mRNA_H-canaliculatus_F_contig13066.2537.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13066.2537.1
Unique NamemRNA_H-canaliculatus_F_contig13066.2537.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13066.2537.1 vs. uniprot
Match: A0A6H5JX36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX36_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.680e-19
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 DRQALVALYHATDGTSWNYSSNWDMDVPIAEWHGVEVNDQGRVVGLRLDHNNLQG 165
            DR ALVALY+AT+G  W+ + NW+   P+++WHGV VNDQGRVV L L  NNLQG
Sbjct:    5 DRDALVALYNATEGGRWSTNRNWNTGAPLSQWHGVHVNDQGRVVALELAENNLQG 59
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BLAST of mRNA_H-canaliculatus_F_contig13066.2537.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 7.750e-18
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 DRQALVALYHATDGTSWNYSSNWDMDVPIAEWHGVEVNDQGRVVGLRLDHNNLQG 165
            DR ALVALY AT G +W  S NWD D  +  WHGV+VNDQGRVV L+L  NNL+G
Sbjct:    5 DRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEG 59
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BLAST of mRNA_H-canaliculatus_F_contig13066.2537.1 vs. uniprot
Match: A0A6H5K3C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 9.790e-18
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 DRQALVALYHATDGTSWNYSSNWDMDVPIAEWHGVEVNDQGRVVGLRLDHNNLQG 165
            DR ALVA+Y AT G  W+ S NWD D  +  WHGV VNDQGRVV L L  NNL+G
Sbjct:    5 DRDALVAMYRATGGEKWSTSQNWDTDSDLKTWHGVNVNDQGRVVKLELGFNNLEG 59
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BLAST of mRNA_H-canaliculatus_F_contig13066.2537.1 vs. uniprot
Match: A0A6H5K8T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T5_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 3.350e-17
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 DRQALVALYHATDGTSWNYSSNWDMDVPIAEWHGVEVNDQGRVVGLRLDHNNLQG 165
            DR ALVALY ATDG +W    NW+ D+P+  W GVE NDQGRVVGL L  N L G
Sbjct:  112 DRDALVALYDATDGANWKSKQNWNTDLPLGRWRGVEANDQGRVVGLDLPDNKLHG 166
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BLAST of mRNA_H-canaliculatus_F_contig13066.2537.1 vs. uniprot
Match: D7FXI0_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI0_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.730e-16
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 DRQALVALYHATDGTSWNYSSNWDMDVPIAEWHGVEVNDQGRVVGLRLDHNNLQG 165
            DR+AL+AL+ +T G  W    NWD D  +  WHGV+VNDQGRVV L LD NNLQG
Sbjct:    5 DREALIALFRSTGGAGWMRRDNWDTDAVLGTWHGVKVNDQGRVVMLSLDQNNLQG 59
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BLAST of mRNA_H-canaliculatus_F_contig13066.2537.1 vs. uniprot
Match: F3PUA9_9BACE (Leucine Rich repeat-containing domain protein n=2 Tax=Bacteroides fluxus TaxID=626930 RepID=F3PUA9_9BACE)

HSP 1 Score: 80.1 bits (196), Expect = 3.300e-16
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 DRQALVALYHATDGTSWNYSSNWDMDVPIAEWHGVEVNDQGRVVGLRLDHNNLQG 165
            DRQAL+ LY+ATDG +W  ++NW  D P+ EWHGV   + GRV+ LRLDHNNL+G
Sbjct:  284 DRQALIDLYNATDGDNWTKNTNWCSDKPLDEWHGVSTMESGRVLMLRLDHNNLKG 338
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BLAST of mRNA_H-canaliculatus_F_contig13066.2537.1 vs. uniprot
Match: A0A6H5L6T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.970e-15
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 DRQALVALYHATDGTSWNYSSNWDMDVPIAEWHGVEVNDQGRVVGLRLDHNNLQG 165
            DR+AL+AL+ +T G  W    NWD D  +A W GV VNDQGRVVGL L  NNLQG
Sbjct:   23 DREALIALFRSTGGAGWWRRDNWDTDAVLATWDGVNVNDQGRVVGLSLIRNNLQG 77
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BLAST of mRNA_H-canaliculatus_F_contig13066.2537.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.920e-15
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 DRQALVALYHATDGTSWNYSSNWDMDVPIAEWHGVEVNDQGRVVGLRLDHNNLQG 165
            DR ALV LY AT G +W    NWD D  +  WHGV+VNDQGRVV L+L  NNL+G
Sbjct:    5 DRDALVVLYRATGGENWRERQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEG 59
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13066.2537.1 vs. uniprot
Match: A0A6H5KND6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 7.410e-15
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 DRQALVALYHATDGTSWNYSSNWDMDVPIAEWHGVEVNDQGRVVGLRLDHNNL 159
            DR+ALVALY+AT    W Y+ NW+    +++WHGVEVN QGRVV L L  NNL
Sbjct:   57 DRKALVALYNATGRAKWEYTRNWNTSAALSQWHGVEVNCQGRVVKLSLGGNNL 109
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13066.2537.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 7.470e-15
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 DRQALVALYHATDGTSWNYSSNWDMDVPIAEWHGVEVNDQGRVVGLRLDHNNLQG 165
            DR+AL+AL+ +T G  W     WD D  +A W G EVNDQGRVVGL L  NNLQG
Sbjct:    5 DREALIALFRSTGGAGWKRRDKWDTDAVLATWDGAEVNDQGRVVGLHLSSNNLQG 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13066.2537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX36_9PHAE3.680e-1961.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK91_9PHAE7.750e-1863.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3C2_9PHAE9.790e-1861.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8T5_9PHAE3.350e-1761.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXI0_ECTSI1.730e-1660.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
F3PUA9_9BACE3.300e-1660.00Leucine Rich repeat-containing domain protein n=2 ... [more]
A0A6H5L6T0_9PHAE1.970e-1560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBY3_ECTSI2.920e-1560.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KND6_9PHAE7.410e-1558.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF46_ECTSI7.470e-1558.18LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13066contigH-canaliculatus_F_contig13066:625..789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score80.1
Seed ortholog evalue3.6e-13
Seed eggNOG ortholog763034.HMPREF9446_02332
KEGG koko:K07126,ko:K09973
EggNOG free text desc.IgA Peptidase M64
EggNOG OGs2FSTA@200643,4AMKX@815,4NQGD@976,COG4886@1,COG4886@2
COG Functional cat.N
Best tax levelBacteroidaceae
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-20_003730.1
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929041.8079882-CDS-H-canaliculatus_F_contig13066:624..7891622929041.8079882-CDS-H-canaliculatus_F_contig13066:624..789Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13066 625..789 -
1696845658.1213357-CDS-H-canaliculatus_F_contig13066:624..7891696845658.1213357-CDS-H-canaliculatus_F_contig13066:624..789Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13066 625..789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13066.2537.1prot_H-canaliculatus_F_contig13066.2537.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13066 625..789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13066.2537.1

>prot_H-canaliculatus_F_contig13066.2537.1 ID=prot_H-canaliculatus_F_contig13066.2537.1|Name=mRNA_H-canaliculatus_F_contig13066.2537.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=55bp
DRQALVALYHATDGTSWNYSSNWDMDVPIAEWHGVEVNDQGRVVGLRLDH
NNLQG
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mRNA from alignment at H-canaliculatus_F_contig13066:625..789-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13066.2537.1 ID=mRNA_H-canaliculatus_F_contig13066.2537.1|Name=mRNA_H-canaliculatus_F_contig13066.2537.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=165bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13066:625..789- (Hapterophycus canaliculatus Oshoro5f female)
GATCGCCAGGCACTGGTTGCCCTTTACCACGCAACCGACGGAACGAGCTG
GAATTATAGCAGCAACTGGGACATGGACGTTCCCATCGCGGAATGGCACG
GGGTCGAAGTCAACGATCAAGGCCGTGTGGTCGGGCTTCGTCTGGATCAC
AACAACCTCCAAGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13066:625..789-

>mRNA_H-canaliculatus_F_contig13066.2537.1 ID=mRNA_H-canaliculatus_F_contig13066.2537.1|Name=mRNA_H-canaliculatus_F_contig13066.2537.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=330bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13066:625..789- (Hapterophycus canaliculatus Oshoro5f female)
GATCGCCAGGCACTGGTTGCCCTTTACCACGCAACCGACGGAACGAGCTG
GAATTATAGCAGCAACTGGGACATGGACGTTCCCATCGCGGAATGGCACG
GGGTCGAAGTCAACGATCAAGGCCGTGTGGTCGGGCTTCGTCTGGATCAC
AACAACCTCCAAGGTGATCGCCAGGCACTGGTTGCCCTTTACCACGCAAC
CGACGGAACGAGCTGGAATTATAGCAGCAACTGGGACATGGACGTTCCCA
TCGCGGAATGGCACGGGGTCGAAGTCAACGATCAAGGCCGTGTGGTCGGG
CTTCGTCTGGATCACAACAACCTCCAAGGT
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