mRNA_H-canaliculatus_F_contig1307.2539.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1307.2539.1
Unique NamemRNA_H-canaliculatus_F_contig1307.2539.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1307.2539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1307contigH-canaliculatus_F_contig1307:17517..18420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size170
Cds size162
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1307.2539.1prot_H-canaliculatus_F_contig1307.2539.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1307 17517..18413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929041.9042935-CDS-H-canaliculatus_F_contig1307:17516..175991622929041.9042935-CDS-H-canaliculatus_F_contig1307:17516..17599Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1307 17517..17599 -
1696845658.14563-CDS-H-canaliculatus_F_contig1307:17516..175991696845658.14563-CDS-H-canaliculatus_F_contig1307:17516..17599Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1307 17517..17599 -
1622929041.9211264-CDS-H-canaliculatus_F_contig1307:18334..184131622929041.9211264-CDS-H-canaliculatus_F_contig1307:18334..18413Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1307 18335..18413 -
1696845658.1622171-CDS-H-canaliculatus_F_contig1307:18334..184131696845658.1622171-CDS-H-canaliculatus_F_contig1307:18334..18413Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1307 18335..18413 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929041.940739-UTR-H-canaliculatus_F_contig1307:18413..184201622929041.940739-UTR-H-canaliculatus_F_contig1307:18413..18420Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1307 18414..18420 -
1696845658.1733565-UTR-H-canaliculatus_F_contig1307:18413..184201696845658.1733565-UTR-H-canaliculatus_F_contig1307:18413..18420Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1307 18414..18420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1307.2539.1

>prot_H-canaliculatus_F_contig1307.2539.1 ID=prot_H-canaliculatus_F_contig1307.2539.1|Name=mRNA_H-canaliculatus_F_contig1307.2539.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=54bp
MAGAPTLLSAMPTAIPHGANPGDAQPGAIPHGTTTTTTTTTSSSSGASFA
GLCQ
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mRNA from alignment at H-canaliculatus_F_contig1307:17517..18420-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1307.2539.1 ID=mRNA_H-canaliculatus_F_contig1307.2539.1|Name=mRNA_H-canaliculatus_F_contig1307.2539.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=904bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1307:17517..18420- (Hapterophycus canaliculatus Oshoro5f female)
ACCAGGAATGGCCGGGGCACCAACTTTACTCTCAGCAATGCCAACAGCCA
TCCCTCATGGAGCAAATCCCGGTGACGCCCAACCAGGTCAGCGAGCTCTG
AGTCCGTCTAGCATGACGTTGTGATAAAATAATGGCGATCAACCGAGACA
GATTTGTTCTGCAGCTTGCCGTCCGCTTTGCGCGGGACCTCATGTTGTGT
GCATTGTTTACCAAGGGCTTCGTACTGGAAAAAAGTGGAAGGAAACAGGA
AAACGAACTTTTCTTCGTGTTGAGAACTTGAGACGTGTCGGCGTTGGCTG
ACGGAATGGGCGTCTTCAAGCCGGGACACGCACTGCTTTTGGCATCTATT
GACACAGCGTCAATTGCCGGTGGTTGTATAGTTTGTGGCCAAAACACATC
GCGCCATCCGTGCGTAATTTGGGACAAAAACGGGTCGATGCATCATCGTG
AGATTGTCAGCGATATGTCAGCGATATTTTTCGACTTCCCCACTTTGGTG
TCTTGGGGATTATTGATCTTCCGCTCATCGTGGGCCGAGTCAGCTTAGAG
TAGTTTCACTTCCAGTGTCTGACGTTCCCGTTGGCATCCGATTCGAATTT
CATCGAGCCGAACAGAGTATTGCTTGCAGCAGGGAGTGATGTCCTATTTG
GGTCGAGGTCGCTGAACGAAACCGAGAACAAGACGCTGATACGTTGCCCA
AGCCGGAGAAGGGCAACCACCGTATTGCGCGAAGACCCGTACGATGCATG
ACGCACACCGCTCCTCCAAACGACACACATCACCCGGTCACCACTTAATT
ATTTGAACATCATCTGTCCAGGTGCGATACCACATGGTACAACCACCACA
ACCACTACCACCACTAGCAGCAGTAGCGGCGCGAGCTTCGCAGGCCTCTG
CCAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1307:17517..18420-

>mRNA_H-canaliculatus_F_contig1307.2539.1 ID=mRNA_H-canaliculatus_F_contig1307.2539.1|Name=mRNA_H-canaliculatus_F_contig1307.2539.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=324bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1307:17517..18420- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCGGGGCACCAACTTTACTCTCAGCAATGCCAACAGCCATCCCTCA
TGGAGCAAATCCCGGTGACGCCCAACCAGATGGCCGGGGCACCAACTTTA
CTCTCAGCAATGCCAACAGCCATCCCTCATGGAGCAAATCCCGGTGACGC
CCAACCAGGTGCGATACCACATGGTACAACCACCACAACCACTACCACCA
CTAGCAGCAGTAGCGGCGCGAGCTTCGCAGGCCTCTGCCAAGTGCGATAC
CACATGGTACAACCACCACAACCACTACCACCACTAGCAGCAGTAGCGGC
GCGAGCTTCGCAGGCCTCTGCCAA
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