mRNA_H-canaliculatus_F_contig13064.2536.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13064.2536.1
Unique NamemRNA_H-canaliculatus_F_contig13064.2536.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13064.2536.1 vs. uniprot
Match: A0A6A5L5E7_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L5E7_LUPAL)

HSP 1 Score: 142 bits (357), Expect = 9.040e-38
Identity = 69/95 (72.63%), Postives = 72/95 (75.79%), Query Frame = 1
Query:    1 GILYLSTCVGLGYDLIEGLFPGTAQLPIQSNKDEQHLRSVTTSWPRNINLVPIDYAFRPRLRGRLTLLRLALSRNPWTFGESVSHTLCRYSCHHS 285
            GILY STCVG GY L   LFPGT   P QS+K E++  SVT  WP NI  VPIDYAFRPRLRGRLTL RL L RNPWTFGESV HTLCRYSC HS
Sbjct:  328 GILYQSTCVGFGYGLTRRLFPGTPSPPEQSDKLERYTASVTFRWPGNIRPVPIDYAFRPRLRGRLTLRRLTLRRNPWTFGESVFHTLCRYSCQHS 422          
BLAST of mRNA_H-canaliculatus_F_contig13064.2536.1 vs. uniprot
Match: A0A6A5L269_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L269_LUPAL)

HSP 1 Score: 142 bits (357), Expect = 1.420e-37
Identity = 69/95 (72.63%), Postives = 72/95 (75.79%), Query Frame = 1
Query:    1 GILYLSTCVGLGYDLIEGLFPGTAQLPIQSNKDEQHLRSVTTSWPRNINLVPIDYAFRPRLRGRLTLLRLALSRNPWTFGESVSHTLCRYSCHHS 285
            GILY STCVG GY L   LFPGT   P QS+K E++  SVT  WP NI  VPIDYAFRPRLRGRLTL RL L RNPWTFGESV HTLCRYSC HS
Sbjct:  379 GILYQSTCVGFGYGLTRRLFPGTPSPPEQSDKLERYTASVTFRWPGNIRPVPIDYAFRPRLRGRLTLRRLTLRRNPWTFGESVFHTLCRYSCQHS 473          
BLAST of mRNA_H-canaliculatus_F_contig13064.2536.1 vs. uniprot
Match: A0A6A5L1U4_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L1U4_LUPAL)

HSP 1 Score: 142 bits (357), Expect = 2.440e-37
Identity = 69/95 (72.63%), Postives = 72/95 (75.79%), Query Frame = 1
Query:    1 GILYLSTCVGLGYDLIEGLFPGTAQLPIQSNKDEQHLRSVTTSWPRNINLVPIDYAFRPRLRGRLTLLRLALSRNPWTFGESVSHTLCRYSCHHS 285
            GILY STCVG GY L   LFPGT   P QS+K E++  SVT  WP NI  VPIDYAFRPRLRGRLTL RL L RNPWTFGESV HTLCRYSC HS
Sbjct:  337 GILYQSTCVGFGYGLTRRLFPGTPSPPEQSDKLERYTASVTFRWPGNIRPVPIDYAFRPRLRGRLTLRRLTLRRNPWTFGESVFHTLCRYSCQHS 431          
BLAST of mRNA_H-canaliculatus_F_contig13064.2536.1 vs. uniprot
Match: A0A0K2VLC7_LEPSM (Uncharacterized protein (Fragment) n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2VLC7_LEPSM)

HSP 1 Score: 115 bits (289), Expect = 3.810e-32
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 1
Query:   55 LFPGTAQLPIQSNKDEQHLRSVTTSWPRNINLVPIDYAFRPRLRGRLTLLRLALSRNPWTFGE 243
            LFPGT++ PIQS+KDE   RSVTTSWPRNINLVPIDYAFRPRLRGRLTLLRLALSRNPW FGE
Sbjct:    3 LFPGTSKQPIQSDKDELPSRSVTTSWPRNINLVPIDYAFRPRLRGRLTLLRLALSRNPWIFGE 65          
BLAST of mRNA_H-canaliculatus_F_contig13064.2536.1 vs. uniprot
Match: Q3BKI0_9PROT (Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKI0_9PROT)

HSP 1 Score: 117 bits (292), Expect = 1.550e-31
Identity = 57/77 (74.03%), Postives = 62/77 (80.52%), Query Frame = 1
Query:   55 LFPGTAQLPIQSNKDEQHLRSVTTSWPRNINLVPIDYAFRPRLRGRLTLLRLALSRNPWTFGESVSHTLCRYSCHHS 285
            LFPG + L  QS+K  Q  + VT+S P NIN+VPIDYAFRPRLRGRLTL  LAL RNPWTFGESVSHTLCRYSC HS
Sbjct:   64 LFPGPSSLHPQSDKQVQLTKVVTSSRPTNINVVPIDYAFRPRLRGRLTLRGLALRRNPWTFGESVSHTLCRYSCQHS 140          
BLAST of mRNA_H-canaliculatus_F_contig13064.2536.1 vs. uniprot
Match: A0A2P2K9Q4_RHIMU (Uncharacterized protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2K9Q4_RHIMU)

HSP 1 Score: 109 bits (273), Expect = 1.680e-29
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   55 LFPGTAQLPIQSNKDEQHLRSVTTSWPRNINLVPIDYAFRPRLRGRLTLLRLALSRNPWTFGESVSHTLCRYSCHHS 285
            LFPGT   P QS K  QH   VT  W +NI+ +PIDYAFRPRLRGRLTL RL L RNPWTFG++V H++CRYSC HS
Sbjct:    4 LFPGTHSRPDQSIKVGQHTGFVTIHWLQNIHCIPIDYAFRPRLRGRLTLRRLTLRRNPWTFGDTVFHSVCRYSCQHS 80          
BLAST of mRNA_H-canaliculatus_F_contig13064.2536.1 vs. uniprot
Match: A0A7S3IBP1_9CILI (Hypothetical protein (Fragment) n=2 Tax=Anophryoides haemophila TaxID=46462 RepID=A0A7S3IBP1_9CILI)

HSP 1 Score: 109 bits (272), Expect = 5.810e-29
Identity = 58/96 (60.42%), Postives = 63/96 (65.62%), Query Frame = 1
Query:    1 GILYLSTCVGLGYDLIEGLFPGTAQLPIQSNKDEQHLRSVT-TSWPRNINLVPIDYAFRPRLRGRLTLLRLALSRNPWTFGESVSHTLCRYSCHHS 285
            GILY STCVGLGY L  G   G       +     HLR  + TS P NIN+VPIDY  R RLRGRLTLLRLALSRNPW FG+  SH + RYSC HS
Sbjct:   13 GILYHSTCVGLGYGLYGGAISGDDFTAWSNPISPDHLRHPSHTSRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPWDFGDRASHPVYRYSCQHS 108          
BLAST of mRNA_H-canaliculatus_F_contig13064.2536.1 vs. uniprot
Match: A0A0P6G9A6_9CRUS (Uncharacterized protein (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P6G9A6_9CRUS)

HSP 1 Score: 100 bits (250), Expect = 2.250e-25
Identity = 52/80 (65.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   49 EGLFPGTAQLPIQSNKDEQHLRSVT-TSWPRNINLVPIDYAFRPRLRGRLTLLRLALSRNPWTFGESVSHTLCRYSCHHS 285
            EGLFPGT+     +     HLR  + TS P NIN+VPIDY  R RLRGRLTLLRLALSRNPW FG+S SHT+ RYSC HS
Sbjct:    4 EGLFPGTSFTAWSNPISPDHLRHPSHTSRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPWNFGDSASHTVNRYSCLHS 83          
BLAST of mRNA_H-canaliculatus_F_contig13064.2536.1 vs. uniprot
Match: E0XS38_9PROT (Uncharacterized protein (Fragment) n=1 Tax=uncultured alpha proteobacterium HF0070_14E07 TaxID=710804 RepID=E0XS38_9PROT)

HSP 1 Score: 95.9 bits (237), Expect = 2.470e-23
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 1
Query:  118 VTTSWPRNINLVPIDYAFRPRLRGRLTLLRLALSRNPWTFGESVSHTLCRYSCHHS 285
            VTT+  RNINL+PIDY FRPRLRGRLTL  L L RNPW +GESVSHTLCRYSC HS
Sbjct:    7 VTTTRLRNINLIPIDYGFRPRLRGRLTLGGLTLPRNPWAYGESVSHTLCRYSCQHS 62          
BLAST of mRNA_H-canaliculatus_F_contig13064.2536.1 vs. uniprot
Match: A0A7S3ICQ2_9CILI (Hypothetical protein (Fragment) n=1 Tax=Anophryoides haemophila TaxID=46462 RepID=A0A7S3ICQ2_9CILI)

HSP 1 Score: 88.6 bits (218), Expect = 1.210e-20
Identity = 46/71 (64.79%), Postives = 51/71 (71.83%), Query Frame = 1
Query:   79 PIQSN--KDEQHLRSVTTSWPRNINLVPIDYAFRPRLRGRLTLLRLALSRNPWTFGESVSHTLCRYSCHHS 285
            PI+ N  +D  H     T+ P NIN+VPIDY  R RLRGRLTLLRLALSRNPW+FGE  SH L RYSC HS
Sbjct:   33 PIRENNTRDPSH-----TTRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPWSFGERASHPLYRYSCLHS 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13064.2536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A5L5E7_LUPAL9.040e-3872.63Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L269_LUPAL1.420e-3772.63Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L1U4_LUPAL2.440e-3772.63Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A0K2VLC7_LEPSM3.810e-3287.30Uncharacterized protein (Fragment) n=1 Tax=Lepeoph... [more]
Q3BKI0_9PROT1.550e-3174.03Uncharacterized protein n=1 Tax=Magnetospirillum g... [more]
A0A2P2K9Q4_RHIMU1.680e-2966.23Uncharacterized protein n=1 Tax=Rhizophora mucrona... [more]
A0A7S3IBP1_9CILI5.810e-2960.42Hypothetical protein (Fragment) n=2 Tax=Anophryoid... [more]
A0A0P6G9A6_9CRUS2.250e-2565.00Uncharacterized protein (Fragment) n=1 Tax=Daphnia... [more]
E0XS38_9PROT2.470e-2378.57Uncharacterized protein (Fragment) n=1 Tax=uncultu... [more]
A0A7S3ICQ2_9CILI1.210e-2064.79Hypothetical protein (Fragment) n=1 Tax=Anophryoid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13064contigH-canaliculatus_F_contig13064:2690..2980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score111.7
Seed ortholog evalue1.9e-22
Seed eggNOG ortholog1150469.RSPPHO_03259
EggNOG OGs1NKAB@1224,2DTV2@1,33MS7@2
Best tax levelProteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929041.761194-CDS-H-canaliculatus_F_contig13064:2689..29801622929041.761194-CDS-H-canaliculatus_F_contig13064:2689..2980Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13064 2690..2980 -
1696845658.109895-CDS-H-canaliculatus_F_contig13064:2689..29801696845658.109895-CDS-H-canaliculatus_F_contig13064:2689..2980Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13064 2690..2980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13064.2536.1prot_H-canaliculatus_F_contig13064.2536.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13064 2690..2980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13064.2536.1

>prot_H-canaliculatus_F_contig13064.2536.1 ID=prot_H-canaliculatus_F_contig13064.2536.1|Name=mRNA_H-canaliculatus_F_contig13064.2536.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=97bp
GILYLSTCVGLGYDLIEGLFPGTAQLPIQSNKDEQHLRSVTTSWPRNINL
VPIDYAFRPRLRGRLTLLRLALSRNPWTFGESVSHTLCRYSCHHSR*
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mRNA from alignment at H-canaliculatus_F_contig13064:2690..2980-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13064.2536.1 ID=mRNA_H-canaliculatus_F_contig13064.2536.1|Name=mRNA_H-canaliculatus_F_contig13064.2536.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=291bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13064:2690..2980- (Hapterophycus canaliculatus Oshoro5f female)
GGTATTCTCTACCTGTCCACCTGTGTCGGTTTAGGGTACGATCTTATAGA GGGGCTATTTCCAGGAACCGCTCAGCTGCCCATCCAATCCAATAAGGATG AACAACACCTGCGATCCGTCACCACCTCATGGCCCAGGAATATTAACCTG GTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGGCTTACCCT GCTCAGATTAGCTTTAAGCAGGAACCCTTGGACTTTCGGCGAGAGTGTCT CTCACACTCTTTGTCGCTACTCATGTCATCATTCTCGCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13064:2690..2980-

>mRNA_H-canaliculatus_F_contig13064.2536.1 ID=mRNA_H-canaliculatus_F_contig13064.2536.1|Name=mRNA_H-canaliculatus_F_contig13064.2536.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=582bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13064:2690..2980- (Hapterophycus canaliculatus Oshoro5f female)
GGTATTCTCTACCTGTCCACCTGTGTCGGTTTAGGGTACGATCTTATAGA
GGGGCTATTTCCAGGAACCGCTCAGCTGCCCATCCAATCCAATAAGGATG
AACAACACCTGCGATCCGTCACCACCTCATGGCCCAGGAATATTAACCTG
GTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGGCTTACCCT
GCTCAGATTAGCTTTAAGCAGGAACCCTTGGACTTTCGGCGAGAGTGTCT
CTCACACTCTTTGTCGCTACTCATGTCATCATTCTCGCTAGGGTATTCTC
TACCTGTCCACCTGTGTCGGTTTAGGGTACGATCTTATAGAGGGGCTATT
TCCAGGAACCGCTCAGCTGCCCATCCAATCCAATAAGGATGAACAACACC
TGCGATCCGTCACCACCTCATGGCCCAGGAATATTAACCTGGTTCCCATC
GACTACGCCTTTCGGCCTCGCCTTAGGGGTCGGCTTACCCTGCTCAGATT
AGCTTTAAGCAGGAACCCTTGGACTTTCGGCGAGAGTGTCTCTCACACTC
TTTGTCGCTACTCATGTCATCATTCTCGCTAG
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