mRNA_H-canaliculatus_F_contig13067.2538.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13067.2538.1
Unique NamemRNA_H-canaliculatus_F_contig13067.2538.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13067.2538.1 vs. uniprot
Match: D8LQZ6_ECTSI (Casein kinase (Serine/threonine/tyrosine protein kinase) (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQZ6_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 3.500e-17
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    4 YASLGAHEERDQSRKDDLESLLYVFLDLYTGKLPWAE 114
            YASLGAHEERDQSRKDDLESLLYVFLDLYTGKLPWAE
Sbjct:  239 YASLGAHEERDQSRKDDLESLLYVFLDLYTGKLPWAE 275
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BLAST of mRNA_H-canaliculatus_F_contig13067.2538.1 vs. uniprot
Match: A0A6H5L231_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L231_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 4.450e-17
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    4 YASLGAHEERDQSRKDDLESLLYVFLDLYTGKLPWAE 114
            YASLGAHEERDQSRKDDLESLLYVFLDLYTGKLPWAE
Sbjct:  194 YASLGAHEERDQSRKDDLESLLYVFLDLYTGKLPWAE 230
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BLAST of mRNA_H-canaliculatus_F_contig13067.2538.1 vs. uniprot
Match: A0A5J4VL54_9EUKA (Putative Tau-tubulin kinase 1 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4VL54_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 1.550e-9
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 RYASLGAHEERDQSRKDDLESLLYVFLDLYTGKLPWA 111
            RYAS+ +H +R+  R DDL SL+Y+F++ YTGKLPWA
Sbjct:   86 RYASINSHRKRELGRNDDLMSLIYIFVEFYTGKLPWA 122
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BLAST of mRNA_H-canaliculatus_F_contig13067.2538.1 vs. uniprot
Match: A0A6C0DZE0_9ZZZZ (Protein kinase domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DZE0_9ZZZZ)

HSP 1 Score: 58.5 bits (140), Expect = 5.420e-9
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 RYASLGAHEERDQSRKDDLESLLYVFLDLYTGKLPWAE 114
            RYAS+ AHE  +QSRKDDLESL Y+F+ LY GKLPW +
Sbjct:  194 RYASIAAHECVEQSRKDDLESLGYIFVYLYKGKLPWQQ 231
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BLAST of mRNA_H-canaliculatus_F_contig13067.2538.1 vs. uniprot
Match: A0A5J4VDI7_9EUKA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4VDI7_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 8.080e-9
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 RYASLGAHEERDQSRKDDLESLLYVFLDLYTGKLPWA 111
            RYAS+ +H +R+  R DDL SL+Y+F++ YTGKLPW 
Sbjct:   77 RYASINSHRKRELGRNDDLMSLIYIFVEFYTGKLPWV 113
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13067.2538.1 vs. uniprot
Match: A0A1M2VJ24_TRAPU (Casein kinase I isoform alpha n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VJ24_TRAPU)

HSP 1 Score: 57.4 bits (137), Expect = 1.550e-8
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 RYASLGAHEERDQSRKDDLESLLYVFLDLYTGKLPWAE 114
            RYAS+ AH  +  SR+DD+ESLLYV LDLY G LPW E
Sbjct:  238 RYASVAAHMRQAVSRRDDIESLLYVLLDLYVGDLPWPE 275
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BLAST of mRNA_H-canaliculatus_F_contig13067.2538.1 vs. uniprot
Match: A0A5J4WAA4_9EUKA (Putative tau-tubulin kinase 2 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WAA4_9EUKA)

HSP 1 Score: 54.3 bits (129), Expect = 2.310e-8
Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 RYASLGAHEERDQSRKDDLESLLYVFLDLYTGKLPWA 111
            RYAS+ +H +R+  R+DDL SL+Y+F++ YTG LPW 
Sbjct:   20 RYASVNSHRKRELGRQDDLMSLIYIFVEFYTGSLPWV 56
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13067.2538.1 vs. uniprot
Match: A0A5J4WF99_9EUKA (Uncharacterized protein n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WF99_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 2.760e-8
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 RYASLGAHEERDQSRKDDLESLLYVFLDLYTGKLPWA 111
            RYAS+ AH +R+  R+DDL SL+Y+F++ YTG LPW 
Sbjct:   20 RYASVNAHRKRELGRQDDLMSLIYIFVEFYTGNLPWV 56
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13067.2538.1 vs. uniprot
Match: A0A5J4UGY2_9EUKA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4UGY2_9EUKA)

HSP 1 Score: 54.3 bits (129), Expect = 3.750e-8
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 RYASLGAHEERDQSRKDDLESLLYVFLDLYTGKLPWA 111
            RYAS+ +H +R+  R+DDL SL+Y+F++ YTG++PW 
Sbjct:   88 RYASINSHRKRELGRQDDLMSLIYIFVEFYTGRVPWG 124
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13067.2538.1 vs. uniprot
Match: A0A5J4VV29_9EUKA (Putative tau-tubulin kinase 2 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4VV29_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 4.690e-8
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 RYASLGAHEERDQSRKDDLESLLYVFLDLYTGKLPWA 111
            RYAS+ AH +R+  R DDL SL+Y+F++ YTG LPW 
Sbjct:   20 RYASINAHRKRELGRNDDLMSLIYIFVEFYTGSLPWV 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13067.2538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQZ6_ECTSI3.500e-17100.00Casein kinase (Serine/threonine/tyrosine protein k... [more]
A0A6H5L231_9PHAE4.450e-17100.00Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A5J4VL54_9EUKA1.550e-959.46Putative Tau-tubulin kinase 1 n=1 Tax=Streblomasti... [more]
A0A6C0DZE0_9ZZZZ5.420e-968.42Protein kinase domain-containing protein n=1 Tax=v... [more]
A0A5J4VDI7_9EUKA8.080e-956.76Protein kinase domain-containing protein (Fragment... [more]
A0A1M2VJ24_TRAPU1.550e-865.79Casein kinase I isoform alpha n=1 Tax=Trametes pub... [more]
A0A5J4WAA4_9EUKA2.310e-854.05Putative tau-tubulin kinase 2 n=1 Tax=Streblomasti... [more]
A0A5J4WF99_9EUKA2.760e-856.76Uncharacterized protein n=1 Tax=Streblomastix stri... [more]
A0A5J4UGY2_9EUKA3.750e-851.35Protein kinase domain-containing protein (Fragment... [more]
A0A5J4VV29_9EUKA4.690e-856.76Putative tau-tubulin kinase 2 n=1 Tax=Streblomasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13067contigH-canaliculatus_F_contig13067:2884..2997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929041.8589125-CDS-H-canaliculatus_F_contig13067:2883..29971622929041.8589125-CDS-H-canaliculatus_F_contig13067:2883..2997Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13067 2884..2997 -
1696845658.1338782-CDS-H-canaliculatus_F_contig13067:2883..29971696845658.1338782-CDS-H-canaliculatus_F_contig13067:2883..2997Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13067 2884..2997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13067.2538.1prot_H-canaliculatus_F_contig13067.2538.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13067 2884..2997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13067.2538.1

>prot_H-canaliculatus_F_contig13067.2538.1 ID=prot_H-canaliculatus_F_contig13067.2538.1|Name=mRNA_H-canaliculatus_F_contig13067.2538.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=38bp
RYASLGAHEERDQSRKDDLESLLYVFLDLYTGKLPWAE
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mRNA from alignment at H-canaliculatus_F_contig13067:2884..2997-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13067.2538.1 ID=mRNA_H-canaliculatus_F_contig13067.2538.1|Name=mRNA_H-canaliculatus_F_contig13067.2538.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=114bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13067:2884..2997- (Hapterophycus canaliculatus Oshoro5f female)
AGGTACGCCTCCCTCGGGGCCCACGAAGAGAGGGACCAGAGCCGCAAGGA
CGACCTGGAGAGCCTCCTCTACGTCTTCCTCGACCTCTACACCGGAAAGC
TGCCCTGGGCGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13067:2884..2997-

>mRNA_H-canaliculatus_F_contig13067.2538.1 ID=mRNA_H-canaliculatus_F_contig13067.2538.1|Name=mRNA_H-canaliculatus_F_contig13067.2538.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=228bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13067:2884..2997- (Hapterophycus canaliculatus Oshoro5f female)
AGGTACGCCTCCCTCGGGGCCCACGAAGAGAGGGACCAGAGCCGCAAGGA
CGACCTGGAGAGCCTCCTCTACGTCTTCCTCGACCTCTACACCGGAAAGC
TGCCCTGGGCGGAGAGGTACGCCTCCCTCGGGGCCCACGAAGAGAGGGAC
CAGAGCCGCAAGGACGACCTGGAGAGCCTCCTCTACGTCTTCCTCGACCT
CTACACCGGAAAGCTGCCCTGGGCGGAG
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