mRNA_H-canaliculatus_F_contig13052.2525.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13052.2525.1
Unique NamemRNA_H-canaliculatus_F_contig13052.2525.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13052.2525.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.100e-13
Identity = 42/74 (56.76%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:    1 MRVPGAAVALVGSHVDQMTGEEAARASSDLHT---------------VATNFIQEKASNAARTQSVRCIDAEST 177
            MRVPGAAVALVGSHVDQM  E+A +A + LHT               V + FI++KA NA+R QS+RCIDAEST
Sbjct:  394 MRVPGAAVALVGSHVDQMESEDARQAETHLHTGEASWFFRGRVPCSLVVSKFIKDKAGNASRRQSIRCIDAEST 467
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13052.2525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKS5_ECTSI4.100e-1356.76LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13052contigH-canaliculatus_F_contig13052:39..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size184
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929040.5549467-CDS-H-canaliculatus_F_contig13052:38..1351622929040.5549467-CDS-H-canaliculatus_F_contig13052:38..135Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13052 39..135 +
1696845657.6342657-CDS-H-canaliculatus_F_contig13052:38..1351696845657.6342657-CDS-H-canaliculatus_F_contig13052:38..135Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13052 39..135 +
1622929040.5767422-CDS-H-canaliculatus_F_contig13052:442..5281622929040.5767422-CDS-H-canaliculatus_F_contig13052:442..528Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13052 443..528 +
1696845657.648527-CDS-H-canaliculatus_F_contig13052:442..5281696845657.648527-CDS-H-canaliculatus_F_contig13052:442..528Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13052 443..528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13052.2525.1prot_H-canaliculatus_F_contig13052.2525.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13052 39..528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13052.2525.1

>prot_H-canaliculatus_F_contig13052.2525.1 ID=prot_H-canaliculatus_F_contig13052.2525.1|Name=mRNA_H-canaliculatus_F_contig13052.2525.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=61bp
MRVPGAAVALVGSHVDQMTGEEAARASSDLHTVATNFIQEKASNAARTQS
VRCIDAESTTT
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mRNA from alignment at H-canaliculatus_F_contig13052:39..528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13052.2525.1 ID=mRNA_H-canaliculatus_F_contig13052.2525.1|Name=mRNA_H-canaliculatus_F_contig13052.2525.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=490bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13052:39..528+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCGTTCCTGGCGCGGCCGTAGCTCTCGTGGGGTCCCACGTAGACCA
GATGACGGGGGAGGAAGCTGCCCGGGCCAGTAGCGACCTTCACACCGGTA
AGACGATGTTGTGTTGCAAGCGAATGCTCTTCAAGAACTGCTCCTTGTTC
GAGCTTGGGCTGGAAGCCGTTTACATGCTGCAGGCGGGGGTGTATGAAAG
CAGGAACGACGTACCGGCGCTGTTTGTTCTCTAGGTTGACGAAAGATATG
GGAGCCCTGAAGATGTCTTGTGGTTGTGGGGTTCGACTTGTCGAAACCGA
GCAAGATATGGTATCAGCGTTCCACCGTTCACAATGGATATGCCCGTAAC
AATTGTGGGCAACATTTTCCCAACGACCAACCCCCGCTCTCTGTCCTGTT
GTAGTTGCGACCAACTTTATTCAGGAAAAGGCCAGCAATGCAGCAAGGAC
GCAGAGTGTTAGGTGCATCGACGCAGAGTCCACGACGACT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13052:39..528+

>mRNA_H-canaliculatus_F_contig13052.2525.1 ID=mRNA_H-canaliculatus_F_contig13052.2525.1|Name=mRNA_H-canaliculatus_F_contig13052.2525.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=366bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13052:39..528+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCGTTCCTGGCGCGGCCGTAGCTCTCGTGGGGTCCCACGTAGACCA
GATGACGGGGGAGGAAGCTGCCCGGGCCAGTAGCGACCTTCACACCGATG
CGCGTTCCTGGCGCGGCCGTAGCTCTCGTGGGGTCCCACGTAGACCAGAT
GACGGGGGAGGAAGCTGCCCGGGCCAGTAGCGACCTTCACACCGTTGCGA
CCAACTTTATTCAGGAAAAGGCCAGCAATGCAGCAAGGACGCAGAGTGTT
AGGTGCATCGACGCAGAGTCCACGACGACTTTGCGACCAACTTTATTCAG
GAAAAGGCCAGCAATGCAGCAAGGACGCAGAGTGTTAGGTGCATCGACGC
AGAGTCCACGACGACT
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