mRNA_H-canaliculatus_F_contig13014.2504.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13014.2504.1
Unique NamemRNA_H-canaliculatus_F_contig13014.2504.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13014.2504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13014contigH-canaliculatus_F_contig13014:2497..3229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size735
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929035.3755279-UTR-H-canaliculatus_F_contig13014:2496..28481622929035.3755279-UTR-H-canaliculatus_F_contig13014:2496..2848Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13014 2497..2848 +
1696845655.8314657-UTR-H-canaliculatus_F_contig13014:2496..28481696845655.8314657-UTR-H-canaliculatus_F_contig13014:2496..2848Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13014 2497..2848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929035.3927448-CDS-H-canaliculatus_F_contig13014:2848..32291622929035.3927448-CDS-H-canaliculatus_F_contig13014:2848..3229Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13014 2849..3229 +
1696845655.8467677-CDS-H-canaliculatus_F_contig13014:2848..32291696845655.8467677-CDS-H-canaliculatus_F_contig13014:2848..3229Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13014 2849..3229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13014.2504.1prot_H-canaliculatus_F_contig13014.2504.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13014 2849..3229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13014.2504.1

>prot_H-canaliculatus_F_contig13014.2504.1 ID=prot_H-canaliculatus_F_contig13014.2504.1|Name=mRNA_H-canaliculatus_F_contig13014.2504.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp
MRQQRASPPSTIKAAKKYVGGRPLADNSCAPRYLGEHGQKHDERREQILA
LWPYRSLRATLQVSRLVRVLTVLPLAVTSTSPRWTCAFLRCLVRMKPALP
NGVQLISLALAGTFLYPPSSISTRLAS
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mRNA from alignment at H-canaliculatus_F_contig13014:2497..3229+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13014.2504.1 ID=mRNA_H-canaliculatus_F_contig13014.2504.1|Name=mRNA_H-canaliculatus_F_contig13014.2504.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=733bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13014:2497..3229+ (Hapterophycus canaliculatus Oshoro5f female)
GGATGGCACTACCGTGCTCAGGAAAGCGGGACCATCGTTCTTCGGATACC
GTGTCAAAATCCTCGAGCTCGAGCTCTTGATTTTTACACGGTATAGGGGA
GGGCAGCAGGAGTTAGACGTGAATGATCGACGGCGGTGTGGAGGATCGAT
CGATCTCGATGCACGTTCATGCATTCTGGCAACTTTTGACTGACTACTGT
ACGCACAGTCATGCCGTACGATGTTTTTTTGCGGTATCAAGCGCCATTTC
CACTGCACGTCGAGACACTCAGGACGCGAGTTTTGAATTTTGTAGCAAAA
CAGTCGAGCGCAAAATCCAAACCGGCCAACCGCACGAAGGCATGGCCGGA
AAATGCGGCAACAGCGAGCTTCACCACCCTCGACAATCAAGGCAGCGAAG
AAGTATGTGGGAGGGCGACCTCTCGCAGACAACTCATGTGCCCCACGTTA
TCTAGGCGAACACGGGCAGAAACACGACGAGAGGAGAGAACAAATTTTGG
CATTGTGGCCGTACCGATCCCTCCGTGCCACTCTACAAGTGTCTAGATTA
GTCCGAGTACTTACGGTGTTGCCCCTCGCAGTGACCTCCACCTCCCCCAG
GTGGACGTGCGCGTTCTTGCGCTGCCTCGTCCGAATGAAGCCAGCTCTGC
CGAATGGCGTCCAGCTCATCAGCTTGGCCTTAGCGGGGACCTTCTTGTAC
CCCCCCTCTTCCATATCCACCCGCCTTGCCTCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13014:2497..3229+

>mRNA_H-canaliculatus_F_contig13014.2504.1 ID=mRNA_H-canaliculatus_F_contig13014.2504.1|Name=mRNA_H-canaliculatus_F_contig13014.2504.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13014:2497..3229+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGGCAACAGCGAGCTTCACCACCCTCGACAATCAAGGCAGCGAAGAA
GTATGTGGGAGGGCGACCTCTCGCAGACAACTCATGTGCCCCACGTTATC
TAGGCGAACACGGGCAGAAACACGACGAGAGGAGAGAACAAATTTTGGCA
TTGTGGCCGTACCGATCCCTCCGTGCCACTCTACAAGTGTCTAGATTAGT
CCGAGTACTTACGGTGTTGCCCCTCGCAGTGACCTCCACCTCCCCCAGGT
GGACGTGCGCGTTCTTGCGCTGCCTCGTCCGAATGAAGCCAGCTCTGCCG
AATGGCGTCCAGCTCATCAGCTTGGCCTTAGCGGGGACCTTCTTGTACCC
CCCCTCTTCCATATCCACCCGCCTTGCCTCAATGCGGCAACAGCGAGCTT
CACCACCCTCGACAATCAAGGCAGCGAAGAAGTATGTGGGAGGGCGACCT
CTCGCAGACAACTCATGTGCCCCACGTTATCTAGGCGAACACGGGCAGAA
ACACGACGAGAGGAGAGAACAAATTTTGGCATTGTGGCCGTACCGATCCC
TCCGTGCCACTCTACAAGTGTCTAGATTAGTCCGAGTACTTACGGTGTTG
CCCCTCGCAGTGACCTCCACCTCCCCCAGGTGGACGTGCGCGTTCTTGCG
CTGCCTCGTCCGAATGAAGCCAGCTCTGCCGAATGGCGTCCAGCTCATCA
GCTTGGCCTTAGCGGGGACCTTCTTGTACCCCCCCTCTTCCATATCCACC
CGCCTTGCCTCA
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