mRNA_H-canaliculatus_F_contig1303.2514.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1303.2514.1
Unique NamemRNA_H-canaliculatus_F_contig1303.2514.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1303.2514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1303contigH-canaliculatus_F_contig1303:24113..25214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size979
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1303.2514.1prot_H-canaliculatus_F_contig1303.2514.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1303 24303..24995 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929036.3309886-UTR-H-canaliculatus_F_contig1303:24112..243021622929036.3309886-UTR-H-canaliculatus_F_contig1303:24112..24302Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1303 24113..24302 +
1696845656.273664-UTR-H-canaliculatus_F_contig1303:24112..243021696845656.273664-UTR-H-canaliculatus_F_contig1303:24112..24302Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1303 24113..24302 +
1622929036.3845587-UTR-H-canaliculatus_F_contig1303:24995..252141622929036.3845587-UTR-H-canaliculatus_F_contig1303:24995..25214Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1303 24996..25214 +
1696845656.3094275-UTR-H-canaliculatus_F_contig1303:24995..252141696845656.3094275-UTR-H-canaliculatus_F_contig1303:24995..25214Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1303 24996..25214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929036.3503425-CDS-H-canaliculatus_F_contig1303:24302..244921622929036.3503425-CDS-H-canaliculatus_F_contig1303:24302..24492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1303 24303..24492 +
1696845656.289354-CDS-H-canaliculatus_F_contig1303:24302..244921696845656.289354-CDS-H-canaliculatus_F_contig1303:24302..24492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1303 24303..24492 +
1622929036.3671553-CDS-H-canaliculatus_F_contig1303:24615..249951622929036.3671553-CDS-H-canaliculatus_F_contig1303:24615..24995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1303 24616..24995 +
1696845656.299746-CDS-H-canaliculatus_F_contig1303:24615..249951696845656.299746-CDS-H-canaliculatus_F_contig1303:24615..24995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1303 24616..24995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1303.2514.1

>prot_H-canaliculatus_F_contig1303.2514.1 ID=prot_H-canaliculatus_F_contig1303.2514.1|Name=mRNA_H-canaliculatus_F_contig1303.2514.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=190bp
MGGIQTDPESSRRSRCADGSSRPMASVCCGSLLHRYGLCAPPCNRPTDES
VRCTVLASYSQPRPALQSAFTLGASAVLKKQPAGSERDADPLIPMILFCA
VVAGRVECLEYFRAEWVRRFCVVESFGRAGVCASAPVFCRREQGVCPEAA
NTTRTSRSVVWTYQFVTALALLRTLVSRDAVRSIVGLEQ*
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mRNA from alignment at H-canaliculatus_F_contig1303:24113..25214+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1303.2514.1 ID=mRNA_H-canaliculatus_F_contig1303.2514.1|Name=mRNA_H-canaliculatus_F_contig1303.2514.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1102bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1303:24113..25214+ (Hapterophycus canaliculatus Oshoro5f female)
CGGTTTCATGTGGAAGTTCAGGTGAGGAAAGGGGTCTAAGCGACTGGCTT
TAGGTTGTTCGTCGGCCGCCCGTGAACGCTGGCAAGCGGGCTGCACTCTG
CGAAGGGCACCCATCCCACCAGACGGTTCATCGACGACCCCCCCTGGCCT
TGAGACATAAAAACAGCCCCATTACTGCCGCACGGCGGTGATGGGTGGGA
TTCAAACAGACCCAGAAAGCAGCCGACGCAGCCGGTGTGCAGATGGTAGC
TCTCGCCCAATGGCCTCTGTTTGTTGTGGTTCTCTGTTGCACCGGTACGG
TTTGTGTGCACCGCCGTGCAACCGCCCGACGGACGAGAGCGTGCGTTGTA
CCGTTCTGGCCTCTTACTCGCAACCTCGACGCAAAAAACAAGACTGTAAC
GGATGAGATTCTCCGCAAGGTGCGGGTGCGGTTGACCGATCTTCCTACTC
GGTTCTGCGTTCGCTCGTCTGTTATCGTCGCGAGTGCTTCTGGGATCTCG
AAGCGGCGCTCCAGTCTGCGTTCACGCTTGGCGCCTCCGCGGTGTTGAAG
AAGCAGCCCGCGGGGAGCGAACGAGACGCGGATCCCCTGATCCCCATGAT
CCTTTTTTGTGCGGTTGTTGCAGGTCGCGTTGAATGCCTCGAATATTTCC
GTGCCGAGTGGGTGCGAAGGTTTTGTGTCGTCGAGAGTTTCGGGCGTGCC
GGCGTCTGTGCGTCCGCCCCCGTTTTTTGCCGCCGGGAGCAGGGGGTGTG
CCCAGAAGCTGCAAACACAACCCGTACGTCACGAAGCGTTGTTTGGACGT
ACCAGTTTGTCACAGCGCTTGCACTTCTCCGTACGCTCGTATCTCGCGAC
GCTGTCCGGAGCATCGTTGGCCTCGAGCAGTGAAGAGCGACTCGATTCGG
GATCACTTCCGCGTCGGCGAACTGGTCCGAAGCGGACACTCTTTCGCCCC
CGCTCCCCTCCCCGCGCCCCGCCTCCTCCCCTCCCCTTCATCTCCCTCCG
ATCAAGGCCATCAGACCTCCTGAAAACGCCTCGACAAGCTAGTCCAACAA
CCCACCCCTGCTCTTCCGTTTCGCTTTCTCCATCGCCGTCGATTTCTTCG
TC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1303:24113..25214+

>mRNA_H-canaliculatus_F_contig1303.2514.1 ID=mRNA_H-canaliculatus_F_contig1303.2514.1|Name=mRNA_H-canaliculatus_F_contig1303.2514.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1140bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1303:24113..25214+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTGGGATTCAAACAGACCCAGAAAGCAGCCGACGCAGCCGGTGTGC
AGATGGTAGCTCTCGCCCAATGGCCTCTGTTTGTTGTGGTTCTCTGTTGC
ACCGGTACGGTTTGTGTGCACCGCCGTGCAACCGCCCGACGGACGAGAGC
GTGCGTTGTACCGTTCTGGCCTCTTACTCGCAACCTCGACATGGGTGGGA
TTCAAACAGACCCAGAAAGCAGCCGACGCAGCCGGTGTGCAGATGGTAGC
TCTCGCCCAATGGCCTCTGTTTGTTGTGGTTCTCTGTTGCACCGGTACGG
TTTGTGTGCACCGCCGTGCAACCGCCCGACGGACGAGAGCGTGCGTTGTA
CCGTTCTGGCCTCTTACTCGCAACCTCGACCGGCGCTCCAGTCTGCGTTC
ACGCTTGGCGCCTCCGCGGTGTTGAAGAAGCAGCCCGCGGGGAGCGAACG
AGACGCGGATCCCCTGATCCCCATGATCCTTTTTTGTGCGGTTGTTGCAG
GTCGCGTTGAATGCCTCGAATATTTCCGTGCCGAGTGGGTGCGAAGGTTT
TGTGTCGTCGAGAGTTTCGGGCGTGCCGGCGTCTGTGCGTCCGCCCCCGT
TTTTTGCCGCCGGGAGCAGGGGGTGTGCCCAGAAGCTGCAAACACAACCC
GTACGTCACGAAGCGTTGTTTGGACGTACCAGTTTGTCACAGCGCTTGCA
CTTCTCCGTACGCTCGTATCTCGCGACGCTGTCCGGAGCATCGTTGGCCT
CGAGCAGTGACGGCGCTCCAGTCTGCGTTCACGCTTGGCGCCTCCGCGGT
GTTGAAGAAGCAGCCCGCGGGGAGCGAACGAGACGCGGATCCCCTGATCC
CCATGATCCTTTTTTGTGCGGTTGTTGCAGGTCGCGTTGAATGCCTCGAA
TATTTCCGTGCCGAGTGGGTGCGAAGGTTTTGTGTCGTCGAGAGTTTCGG
GCGTGCCGGCGTCTGTGCGTCCGCCCCCGTTTTTTGCCGCCGGGAGCAGG
GGGTGTGCCCAGAAGCTGCAAACACAACCCGTACGTCACGAAGCGTTGTT
TGGACGTACCAGTTTGTCACAGCGCTTGCACTTCTCCGTACGCTCGTATC
TCGCGACGCTGTCCGGAGCATCGTTGGCCTCGAGCAGTGA
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