mRNA_H-canaliculatus_F_contig13073.2540.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13073.2540.1
Unique NamemRNA_H-canaliculatus_F_contig13073.2540.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13073.2540.1 vs. uniprot
Match: D7FI10_ECTSI (DNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI10_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 5.610e-103
Identity = 174/193 (90.16%), Postives = 178/193 (92.23%), Query Frame = 1 
Query:   13 AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMDWATCDMSTPAQEG----------GAEAGPKLPALPADGMDIGVLPRVIKTLVERRAVVKKMLKKEKDPSRKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLSENQLGLEVIYGDTDSVMINTHSTDLKQ 561
            AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTM+WA CDMSTPAQ G           A AGPKLP LPA+GMDIGVLPRVI+TLVERR+VVKKMLKKEKDPSRKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLSENQLGLEVIYGDTDSVMINTHSTDLKQ
Sbjct:  957 AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWAACDMSTPAQGGEDDMDEDDGAAASAGPKLPDLPAEGMDIGVLPRVIRTLVERRSVVKKMLKKEKDPSRKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLSENQLGLEVIYGDTDSVMINTHSTDLKQ 1149
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BLAST of mRNA_H-canaliculatus_F_contig13073.2540.1 vs. uniprot
Match: B8LEG9_THAPS (DNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEG9_THAPS)

HSP 1 Score: 257 bits (657), Expect = 2.010e-76
Identity = 130/185 (70.27%), Postives = 153/185 (82.70%), Query Frame = 1 
Query:    7 KAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMDWATCDMSTPAQEGGAEAGPKLPALPADGMDIGVLPRVIKTLVERRAVVKKMLKKEKDPSRKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLSENQLGLEVIYGDTDSVMINTHSTDLKQ 561
            KA Y+GGLVLEPKKGLYD +ILLLDFNSLYPSLIQEYNLCFTTM+W+  +     + G    G +LP LP +G+  GVLPRVIKTLV+RR  VKK LK EK+  +K+EL+IRQ+ALKLTANSMYGCLGFS SRFYA+PIAALVTA GRE+LQRTVDL++  +GLEVIYGDTDS+MINT  TD+ +
Sbjct:  498 KAKYSGGLVLEPKKGLYDSFILLLDFNSLYPSLIQEYNLCFTTMEWSKSNAPANVEGGEVPQGDQLPPLPDEGLKRGVLPRVIKTLVDRRRNVKKFLKTEKNAEKKEELNIRQQALKLTANSMYGCLGFSHSRFYAQPIAALVTAMGRETLQRTVDLAQTSIGLEVIYGDTDSIMINTRITDVNE 682
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BLAST of mRNA_H-canaliculatus_F_contig13073.2540.1 vs. uniprot
Match: A0A7S2L169_9STRA (DNA polymerase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L169_9STRA)

HSP 1 Score: 257 bits (656), Expect = 7.530e-76
Identity = 131/185 (70.81%), Postives = 155/185 (83.78%), Query Frame = 1 
Query:    7 KAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMDWATCDMSTPAQEGGAEAGPKLPALPADGMDIGVLPRVIKTLVERRAVVKKMLKKEKDPSRKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLSENQLGLEVIYGDTDSVMINTHSTDLKQ 561
            KA Y+GGLVLEPKKGLYD +ILLLDFNSLYPSLIQEYNLCFTTMDW+       A EG A  G +LP LP + +D GVLPRVIKTLV+RR  VK+++K EKD ++K+ELDIRQ ALKLTANSMYGCLGFS SRFYA+PIAAL+TA GRE+LQRTVDL++  +GL+VIYGDTDS+MINT  +D+ +
Sbjct:  911 KAKYSGGLVLEPKKGLYDSFILLLDFNSLYPSLIQEYNLCFTTMDWSKSVTPNNA-EGVAPQGDQLPPLPDESLDRGVLPRVIKTLVDRRRAVKRLVKTEKDQTKKEELDIRQLALKLTANSMYGCLGFSHSRFYAQPIAALITAMGRETLQRTVDLTQTTIGLDVIYGDTDSIMINTRISDVNE 1094
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BLAST of mRNA_H-canaliculatus_F_contig13073.2540.1 vs. uniprot
Match: A0A7S2FD72_9STRA (DNA-directed DNA polymerase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FD72_9STRA)

HSP 1 Score: 239 bits (610), Expect = 4.980e-75
Identity = 128/189 (67.72%), Postives = 153/189 (80.95%), Query Frame = 1 
Query:    1 RKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMDWATCDM-STPAQEGGAEAG-PKLPALPADGMDIGVLPRVIKTLVERRAVVKKMLKKEKDPSRKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLSENQLGLEVIYGDTDSVMINTHSTDLKQ 561
            R K  YAGGLVLEPKKGLY+ YILLLDF SLYPS+IQEYN+CFTTM+WA     ST   E   EAG   LP  P +  D GV+P+VI+T++ RR  VK++LK+E D  +KQ+LDIRQKALKLTANS+YGCLGFS SRF+A+PIAALVTA+GR+ LQRTVDL+EN +GLEVIYGDTDS+MI+T  TDLK+
Sbjct:    9 RGKPQYAGGLVLEPKKGLYETYILLLDFMSLYPSIIQEYNICFTTMEWAKYKTKSTNPAEDEEEAGFDGLPPDPENIDDKGVVPKVIRTIINRRVQVKQLLKQETDVGKKQQLDIRQKALKLTANSLYGCLGFSSSRFHAQPIAALVTAKGRQILQRTVDLAENNMGLEVIYGDTDSIMIDTKCTDLKE 197
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BLAST of mRNA_H-canaliculatus_F_contig13073.2540.1 vs. uniprot
Match: K0T5T4_THAOC (DNA polymerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T5T4_THAOC)

HSP 1 Score: 251 bits (641), Expect = 1.460e-74
Identity = 131/187 (70.05%), Postives = 155/187 (82.89%), Query Frame = 1 
Query:    1 RKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMDWATCDMSTPAQEGGAEAGPKLPALPADGMDIGVLPRVIKTLVERRAVVKKMLKKEKDPSRKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLSENQLGLEVIYGDTDSVMINTHSTDLKQ 561
            + K  YAGGLVL+PKKGLYD +ILLLDFNSLYPSLIQEYNLCFTTMDWA  D    A E GA+   +LP+LP + +D GVLPRVIK+LVERR  VKK +K EKD  +K+EL+IRQ ALKLTANSMYGCLGF  SRFYA+PIAALVTA GR++LQRTVD+++  +GL+VIYGDTDS+MINT  TDL++
Sbjct:  363 KSKKGYAGGLVLDPKKGLYDSFILLLDFNSLYPSLIQEYNLCFTTMDWAK-DKDI-ADEAGAQEN-QLPSLPDESLDRGVLPRVIKSLVERRRNVKKFMKSEKDADKKEELNIRQLALKLTANSMYGCLGFQNSRFYARPIAALVTAMGRQTLQRTVDITQTTIGLDVIYGDTDSIMINTRITDLEE 546
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13073.2540.1 vs. uniprot
Match: A0A482T3C7_9ARCH (DNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3C7_9ARCH)

HSP 1 Score: 251 bits (641), Expect = 3.120e-74
Identity = 140/220 (63.64%), Postives = 157/220 (71.36%), Query Frame = 1 
Query:    1 RKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMDW-------------ATCDMSTPAQ--------------------EGGAEAGPKLPALPADGMDIGVLPRVIKTLVERRAVVKKMLKKEKDPSRKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLSENQLGLEVIYGDTDSVMINTHSTDLKQ 561
            R KAAYAGGLVLEPKKGLYD YILLLDFNSLYPS+IQEYNLCFTT+DW             A  +   PA+                    EG    G  LP LP      GVLPRVIKTLV+RR  VK +LK E+DP ++Q LDIRQKALKLTANSMYGCLGFSFSRFYA+PIAALVTA GRE+LQRTVDL+ +Q+GL+VIYGDTDSVMINT+  DL+Q
Sbjct:  721 RAKAAYAGGLVLEPKKGLYDTYILLLDFNSLYPSIIQEYNLCFTTVDWTKYMPKEGALANDARGNAKGPAKGKTAKTEDEEEEVEGSDDEAEGDGGTGNNLPPLPESSSTPGVLPRVIKTLVDRRRQVKNLLKNERDPVQRQLLDIRQKALKLTANSMYGCLGFSFSRFYARPIAALVTAMGREALQRTVDLATHQMGLDVIYGDTDSVMINTNLVDLQQ 940
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BLAST of mRNA_H-canaliculatus_F_contig13073.2540.1 vs. uniprot
Match: A0A4D9CVK1_9STRA (DNA polymerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVK1_9STRA)

HSP 1 Score: 248 bits (634), Expect = 6.960e-73
Identity = 132/201 (65.67%), Postives = 157/201 (78.11%), Query Frame = 1 
Query:    1 RKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMDWATC--------------------DMSTPAQEGGAEAG-PKLPALPADGMDIGVLPRVIKTLVERRAVVKKMLKKEKDPSRKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLSENQLGLEVIYGDTDSVMINT 540
            R+K AYAGGLVLEPKKGLYD YILLLDFNSLYPS+IQEYNLCFTT++W+                      D+   A E  A AG  +LP LP   +D G+LPRVIKTLV+RR+ VKK+LK E+D ++K++LDIRQKALKLTANSMYGCLGFS SRF+A+PIAALVTA GRE+LQRTVD+++NQL L+VIYGDTDS+MINT
Sbjct:  942 RQKPAYAGGLVLEPKKGLYDSYILLLDFNSLYPSIIQEYNLCFTTINWSAFARPSSTAGGDPLAKTAGDEDDVGLGADEDEAAAGGAQLPPLPDTALDQGILPRVIKTLVDRRSSVKKLLKAERDAAKKEQLDIRQKALKLTANSMYGCLGFSHSRFFARPIAALVTAMGRETLQRTVDVAQNQLSLDVIYGDTDSIMINT 1142
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13073.2540.1 vs. uniprot
Match: A0A7S4IIV6_9STRA (DNA polymerase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IIV6_9STRA)

HSP 1 Score: 247 bits (630), Expect = 2.340e-72
Identity = 132/204 (64.71%), Postives = 154/204 (75.49%), Query Frame = 1 
Query:    1 RKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMD-WATCD---MSTPAQEGGA--------------------EAGPKLPALPADGMDIGVLPRVIKTLVERRAVVKKMLKKEKDPSRKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLSENQLGLEVIYGDTDSVMINT 540
            R KA Y+GGLVLEPKKGLYD YILLLDFNSLYPS+IQEYNLCFTT+D W+      ++    +GG                      AG  LP++P    D+GVLPRVI+TLVERR  VKK+LK E+D  +K+ELDIRQKALKLTANSMYGCLGFSFSRFYA+PIAALVTA GRE+LQ+TVD++E  +GL+VIYGDTDSVMINT
Sbjct:  771 RAKAKYSGGLVLEPKKGLYDSYILLLDFNSLYPSIIQEYNLCFTTLDDWSGLQAKALAASTPKGGTPSGXXXXXXXXXXXXVALIENAGDALPSIPDPSKDVGVLPRVIRTLVERRKAVKKLLKNERDADKKEELDIRQKALKLTANSMYGCLGFSFSRFYAQPIAALVTAMGRETLQKTVDIAEKSVGLDVIYGDTDSVMINT 974
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13073.2540.1 vs. uniprot
Match: B7S420_PHATC (DNA polymerase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7S420_PHATC)

HSP 1 Score: 239 bits (609), Expect = 9.340e-70
Identity = 127/182 (69.78%), Postives = 145/182 (79.67%), Query Frame = 1 
Query:    7 KAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMDWATCDMSTPAQEGGAEAGPKLPALPADGMDIGVLPRVIKTLVERRAVVKKMLKKEKDPSRKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLSENQLGLEVIYGDTDSVMINTHSTD 552
            KA YAGGLVLEPKKGLYD YILLLDFNSLYPS+IQEYNLCFTT+DWA           G E    LP LP    D GVLPRVI++LVERR  VKK+LK E +  RK+ELDIRQKALKLTANSMYGCLGFS SRF+A+PIAAL+T+ GRE LQRTVD+++ ++GL+VIYGDTDS+MINT   D
Sbjct:  502 KAKYAGGLVLEPKKGLYDSYILLLDFNSLYPSIIQEYNLCFTTLDWAGL--------AGTEDN-VLPDLPDTEADRGVLPRVIQSLVERRRTVKKLLKSETNAVRKEELDIRQKALKLTANSMYGCLGFSNSRFFAQPIAALITSMGREILQRTVDIAQQKVGLDVIYGDTDSIMINTRIND 674
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13073.2540.1 vs. uniprot
Match: A0A7S1UP17_9STRA (DNA polymerase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UP17_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.970e-69
Identity = 122/183 (66.67%), Postives = 146/183 (79.78%), Query Frame = 1 
Query:    7 KAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMD-WATCDMSTPAQEGGAEAGPKLPALPADGMDIGVLPRVIKTLVERRAVVKKMLKKEKDPSRKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLSENQLGLEVIYGDTDSVMINTHSTD 552
            KA Y+GGLVLEPKKG YD +ILLLDFNSLYPS+IQEYNLCFTTMD WA  D +            +LP LP +  + GVLPRVIK+LV+RR VVK++LK E +  ++Q LDIRQKALKLTANSMYGCLGFS SRFYA+PIAALVTA GRE+LQ++VD+++  +GL VIYGDTDS+MI+T  TD
Sbjct:  511 KAKYSGGLVLEPKKGYYDSFILLLDFNSLYPSIIQEYNLCFTTMDDWA--DHANNNAXXXXXXSSELPELPEESKERGVLPRVIKSLVDRRRVVKRLLKNETNDDKRQNLDIRQKALKLTANSMYGCLGFSHSRFYAQPIAALVTAMGRETLQKSVDIAQESVGLSVIYGDTDSIMIDTRITD 691
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13073.2540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI10_ECTSI5.610e-10390.16DNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
B8LEG9_THAPS2.010e-7670.27DNA polymerase (Fragment) n=1 Tax=Thalassiosira ps... [more]
A0A7S2L169_9STRA7.530e-7670.81DNA polymerase n=1 Tax=Skeletonema marinoi TaxID=2... [more]
A0A7S2FD72_9STRA4.980e-7567.72DNA-directed DNA polymerase (Fragment) n=1 Tax=Dic... [more]
K0T5T4_THAOC1.460e-7470.05DNA polymerase n=1 Tax=Thalassiosira oceanica TaxI... [more]
A0A482T3C7_9ARCH3.120e-7463.64DNA polymerase n=1 Tax=archaeon TaxID=1906665 RepI... [more]
A0A4D9CVK1_9STRA6.960e-7365.67DNA polymerase n=1 Tax=Nannochloropsis salina CCMP... [more]
A0A7S4IIV6_9STRA2.340e-7264.71DNA polymerase n=1 Tax=Odontella aurita TaxID=2655... [more]
B7S420_PHATC9.340e-7069.78DNA polymerase (Fragment) n=1 Tax=Phaeodactylum tr... [more]
A0A7S1UP17_9STRA1.970e-6966.67DNA polymerase (Fragment) n=1 Tax=Grammatophora oc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13073contigH-canaliculatus_F_contig13073:464..2752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.4
Seed ortholog evalue4.2e-90
Seed eggNOG ortholog2880.D7FI10
Preferred namePOLA1
KEGG rclassRC02795
KEGG koko:K02320
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG ModuleM00261
GOsGO:0000003,GO:0000082,GO:0000083,GO:0000166,GO:0000228,GO:0000278,GO:0000428,GO:0000723,GO:0000726,GO:0000731,GO:0000734,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005657,GO:0005658,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006272,GO:0006273,GO:0006278,GO:0006279,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009653,GO:0009889,GO:0009965,GO:0009987,GO:0010016,GO:0010468,GO:0010556,GO:0012505,GO:0016043,GO:0016070,GO:0016363,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0018130,GO:0019103,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022413,GO:0022414,GO:0022616,GO:0030154,GO:0030880,GO:0030894,GO:0031323,GO:0031326,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032200,GO:0032201,GO:0032501,GO:0032502,GO:0032505,GO:0032774,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034061,GO:0034062,GO:0034399,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035861,GO:0036094,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045165,GO:0046483,GO:0046982,GO:0046983,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051321,GO:0051716,GO:0055029,GO:0060249,GO:0060255,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097747,GO:0098687,GO:0099402,GO:0140097,GO:0140098,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902292,GO:1902295,GO:1902315,GO:1902318,GO:1902494,GO:1902969,GO:1902975,GO:1902981,GO:1903046,GO:1903047,GO:1903506,GO:1905392,GO:1990234,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.leading strand elongation
EggNOG OGsCOG0417@1,KOG0970@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Hectar predicted targeting categoryother localisation
Exons4
Model size567
Cds size567
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13073.2540.1prot_H-canaliculatus_F_contig13073.2540.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13073 464..2752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929041.98841-CDS-H-canaliculatus_F_contig13073:463..6291622929041.98841-CDS-H-canaliculatus_F_contig13073:463..629Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13073 464..629 -
1696845658.184175-CDS-H-canaliculatus_F_contig13073:463..6291696845658.184175-CDS-H-canaliculatus_F_contig13073:463..629Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13073 464..629 -
1622929042.0024436-CDS-H-canaliculatus_F_contig13073:1193..12851622929042.0024436-CDS-H-canaliculatus_F_contig13073:1193..1285Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13073 1194..1285 -
1696845658.1957881-CDS-H-canaliculatus_F_contig13073:1193..12851696845658.1957881-CDS-H-canaliculatus_F_contig13073:1193..1285Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13073 1194..1285 -
1622929042.022716-CDS-H-canaliculatus_F_contig13073:1709..18441622929042.022716-CDS-H-canaliculatus_F_contig13073:1709..1844Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13073 1710..1844 -
1696845658.2035983-CDS-H-canaliculatus_F_contig13073:1709..18441696845658.2035983-CDS-H-canaliculatus_F_contig13073:1709..1844Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13073 1710..1844 -
1622929042.0377843-CDS-H-canaliculatus_F_contig13073:2578..27521622929042.0377843-CDS-H-canaliculatus_F_contig13073:2578..2752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13073 2579..2752 -
1696845658.2119231-CDS-H-canaliculatus_F_contig13073:2578..27521696845658.2119231-CDS-H-canaliculatus_F_contig13073:2578..2752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13073 2579..2752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13073.2540.1

>prot_H-canaliculatus_F_contig13073.2540.1 ID=prot_H-canaliculatus_F_contig13073.2540.1|Name=mRNA_H-canaliculatus_F_contig13073.2540.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=189bp
RKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMDWAT
CDMSTPAQEGGAEAGPKLPALPADGMDIGVLPRVIKTLVERRAVVKKMLK
KEKDPSRKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGR
ESLQRTVDLSENQLGLEVIYGDTDSVMINTHSTDLKQA*
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mRNA from alignment at H-canaliculatus_F_contig13073:464..2752-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13073.2540.1 ID=mRNA_H-canaliculatus_F_contig13073.2540.1|Name=mRNA_H-canaliculatus_F_contig13073.2540.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2289bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13073:464..2752- (Hapterophycus canaliculatus Oshoro5f female)
CGTAAGAAGGCGGCCTACGCGGGCGGGCTTGTCCTGGAGCCCAAGAAGGG
CCTGTACGACGAGTACATCCTGCTCCTGGACTTCAACAGCCTCTACCCCT
CCCTCATCCAGGAGTACAACCTCTGCTTCACCACCATGGACTGGGCGACG
TGCGACATGTCTACCCCTGCGCAGGTGCGCAATCGGCGGAGTACGGGGGG
AGGGGGAGGGAGCGGGTACTGGCGCCTAACCAGATATTTGTTGATGGTGG
CGGGCAAGGGCTGTGTCGTCGTCGTTGTCTTCGTTACCGTTACCGTTCTG
CGTGAGGAAGACTGTGTGCGAGGATCGCGTTTTTTTCTCGTGGCTAGCCG
ACGCGTGTCTCTCGCGCTCTTTCCCGTCGCGGGAGCGACCGGGGGGCGAG
CATGGGAGGCGTTTTTATAAAACAAGTCAACAACACCGAAGGAATACCCA
CCTAAGGCACTGTCCATCTCAAGGGGCTTTTGTTAATTCCATTCAGTGAG
GGTTCCATTCGAGTGACAGGATGAAACTATGTAGCCGTAGGCCAGTTGTG
GACAAAAAAAACGTGAAAAGTTATGGTCAAAGACGTGAAAAACGTTTGAT
CAAGGCGCCGGCGTGGGACACCGCGTATCCTGCTAGCTGTGGCGGTGGTG
ACGACTGGCGACAGCCCTCGATCGCCTGCATCGTGGGTACGCGTGCAGCA
ACCGAGAACACCCCGCAACCCACGACGTCGTTTTGTGTGCGCGATGCCCC
CCCCCAAGCACCCCGCTCATCTCCCGGCTCCCTGTTCTCTCCTGCTCTCT
ACTCGGCGGCTCGCCTCACCCCCGCCTTGTCGTCCCATGGCGCCGCCGGC
CCTCACCCTTCCCGCAACCTTTCGCACCCCTCAGGGAGGAGCCGATGCCA
TGGACGAGGAAGGCGGCGCGGAGGCGGGGCCGAAGCTCCCCGCCCTTCCC
GCGGACGGCATGGACATCGGGGTGCTTCCCAGGGTGATCAAAACCCTCGT
GGAGCGGCGCGCCGTGGTGAAGAAGATGCTCAAGAAGGAGAAGGTGCGGG
CCGTTGTGGAAGAGTGCGGGGGTTCCCTCCGCCCGGGGGCCATCGTTTCG
GTCTTTTCCTTTTGCTCTCCGGTTGGTGTCGTTGGAGATGAAGACGCGAG
CACGCCCGGCCGTAGGAGAAGGATGGCGCCCGGGGCGGACGCCAGAGGAG
CGCTTGATGGGTCACTCGAAGGGTGGGAGTTCGTGCACGGTTGTCCCCCC
CCCCAGACTATTCGCCAGCTTGGGGTCAGGGTGCTGTGTCCCTACGCCTC
CATCTCTCCCACGTTGAGGAGCCGGATTCTTGCCGTCCGTCCGCTCCCTT
CGTCATGTTCGGTAGAAAATCGTTTTTTTTTGTCGCCTCCGCCCCCCGCC
CGTCTCCTCGCCCTCTCCACCCCGTCACCCCGATCCCATCCCCCGCGCTC
GTCATCGCCTCGGCCAGGACCCCTCGCGCAAGCAGGAGCTGGACATCCGG
CAGAAGGCCTTGAAGCTCACGGCCAACTCCATGTACGGCTGCCTCGGCTT
CTCCTTCAGGTGAGGACGGCAAAATCAAGCAGACAAGGGTGCGGTGTCAG
CGGGAAATGGCGTACAAAAGTGACCATGAGACAAGCAGTGTACCTGTGCT
GCGCTCTTCTTGACGCAACCGGTCGATTTACTGCGACCGGCATGAGACCT
CTGCGGGACCCCCACAGTATTTTCGAGAAACTCAGGCGGGATACTGAAAA
TTGGAGGCTGTTTCGGCTGTGTGAGCTTTCTGTTGTCGCTGCAGGTGCCC
TCCGCGTGCTTTCTAGTCGACTTGGTCTGCTTGTTAATTTTGATCGTCCT
TTTTTTGTACGGTCCCGTTGGGCTGGTTTGGACGGCTGTGGGTAACGAAG
GCGGCGGTAAGCCTAGTAACTTGAATACTGAGGTACGAACAGCGGTCGAC
GCGGCTGAACACACACACACACACACACACACACACACACGCACACACAC
ACACACACACACCGAACTGCACGTCTTCGCTTTATGTCGGTGTCGCGCTC
CGTCCTTTCCTTCTCTTTCCTTCCTTTCCTTCTCTTCCCTTGCTTCTTCG
TTTCCTGTGCTGGGCTGCTTCAGTCGATTCTACGCCAAGCCCATTGCGGC
CTTGGTGACGGCTCAGGGGCGAGAGAGCCTGCAGCGCACGGTAGACCTGT
CGGAGAACCAGCTCGGACTTGAAGTCATCTACGGAGACACCGACAGCGTC
ATGATCAACACGCACAGCACCGATCTCAAACAGGCATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13073:464..2752-

>mRNA_H-canaliculatus_F_contig13073.2540.1 ID=mRNA_H-canaliculatus_F_contig13073.2540.1|Name=mRNA_H-canaliculatus_F_contig13073.2540.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1134bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13073:464..2752- (Hapterophycus canaliculatus Oshoro5f female)
CGTAAGAAGGCGGCCTACGCGGGCGGGCTTGTCCTGGAGCCCAAGAAGGG
CCTGTACGACGAGTACATCCTGCTCCTGGACTTCAACAGCCTCTACCCCT
CCCTCATCCAGGAGTACAACCTCTGCTTCACCACCATGGACTGGGCGACG
TGCGACATGTCTACCCCTGCGCAGCGTAAGAAGGCGGCCTACGCGGGCGG
GCTTGTCCTGGAGCCCAAGAAGGGCCTGTACGACGAGTACATCCTGCTCC
TGGACTTCAACAGCCTCTACCCCTCCCTCATCCAGGAGTACAACCTCTGC
TTCACCACCATGGACTGGGCGACGTGCGACATGTCTACCCCTGCGCAGGA
AGGCGGCGCGGAGGCGGGGCCGAAGCTCCCCGCCCTTCCCGCGGACGGCA
TGGACATCGGGGTGCTTCCCAGGGTGATCAAAACCCTCGTGGAGCGGCGC
GCCGTGGTGAAGAAGATGCTCAAGAAGGAGAAGGAAGGCGGCGCGGAGGC
GGGGCCGAAGCTCCCCGCCCTTCCCGCGGACGGCATGGACATCGGGGTGC
TTCCCAGGGTGATCAAAACCCTCGTGGAGCGGCGCGCCGTGGTGAAGAAG
ATGCTCAAGAAGGAGAAGGACCCCTCGCGCAAGCAGGAGCTGGACATCCG
GCAGAAGGCCTTGAAGCTCACGGCCAACTCCATGTACGGCTGCCTCGGCT
TCTCCTTCAGGACCCCTCGCGCAAGCAGGAGCTGGACATCCGGCAGAAGG
CCTTGAAGCTCACGGCCAACTCCATGTACGGCTGCCTCGGCTTCTCCTTC
AGTCGATTCTACGCCAAGCCCATTGCGGCCTTGGTGACGGCTCAGGGGCG
AGAGAGCCTGCAGCGCACGGTAGACCTGTCGGAGAACCAGCTCGGACTTG
AAGTCATCTACGGAGACACCGACAGCGTCATGATCAACACGCACAGCACC
GATCTCAAACAGGCATGATCGATTCTACGCCAAGCCCATTGCGGCCTTGG
TGACGGCTCAGGGGCGAGAGAGCCTGCAGCGCACGGTAGACCTGTCGGAG
AACCAGCTCGGACTTGAAGTCATCTACGGAGACACCGACAGCGTCATGAT
CAACACGCACAGCACCGATCTCAAACAGGCATGA
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