mRNA_H-canaliculatus_F_contig13.2478.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13.2478.1
Unique NamemRNA_H-canaliculatus_F_contig13.2478.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13.2478.1 vs. uniprot
Match: A0A6H5LD10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD10_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.470e-15
Identity = 46/97 (47.42%), Postives = 57/97 (58.76%), Query Frame = 3 
Query:  588 PLPFWKS---WGGGGGSSDIEEGRGTKVTASRST---------DAAPSTGESVGYQCQICLDDRPAEEGFALSACGHTFCRACLEAYVANKVNDGQV 842
            PLP W S   WG  G  S+  EG+   + A             ++  +TG +  Y CQICLDDRPAE GF LSACGH FCR CL+AYV +K+ND +V
Sbjct:   87 PLPKWSSLQFWGTNGPGSEGGEGKVGDLAARDGAGDGGMYLGAESTATTGANRTYHCQICLDDRPAEAGFVLSACGHLFCRECLKAYVTSKINDAEV 183
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BLAST of mRNA_H-canaliculatus_F_contig13.2478.1 vs. uniprot
Match: D7FNI4_ECTSI (Predicted E3 ubiquitin ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI4_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.890e-9
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  723 QICLDDRPAEEGFALSACGHTFCRACLEAYVANKVNDGQ 839
            +ICLDDRPAE GF LSACGH FCR CL+AYV +K+ND +
Sbjct:    4 EICLDDRPAEAGFVLSACGHVFCRECLKAYVTSKINDAE 42
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BLAST of mRNA_H-canaliculatus_F_contig13.2478.1 vs. uniprot
Match: A0A836CCT7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCT7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 8.700e-6
Identity = 35/84 (41.67%), Postives = 42/84 (50.00%), Query Frame = 3 
Query:  615 GGGGSSDIEEGRGTKVTA-------SRSTDAAPSTGESVGYQCQICLD-DRPAEEGFALSACGHTFCRACLEAYVANKVNDGQV 842
            G G S  I  G  T +         S S   A + G S  Y CQIC +  R  +  F LSACGHTFC AC+  Y++ KV DGQ 
Sbjct:   42 GAGLSRQISNGLSTAICTLSNGTITSFSNGGALTPGGSDLYYCQICFEYARRGDAAFTLSACGHTFCHACVREYISKKVVDGQT 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13.2478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LD10_9PHAE1.470e-1547.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNI4_ECTSI1.890e-971.79Predicted E3 ubiquitin ligase n=1 Tax=Ectocarpus s... [more]
A0A836CCT7_9STRA8.700e-641.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13contigH-canaliculatus_F_contig13:937..2428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue3.6e-09
Seed eggNOG ortholog2880.D7FNI4
KEGG koko:K11975,ko:K19306
EggNOG free text desc.ubiquitin conjugating enzyme binding
EggNOG OGsKOG1815@1,KOG1815@2759
EC2.1.1.309,2.3.2.31
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size1151
Cds size957
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13.2478.1prot_H-canaliculatus_F_contig13.2478.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13 1003..2300 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929029.348041-UTR-H-canaliculatus_F_contig13:936..10021622929029.348041-UTR-H-canaliculatus_F_contig13:936..1002Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13 937..1002 -
1696845653.425138-UTR-H-canaliculatus_F_contig13:936..10021696845653.425138-UTR-H-canaliculatus_F_contig13:936..1002Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13 937..1002 -
1622929029.3899524-UTR-H-canaliculatus_F_contig13:2300..24281622929029.3899524-UTR-H-canaliculatus_F_contig13:2300..2428Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13 2301..2428 -
1696845653.4600644-UTR-H-canaliculatus_F_contig13:2300..24281696845653.4600644-UTR-H-canaliculatus_F_contig13:2300..2428Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13 2301..2428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929029.3626087-CDS-H-canaliculatus_F_contig13:1002..13621622929029.3626087-CDS-H-canaliculatus_F_contig13:1002..1362Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13 1003..1362 -
1696845653.439753-CDS-H-canaliculatus_F_contig13:1002..13621696845653.439753-CDS-H-canaliculatus_F_contig13:1002..1362Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13 1003..1362 -
1622929029.376668-CDS-H-canaliculatus_F_contig13:1703..23001622929029.376668-CDS-H-canaliculatus_F_contig13:1703..2300Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13 1704..2300 -
1696845653.4512126-CDS-H-canaliculatus_F_contig13:1703..23001696845653.4512126-CDS-H-canaliculatus_F_contig13:1703..2300Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13 1704..2300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13.2478.1

>prot_H-canaliculatus_F_contig13.2478.1 ID=prot_H-canaliculatus_F_contig13.2478.1|Name=mRNA_H-canaliculatus_F_contig13.2478.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=319bp
MENSLLRTSLLVALLRARRGGPPLLALLQLPAATRRCCCFCCFCCRVFSA
ASCWFSWQQRRRGEQLLRWRRERGGGLWWWTATTLPAMSSTRSGADVGRG
TSTSTSNTSSISSATDSPFERFAAAAAAPATAVAGAAPVSTARQSGVDLT
ESWPLPFWKSWGGGGGSSDIEEGRGTKVTASRSTDAAPSTGESVGYQCQI
CLDDRPAEEGFALSACGHTFCRACLEAYVANKVNDGQVRGGGPGKSPVAS
CRHRSAVNASHRNASLQASRVLARCPNGEAVKRRRRPALARVLPRRLLCT
RTKVARALGCTGQDGVRV*
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mRNA from alignment at H-canaliculatus_F_contig13:937..2428-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13.2478.1 ID=mRNA_H-canaliculatus_F_contig13.2478.1|Name=mRNA_H-canaliculatus_F_contig13.2478.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1492bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13:937..2428- (Hapterophycus canaliculatus Oshoro5f female)
TGCGGCTTGCAACCCGCCACGGGTACCGCTGCGTGATGGCGGTGGAATTC
CTCCGCATAGGGTGGGCGTTCCCCCTGCGGACATGGCGACGATGGCTCCA
CGGCTGACGTGCGGCTGGCGCTTGCCTCATGGAAAACTCACTCCTTCGAA
CCTCGCTCCTCGTTGCCTTGCTCCGTGCACGTAGGGGTGGTCCTCCTCTC
CTGGCGCTGCTGCAGCTACCTGCAGCTACCCGCCGCTGCTGCTGCTTCTG
CTGCTTTTGTTGCCGCGTCTTCTCCGCTGCCTCCTGTTGGTTTTCGTGGC
AGCAACGGCGGCGCGGAGAGCAGCTTTTGCGCTGGCGGCGGGAACGCGGT
GGCGGTCTCTGGTGGTGGACTGCCACAACGCTTCCGGCTATGAGCAGCAC
AAGGAGCGGCGCCGATGTTGGCCGCGGCACCAGCACCAGCACCAGCAACA
CCAGCAGCATCAGCAGCGCCACAGACAGCCCGTTTGAACGCTTTGCTGCT
GCTGCTGCTGCTCCTGCTACCGCTGTTGCTGGCGCCGCGCCCGTGTCCAC
GGCTCGGCAGTCTGGCGTCGATCTCACGGAGTCTTGGCCACTGCCGTTTT
GGAAGAGTTGGGGGGGCGGCGGCGGGAGCTCGGACATCGAGGAAGGCAGG
GGCACAAAAGTGACTGCCTCGAGGTCGACAGACGCGGCTCCAAGTACGGG
AGAAAGTGTGGGGTACCAATGCCAGGTGAAGCGAGGTTGGGGGCGACCGT
TGTCTAGAAGGAAACGTTCCGGCTGCCGCGACGCTTCGAGGCGCTCGAAA
GAGGAAAGGAAGGGGGCGACGGGGTGGGCGGGATGCGGACGGGCGAGGAG
ACAGCACAGGACGCAGCGGCTGGTGTTGAGCACGTGTCGCTGGAAAGCCG
CCCTCAAACTTTCGCTGACGAGCGAAGATCGCTTTTCGATTGAAAAAAGC
TCCCGATTCTTGTCTTCCACCCGCTGCCCCTTCGAGGAAGGAAAAGTCTT
CATCGCGTGTTCACCGTGGTCCGTACGCCCTCTCTGTGCCGAAACGTTCA
ACAACCCGCGAATCAGATTTGCTTGGACGACCGCCCGGCAGAGGAGGGTT
TCGCTCTCTCCGCGTGCGGCCACACCTTCTGCCGGGCGTGCTTGGAGGCC
TACGTCGCCAACAAGGTTAACGACGGGCAGGTGAGGGGTGGTGGGCCTGG
GAAATCCCCGGTAGCGTCGTGCCGCCATCGGTCGGCCGTGAACGCGAGTC
ATCGGAACGCGAGTCTTCAGGCATCGCGGGTGCTTGCTCGGTGCCCAAAC
GGTGAAGCAGTGAAAAGGAGGCGGCGTCCCGCGCTGGCCCGTGTGTTGCC
AAGGCGCTTGCTCTGTACGCGGACTAAGGTGGCGCGAGCTTTGGGGTGCA
CCGGCCAAGATGGAGTGCGTGTGTGATCGGCAGTCGGGGAAGGTTTGGCG
TCCCTTCCAAAGGTTTTGCCTCGGGAGCTTAGGGAAGAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13:937..2428-

>mRNA_H-canaliculatus_F_contig13.2478.1 ID=mRNA_H-canaliculatus_F_contig13.2478.1|Name=mRNA_H-canaliculatus_F_contig13.2478.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1914bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13:937..2428- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAAACTCACTCCTTCGAACCTCGCTCCTCGTTGCCTTGCTCCGTGC
ACGTAGGGGTGGTCCTCCTCTCCTGGCGCTGCTGCAGCTACCTGCAGCTA
CCCGCCGCTGCTGCTGCTTCTGCTGCTTTTGTTGCCGCGTCTTCTCCGCT
GCCTCCTGTTGGTTTTCGTGGCAGCAACGGCGGCGCGGAGAGCAGCTTTT
GCGCTGGCGGCGGGAACGCGGTGGCGGTCTCTGGTGGTGGACTGCCACAA
CGCTTCCGGCTATGAGCAGCACAAGGAGCGGCGCCGATGTTGGCCGCGGC
ACCAGCACCAGCACCAGCAACACCAGCAGCATCAGCAGCGCCACAGACAG
CCCGTTTGAACGCTTTGCTGCTGCTGCTGCTGCTCCTGCTACCGCTGTTG
CTGGCGCCGCGCCCGTGTCCACGGCTCGGCAGTCTGGCGTCGATCTCACG
GAGTCTTGGCCACTGCCGTTTTGGAAGAGTTGGGGGGGCGGCGGCGGGAG
CTCGGACATCGAGGAAGGCAGGGGCACAAAAGTGACTGCCTCGAGGTCGA
CAGACGCGGCTCCAAGTACGGGAGAAAGTGTGGGGTACCAATGCCAGATG
GAAAACTCACTCCTTCGAACCTCGCTCCTCGTTGCCTTGCTCCGTGCACG
TAGGGGTGGTCCTCCTCTCCTGGCGCTGCTGCAGCTACCTGCAGCTACCC
GCCGCTGCTGCTGCTTCTGCTGCTTTTGTTGCCGCGTCTTCTCCGCTGCC
TCCTGTTGGTTTTCGTGGCAGCAACGGCGGCGCGGAGAGCAGCTTTTGCG
CTGGCGGCGGGAACGCGGTGGCGGTCTCTGGTGGTGGACTGCCACAACGC
TTCCGGCTATGAGCAGCACAAGGAGCGGCGCCGATGTTGGCCGCGGCACC
AGCACCAGCACCAGCAACACCAGCAGCATCAGCAGCGCCACAGACAGCCC
GTTTGAACGCTTTGCTGCTGCTGCTGCTGCTCCTGCTACCGCTGTTGCTG
GCGCCGCGCCCGTGTCCACGGCTCGGCAGTCTGGCGTCGATCTCACGGAG
TCTTGGCCACTGCCGTTTTGGAAGAGTTGGGGGGGCGGCGGCGGGAGCTC
GGACATCGAGGAAGGCAGGGGCACAAAAGTGACTGCCTCGAGGTCGACAG
ACGCGGCTCCAAGTACGGGAGAAAGTGTGGGGTACCAATGCCAGATTTGC
TTGGACGACCGCCCGGCAGAGGAGGGTTTCGCTCTCTCCGCGTGCGGCCA
CACCTTCTGCCGGGCGTGCTTGGAGGCCTACGTCGCCAACAAGGTTAACG
ACGGGCAGGTGAGGGGTGGTGGGCCTGGGAAATCCCCGGTAGCGTCGTGC
CGCCATCGGTCGGCCGTGAACGCGAGTCATCGGAACGCGAGTCTTCAGGC
ATCGCGGGTGCTTGCTCGGTGCCCAAACGGTGAAGCAGTGAAAAGGAGGC
GGCGTCCCGCGCTGGCCCGTGTGTTGCCAAGGCGCTTGCTCTGTACGCGG
ACTAAGGTGGCGCGAGCTTTGGGGTGCACCGGCCAAGATGGAGTGCGTGT
GTGAATTTGCTTGGACGACCGCCCGGCAGAGGAGGGTTTCGCTCTCTCCG
CGTGCGGCCACACCTTCTGCCGGGCGTGCTTGGAGGCCTACGTCGCCAAC
AAGGTTAACGACGGGCAGGTGAGGGGTGGTGGGCCTGGGAAATCCCCGGT
AGCGTCGTGCCGCCATCGGTCGGCCGTGAACGCGAGTCATCGGAACGCGA
GTCTTCAGGCATCGCGGGTGCTTGCTCGGTGCCCAAACGGTGAAGCAGTG
AAAAGGAGGCGGCGTCCCGCGCTGGCCCGTGTGTTGCCAAGGCGCTTGCT
CTGTACGCGGACTAAGGTGGCGCGAGCTTTGGGGTGCACCGGCCAAGATG
GAGTGCGTGTGTGA
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