mRNA_H-canaliculatus_F_contig13008.2501.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13008.2501.1
Unique NamemRNA_H-canaliculatus_F_contig13008.2501.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13008.2501.1 vs. uniprot
Match: D8LM77_ECTSI (Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM77_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 2.450e-47
Identity = 98/121 (80.99%), Postives = 101/121 (83.47%), Query Frame = 1 
Query:   49 KSRAVEPVGGD--DDVDSLFGDDDXXXXXXXXXXXXXXXASRAEQMAAAKAAKDANKKVDRSQIVFEVKPWEAGADLKGLFDKIRQTEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKV 405
            KSRAVE  GGD  DDVDSLFGDD+                SRAEQMAAAK+AKDANKKVDRSQIVFEVKPWEAGADLKGLFDKIR+TEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKV
Sbjct:  704 KSRAVEVGGGDEGDDVDSLFGDDEAGEEGEAPASGAGM--SRAEQMAAAKSAKDANKKVDRSQIVFEVKPWEAGADLKGLFDKIRKTEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKV 822
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BLAST of mRNA_H-canaliculatus_F_contig13008.2501.1 vs. uniprot
Match: A0A6H5JFV9_9PHAE (EF1_GNE domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFV9_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.660e-35
Identity = 86/124 (69.35%), Postives = 95/124 (76.61%), Query Frame = 1 
Query:   34 APAAVKSRAVEPVGGDDDVDSLFGDDDXXXXXXXXXXXXXXXASRAEQMAAAKAAKDANKKVDRSQIVFEVKPWEAGADLKGLFDKIRQTEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKV 405
            AP   + +A +    DD+VD+LF        XXXXXXXXXXX SRA++MAAAK AKDA KK+DRSQIVFEVKPW+   DLK LF KI  TEIDGLVWGEAHKLVPVAFGVKKLVLSCVV D KV
Sbjct:   39 APVKQEKKAAKKPEADDEVDNLF-------DXXXXXXXXXXXESRADKMAAAKKAKDAKKKIDRSQIVFEVKPWDTETDLKELFGKICATEIDGLVWGEAHKLVPVAFGVKKLVLSCVVEDDKV 155
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BLAST of mRNA_H-canaliculatus_F_contig13008.2501.1 vs. uniprot
Match: A0A6H5KBH2_9PHAE (EF1_GNE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBH2_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 4.580e-35
Identity = 67/81 (82.72%), Postives = 72/81 (88.89%), Query Frame = 1 
Query:  163 SRAEQMAAAKAAKDANKKVDRSQIVFEVKPWEAGADLKGLFDKIRQTEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKV 405
            SRAE+MA AKAAKDA KKVDRSQIVFEVKPW+   DLKGLF KI +T+I+GLVWGEAHKLVPVAFGVKKLVLSCVV D KV
Sbjct:  125 SRAEKMAEAKAAKDAKKKVDRSQIVFEVKPWDTETDLKGLFAKICKTKIEGLVWGEAHKLVPVAFGVKKLVLSCVVEDDKV 205
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BLAST of mRNA_H-canaliculatus_F_contig13008.2501.1 vs. uniprot
Match: A0A835ZFP2_9STRA (EF-1 guanine nucleotide exchange domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFP2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.030e-23
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:  163 SRAEQMAAAKAAKDANKKVDRSQIVFEVKPWEAGADLKGLFDKIR-QTEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKV 405
            SRAEQMAAAKAAKD  KK++ S +V+EVKPWEA  DLK L++KI+ +  +DGL W E   L PVAFG+ KLV++C + D KV
Sbjct:   77 SRAEQMAAAKAAKDKKKKIEMSNVVYEVKPWEADQDLKALYEKIKKECAMDGLRWSEGCTLAPVAFGINKLVIACTIEDDKV 158
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BLAST of mRNA_H-canaliculatus_F_contig13008.2501.1 vs. uniprot
Match: A0A6G0WJF4_9STRA (EF1_GNE domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJF4_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.210e-22
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:  166 RAEQMAAAKAAKDANKKVDRSQIVFEVKPWEAGADLKGLFDKIRQTEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKV 405
            RAE   A K  K+  K ++RSQ+V EVKPWEA  DL+ L  KI+Q E+DGL WGE HKLVPVAFG+KKL++ C+++D KV
Sbjct:  125 RAEAAKANK--KEKPKPIERSQVVIEVKPWEAETDLEELAAKIKQVEVDGLTWGEGHKLVPVAFGIKKLLIQCIIIDDKV 202
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BLAST of mRNA_H-canaliculatus_F_contig13008.2501.1 vs. uniprot
Match: A0A6G0WMX9_9STRA (EF1_GNE domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WMX9_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.500e-22
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:  166 RAEQMAAAKAAKDANKKVDRSQIVFEVKPWEAGADLKGLFDKIRQTEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKV 405
            RAE   A K  K+  K ++RSQ+V EVKPWEA  DL+ L  KI++ E+DGL WGE HKLVPVAFG+KKL++ C+++D KV
Sbjct:   85 RAEAAKANK--KEKPKPIERSQVVIEVKPWEAETDLEELAAKIKEVEVDGLTWGEGHKLVPVAFGIKKLLIQCIIIDDKV 162
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BLAST of mRNA_H-canaliculatus_F_contig13008.2501.1 vs. uniprot
Match: A0A835Z3J2_9STRA (Lysine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3J2_9STRA)

HSP 1 Score: 100 bits (249), Expect = 5.380e-22
Identity = 71/110 (64.55%), Postives = 83/110 (75.45%), Query Frame = 1 
Query:   79 DDDVDSLFGDDDXXXXXXXXXXXXXXXASRAEQMAAAKAAKDANKKVDRSQIVFEVKPWEAGADLKGLFDKIR-QTEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKV 405
            DDD+D +FGDDDXXXXXXXXXXXXXXX      MAAAKAAKD  KKV+RSQ+V EVKPW++  DLK L+ KI  +   DGLVW E   + PVAFG+ KLV+SCV+ D KV
Sbjct:  704 DDDIDDMFGDDDXXXXXXXXXXXXXXXXXXX--MAAAKAAKDKKKKVERSQVVLEVKPWDSETDLKALWAKIMAEVTADGLVWAEGFNIAPVAFGIMKLVISCVIEDEKV 811
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BLAST of mRNA_H-canaliculatus_F_contig13008.2501.1 vs. uniprot
Match: A0A485LAV1_9STRA (Aste57867_18076 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAV1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.770e-21
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:  166 RAEQMAAAKAAKDANKKVDRSQIVFEVKPWEAGADLKGLFDKIRQTEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKV 405
            RAE   A K  K+  K ++RSQ+V EVKPWEA  DL+ L  KI+  E+DGL WGE HKLVPVAFG+KKL++ C+++D KV
Sbjct:  125 RAEAAKANK--KEKPKPIERSQVVIEVKPWEAETDLEELAVKIKALEVDGLTWGEGHKLVPVAFGIKKLLVQCIIIDDKV 202
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BLAST of mRNA_H-canaliculatus_F_contig13008.2501.1 vs. uniprot
Match: A0A485L9S1_9STRA (Aste57867_18212 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9S1_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.290e-21
Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:  166 RAEQMAAAKAAKDANKKVDRSQIVFEVKPWEAGADLKGLFDKIRQTEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKV 405
            RAE   A K  K+  K ++RSQ+V EVKPWEA  DL+ L  +I+  EIDGL WGE HKLVPVAFG+KKL++ C++VD KV
Sbjct:   83 RAEAAKANK--KEKPKPIERSQVVIEVKPWEAETDLEELAAQIKALEIDGLSWGEGHKLVPVAFGIKKLLVQCIIVDDKV 160
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BLAST of mRNA_H-canaliculatus_F_contig13008.2501.1 vs. uniprot
Match: A0A067CDZ7_SAPPC (EF1_GNE domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CDZ7_SAPPC)

HSP 1 Score: 90.9 bits (224), Expect = 2.390e-20
Identity = 43/75 (57.33%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:  184 AAKAAK-DANKKVDRSQIVFEVKPWEAGADLKGLFDKIRQTEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKV 405
            AAKA+K +  K ++RSQ+V EVKPWEA  DL+ L  KI+  E++GL WGE+HKLVPVAFG+KKL++ C+++D  V
Sbjct:   77 AAKASKKEKAKPIERSQVVIEVKPWEAETDLEALAIKIKALEVNGLTWGESHKLVPVAFGIKKLLVQCIIIDELV 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13008.2501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM77_ECTSI2.450e-4780.99Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A6H5JFV9_9PHAE1.660e-3569.35EF1_GNE domain-containing protein n=3 Tax=Ectocarp... [more]
A0A6H5KBH2_9PHAE4.580e-3582.72EF1_GNE domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835ZFP2_9STRA2.030e-2359.76EF-1 guanine nucleotide exchange domain-containing... [more]
A0A6G0WJF4_9STRA2.210e-2258.75EF1_GNE domain-containing protein n=1 Tax=Aphanomy... [more]
A0A6G0WMX9_9STRA2.500e-2257.50EF1_GNE domain-containing protein n=1 Tax=Aphanomy... [more]
A0A835Z3J2_9STRA5.380e-2264.55Lysine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
A0A485LAV1_9STRA4.770e-2157.50Aste57867_18076 protein n=1 Tax=Aphanomyces stella... [more]
A0A485L9S1_9STRA5.290e-2158.75Aste57867_18212 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CDZ7_SAPPC2.390e-2057.33EF1_GNE domain-containing protein n=1 Tax=Saproleg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13008contigH-canaliculatus_F_contig13008:2301..3012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.7
Seed ortholog evalue5.8e-41
Seed eggNOG ortholog2880.D8LM77
Preferred nameCARS
KEGG rclassRC00055,RC00523
KEGG koko:K01866,ko:K01868,ko:K01873,ko:K01875,ko:K01883,ko:K03232,ko:K04567,ko:K15410
KEGG ReactionR02918,R03650,R03658,R03662,R03663,R03665,R08218
KEGG Pathwayko00970,ko05168,map00970,map05168
KEGG ModuleM00359,M00360
GOsGO:0000049,GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005853,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006414,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.lysyl-tRNA aminoacylation
EggNOG OGsCOG1190@1,COG2092@1,KOG1668@2759,KOG1885@2759
EC6.1.1.1,6.1.1.11,6.1.1.16,6.1.1.3,6.1.1.6,6.1.1.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioneukaryotic elongation factor-1 B beta
Ec32 orthologEc-18_002310.1
Exons2
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929034.8754742-CDS-H-canaliculatus_F_contig13008:2300..25241622929034.8754742-CDS-H-canaliculatus_F_contig13008:2300..2524Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13008 2301..2524 +
1696845655.6156235-CDS-H-canaliculatus_F_contig13008:2300..25241696845655.6156235-CDS-H-canaliculatus_F_contig13008:2300..2524Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13008 2301..2524 +
1622929034.8980837-CDS-H-canaliculatus_F_contig13008:2831..30121622929034.8980837-CDS-H-canaliculatus_F_contig13008:2831..3012Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13008 2832..3012 +
1696845655.6310859-CDS-H-canaliculatus_F_contig13008:2831..30121696845655.6310859-CDS-H-canaliculatus_F_contig13008:2831..3012Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13008 2832..3012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13008.2501.1prot_H-canaliculatus_F_contig13008.2501.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13008 2301..3012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13008.2501.1

>prot_H-canaliculatus_F_contig13008.2501.1 ID=prot_H-canaliculatus_F_contig13008.2501.1|Name=mRNA_H-canaliculatus_F_contig13008.2501.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=135bp
AAAVEKKGKKAAPAAVKSRAVEPVGGDDDVDSLFGDDDEEEAGAGAGAGA
AAPASRAEQMAAAKAAKDANKKVDRSQIVFEVKPWEAGADLKGLFDKIRQ
TEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKV
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mRNA from alignment at H-canaliculatus_F_contig13008:2301..3012+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13008.2501.1 ID=mRNA_H-canaliculatus_F_contig13008.2501.1|Name=mRNA_H-canaliculatus_F_contig13008.2501.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=712bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13008:2301..3012+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGCGGCCGTCGAGAAGAAGGGGAAGAAGGCCGCTCCGGCAGCGGTCAA
GAGCAGGGCAGTCGAGCCTGTCGGCGGTGACGACGATGTGGACAGCTTGT
TCGGGGACGACGATGAGGAGGAGGCGGGGGCGGGGGCAGGAGCGGGCGCC
GCAGCGCCGGCGAGCCGAGCGGAGCAGATGGCCGCGGCGAAGGCTGCCAA
GGACGCCAACAAGAAGGTCGACAGGTGAAAAGCCGCTGTGGTGTGTGGGG
AGGCGCCTTGTTTCTGTTTGGCCCTTGGCAGCACGCGTAGTCTCCCATGT
GTGGTTGCGTGAGTGTGGTGAGCCCGCTGAGTTATGATGGGCGCGATTTG
TGGAATAGAGTATTGTATTGATGTCGCAACAATCCTCGAGATATGGCACA
CGAAACGCCACAGGTCAACAGCGGGTGCTACGGCCACTCTACCGCAGCGG
AGATTCGCAGGTGTTAGTCGAGAGCCCTCCGCAGCCCGCGTCACCTCTCG
TCGCATGAAATCGCCTGCTTCGTAACACCAGGTCCCAGATTGTGTTCGAG
GTGAAGCCTTGGGAGGCTGGAGCCGACCTGAAGGGTCTGTTCGACAAGAT
TAGGCAGACGGAGATCGACGGGCTCGTGTGGGGAGAGGCCCACAAGCTGG
TACCCGTAGCCTTTGGCGTGAAGAAGCTGGTCTTGTCGTGCGTGGTCGTC
GACTCGAAGGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13008:2301..3012+

>mRNA_H-canaliculatus_F_contig13008.2501.1 ID=mRNA_H-canaliculatus_F_contig13008.2501.1|Name=mRNA_H-canaliculatus_F_contig13008.2501.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=810bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13008:2301..3012+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGCGGCCGTCGAGAAGAAGGGGAAGAAGGCCGCTCCGGCAGCGGTCAA
GAGCAGGGCAGTCGAGCCTGTCGGCGGTGACGACGATGTGGACAGCTTGT
TCGGGGACGACGATGAGGAGGAGGCGGGGGCGGGGGCAGGAGCGGGCGCC
GCAGCGCCGGCGAGCCGAGCGGAGCAGATGGCCGCGGCGAAGGCTGCCAA
GGACGCCAACAAGAAGGTCGACAGGCCGCGGCCGTCGAGAAGAAGGGGAA
GAAGGCCGCTCCGGCAGCGGTCAAGAGCAGGGCAGTCGAGCCTGTCGGCG
GTGACGACGATGTGGACAGCTTGTTCGGGGACGACGATGAGGAGGAGGCG
GGGGCGGGGGCAGGAGCGGGCGCCGCAGCGCCGGCGAGCCGAGCGGAGCA
GATGGCCGCGGCGAAGGCTGCCAAGGACGCCAACAAGAAGGTCGACAGGT
CCCAGATTGTGTTCGAGGTGAAGCCTTGGGAGGCTGGAGCCGACCTGAAG
GGTCTGTTCGACAAGATTAGGCAGACGGAGATCGACGGGCTCGTGTGGGG
AGAGGCCCACAAGCTGGTACCCGTAGCCTTTGGCGTGAAGAAGCTGGTCT
TGTCGTGCGTGGTCGTCGACTCGAAGGTAGTCCCAGATTGTGTTCGAGGT
GAAGCCTTGGGAGGCTGGAGCCGACCTGAAGGGTCTGTTCGACAAGATTA
GGCAGACGGAGATCGACGGGCTCGTGTGGGGAGAGGCCCACAAGCTGGTA
CCCGTAGCCTTTGGCGTGAAGAAGCTGGTCTTGTCGTGCGTGGTCGTCGA
CTCGAAGGTA
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