCCTGCTGCCTGCGTAA
ACCGTCGAAGTGTGGCGGGAGTTGTGGGGGAACTTTGTGCGCATGCTGCT
GGACGCACCCACCACCTGGCGGTCTTTTGATGTTCACGAGGACAGACGTC
ATTTGTGTCACCCTTCCTTCTGATGTAGGAGATCATTCCTGTGATGGCGA
AGGGTGCATCGTCTTGAGGATGTAAATCGCGGGACTGGGTCTTGCTGACC
ACAGCAGTGGCGCCATCCTCAAAAGGTGCAAACAGCAGGAAATTTCCTGC
CGTACCTGCAGTCAAGGCGCACCGTTCTTGCTGCGTGCTGAGACGCGCAT
GGCGTTCGTGTACCCCTCTCCCCTCCTGTCCTCACGCCTCCACGTCTTTC
CGAACCACGAAACCGTTCTCCGAAACAACCCCCGCGAAACAGAACCGGCG
CGGGCGCCGTCCCGGGTGCTTCCGGAGGCGTGGGCGCCGGGGGAGGACTC
GGAAGCATCCCCGGGGGCGCCGCGGGGATGATGATGGGCGGCGGCGGCCC
CGGCAGGCCCGACGCGTCGTCATCCGCCATGATGATGGGCGGGGGCGCCG
CTGGGGGTGGTGGCGGCGGCGGGGTGGGGGGAAGCATGCCCAACAACAAG
TGCTTGGTGTATGTGAACACTCTAGAGGCGTGCTCGGGCTTCGCGGTGCG
GCTCAGGGAGATGCTGGAGCGGGACGCCTCGGCGGCGTTTGGGGTGGGGA
GGGGTGGCGGAGGTCCCGGGCACGACGCGGAGAGGGTCATGTCGTGCCTC
CAGGAGCTGGGGTCCACGAGGGCGCTGTTTTCCAGGGCCGCGAGCGACTG
CTTGGAAGAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13074:149..2711+

>mRNA_H-canaliculatus_F_contig13074.2541.1 ID=mRNA_H-canaliculatus_F_contig13074.2541.1|Name=mRNA_H-canaliculatus_F_contig13074.2541.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1656bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13074:149..2711+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGCGTCGGTGTCGAAGGCGATCGCGGTGGACGAGGTGGCGCCAGG
GGCCGCGGCGTCGTCTTGCGCCGAGGACGCCTTCTTCGTCGCCCAGCGTT
GCGCCAAGCGCGCCCTGGCGACGGGGCACGCGGGCGCCGCCTCTACGGTG
GTGAACCACGCCGGTAACACCCTCGGCGTCGACCTCCTGGAGGCGCTCGT
TCGAAAGATGGGAGCGTCGGTGTCGAAGGCGATCGCGGTGGACGAGGTGG
CGCCAGGGGCCGCGGCGTCGTCTTGCGCCGAGGACGCCTTCTTCGTCGCC
CAGCGTTGCGCCAAGCGCGCCCTGGCGACGGGGCACGCGGGCGCCGCCTC
TACGGTGGTGAACCACGCCGGTAACACCCTCGGCGTCGACCTCCTGGAGG
CGCTCGTTCGAAAGGTGAAGTCAACCCTCTCTACCCTGCCGGCCGGTGGG
GGGGGCACGTTGGATCTGACCATCAAGCAGCTGGGGCAGATAGACTTCAC
CGACTTGTCGTCCCTCAAGGTGAAGTCAACCCTCTCTACCCTGCCGGCCG
GTGGGGGGGGCACGTTGGATCTGACCATCAAGCAGCTGGGGCAGATAGAC
TTCACCGACTTGTCGTCCCTCAAGGACCAATTGCAGATGGACAACTGGGA
AGGCATGGGAGCCGGCCTTGCGAGCGACCTCACGTCGTCGGCCACTGCTG
CGATTAGCAACATCCGAAGGACCAATTGCAGATGGACAACTGGGAAGGCA
TGGGAGCCGGCCTTGCGAGCGACCTCACGTCGTCGGCCACTGCTGCGATT
AGCAACATCCGAAGAACCGGCGCGGGCGCCGTCCCGGGTGCTTCCGGAGG
CGTGGGCGCCGGGGGAGGACTCGGAAGCATCCCCGGGGGCGCCGCGGGGA
TGATGATGGGCGGCGGCGGCCCCGGCAGGCCCGACGCGTCGTCATCCGCC
ATGATGATGGGCGGGGGCGCCGCTGGGGGTGGTGGCGGCGGCGGGGTGGG
GGGAAGCATGCCCAACAACAAGTGCTTGGTGTATGTGAACACTCTAGAGG
CGTGCTCGGGCTTCGCGGTGCGGCTCAGGGAGATGCTGGAGCGGGACGCC
TCGGCGGCGTTTGGGGTGGGGAGGGGTGGCGGAGGTCCCGGGCACGACGC
GGAGAGGGTCATGTCGTGCCTCCAGGAGCTGGGGTCCACGAGGGCGCTGT
TTTCCAGGGCCGCGAGCGACTGCTTGGAAGAGGTGAACCGGCGCGGGCGC
CGTCCCGGGTGCTTCCGGAGGCGTGGGCGCCGGGGGAGGACTCGGAAGCA
TCCCCGGGGGCGCCGCGGGGATGATGATGGGCGGCGGCGGCCCCGGCAGG
CCCGACGCGTCGTCATCCGCCATGATGATGGGCGGGGGCGCCGCTGGGGG
TGGTGGCGGCGGCGGGGTGGGGGGAAGCATGCCCAACAACAAGTGCTTGG
TGTATGTGAACACTCTAGAGGCGTGCTCGGGCTTCGCGGTGCGGCTCAGG
GAGATGCTGGAGCGGGACGCCTCGGCGGCGTTTGGGGTGGGGAGGGGTGG
CGGAGGTCCCGGGCACGACGCGGAGAGGGTCATGTCGTGCCTCCAGGAGC
TGGGGTCCACGAGGGCGCTGTTTTCCAGGGCCGCGAGCGACTGCTTGGAA
GAGGTG
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