mRNA_H-canaliculatus_F_contig12986.2472.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12986.2472.1
Unique NamemRNA_H-canaliculatus_F_contig12986.2472.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12986.2472.1 vs. uniprot
Match: A0A6H5L1A3_9PHAE (CTP synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A3_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 8.500e-40
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 QVGGTVGDIESSVFLEALRQFQFRVGRERMSLVHVTLVPVLGSVGEQKTKPTQQTVRELRSVGLHPDVICCR 216
            +VGGTVGDIESSVFLEALRQFQFRVGRERMSLVHVTLVPVLGSVGEQKTKPTQQTVRELRSVGLHPDVICCR
Sbjct:  172 EVGGTVGDIESSVFLEALRQFQFRVGRERMSLVHVTLVPVLGSVGEQKTKPTQQTVRELRSVGLHPDVICCR 243
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BLAST of mRNA_H-canaliculatus_F_contig12986.2472.1 vs. uniprot
Match: D7G6L2_ECTSI (CTP synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L2_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 4.170e-39
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 QVGGTVGDIESSVFLEALRQFQFRVGRERMSLVHVTLVPVLGSVGEQKTKPTQQTVRELRSVGLHPDVICCR 216
            +VGGTVGDIESSVFLEALRQFQFRVGRERMSLVHVTLVPVLGSVGEQKTKPTQQTVRELRSVGLHPDVICCR
Sbjct:  173 EVGGTVGDIESSVFLEALRQFQFRVGRERMSLVHVTLVPVLGSVGEQKTKPTQQTVRELRSVGLHPDVICCR 244
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BLAST of mRNA_H-canaliculatus_F_contig12986.2472.1 vs. uniprot
Match: A0A835Z0Y6_9STRA (CTP synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Y6_9STRA)

HSP 1 Score: 130 bits (327), Expect = 6.470e-34
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    1 QVGGTVGDIESSVFLEALRQFQFRVGRERMSLVHVTLVPVLGSVGEQKTKPTQQTVRELRSVGLHPDVICCR 216
            +VGGTVGDIES VFLEALRQFQFRVG+E M LVHV+LVPVLGSVGEQKTKPTQ  VRELRSVGLHPDVICCR
Sbjct:  146 EVGGTVGDIESMVFLEALRQFQFRVGQENMCLVHVSLVPVLGSVGEQKTKPTQHGVRELRSVGLHPDVICCR 217
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BLAST of mRNA_H-canaliculatus_F_contig12986.2472.1 vs. uniprot
Match: W7TKH0_9STRA (CTP synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKH0_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.410e-30
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    1 QVGGTVGDIESSVFLEALRQFQFRVGRERMSLVHVTLVPVLGSVGEQKTKPTQQTVRELRSVGLHPDVICCR 216
            +VGGTVGDIESSVFLEALRQFQFRVGRE   L+ V+LVPVLGSVGEQKTKPTQ  V+ELRSVGL PDVI CR
Sbjct:   97 EVGGTVGDIESSVFLEALRQFQFRVGRENFCLIFVSLVPVLGSVGEQKTKPTQHGVKELRSVGLSPDVIICR 168
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BLAST of mRNA_H-canaliculatus_F_contig12986.2472.1 vs. uniprot
Match: A0A6V8DAU8_9ARCH (CTP_synth_N domain-containing protein (Fragment) n=2 Tax=Candidatus Poseidoniales TaxID=133814 RepID=A0A6V8DAU8_9ARCH)

HSP 1 Score: 111 bits (277), Expect = 5.060e-30
Identity = 50/72 (69.44%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    1 QVGGTVGDIESSVFLEALRQFQFRVGRERMSLVHVTLVPVLGSVGEQKTKPTQQTVRELRSVGLHPDVICCR 216
            ++GGTVGDIES+ ++EALRQFQFRVGRE ++ VHV+LVPV+G VGEQKTKPTQ TV+ELR +G+ PD++ CR
Sbjct:   16 ELGGTVGDIESAPYVEALRQFQFRVGRENVTFVHVSLVPVMGPVGEQKTKPTQHTVKELRGLGITPDILVCR 87
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BLAST of mRNA_H-canaliculatus_F_contig12986.2472.1 vs. uniprot
Match: A0A662XT36_9STRA (CTP synthase (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XT36_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.030e-29
Identity = 58/72 (80.56%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:    1 QVGGTVGDIESSVFLEALRQFQFRVGRERMSLVHVTLVPVLGSVGEQKTKPTQQTVRELRSVGLHPDVICCR 216
            +VGGTVGDIES VFLEALRQFQFRVG E   LVHV+LVPVLGSVGEQKTKPTQ  ++ELRS GL PDVI CR
Sbjct:  155 EVGGTVGDIESMVFLEALRQFQFRVGPENFCLVHVSLVPVLGSVGEQKTKPTQHAIKELRSAGLTPDVIICR 226
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BLAST of mRNA_H-canaliculatus_F_contig12986.2472.1 vs. uniprot
Match: A0A7S2WHY8_9STRA (CTP synthase n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WHY8_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.510e-29
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    1 QVGGTVGDIESSVFLEALRQFQFRVGRERMSLVHVTLVPVLGSVGEQKTKPTQQTVRELRSVGLHPDVICCR 216
            +VGGTVGDIES VFLEA+RQFQFRVGRER  LVHV+L+PVLGSVGEQKTKPTQ  V+EL S+GL PD+I CR
Sbjct:  180 EVGGTVGDIESMVFLEAIRQFQFRVGRERCCLVHVSLIPVLGSVGEQKTKPTQHGVKELMSLGLSPDIIVCR 251
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BLAST of mRNA_H-canaliculatus_F_contig12986.2472.1 vs. uniprot
Match: F0WNB6_9STRA (CTP synthase n=2 Tax=Albugo TaxID=65356 RepID=F0WNB6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.730e-29
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    1 QVGGTVGDIESSVFLEALRQFQFRVGRERMSLVHVTLVPVLGSVGEQKTKPTQQTVRELRSVGLHPDVICCR 216
            +VGGTVGDIES VFLEALRQFQFRVG +   LVHV+LVPVLGSVGEQKTKPTQ  ++ELRSVGL PDVI CR
Sbjct:  150 EVGGTVGDIESMVFLEALRQFQFRVGVDNFCLVHVSLVPVLGSVGEQKTKPTQHAIKELRSVGLSPDVIICR 221
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BLAST of mRNA_H-canaliculatus_F_contig12986.2472.1 vs. uniprot
Match: K3WHP8_GLOUD (CTP synthase n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WHP8_GLOUD)

HSP 1 Score: 117 bits (294), Expect = 2.740e-29
Identity = 58/72 (80.56%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:    1 QVGGTVGDIESSVFLEALRQFQFRVGRERMSLVHVTLVPVLGSVGEQKTKPTQQTVRELRSVGLHPDVICCR 216
            +VGGTVGDIES VFLEALRQFQFRVG E   LVHV+LVPVLGSVGEQKTKPTQ  ++ELRS GL PDVI CR
Sbjct:  151 EVGGTVGDIESMVFLEALRQFQFRVGPENFCLVHVSLVPVLGSVGEQKTKPTQHAIKELRSAGLSPDVIICR 222
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BLAST of mRNA_H-canaliculatus_F_contig12986.2472.1 vs. uniprot
Match: H3G978_PHYRM (CTP synthase n=30 Tax=Peronosporaceae TaxID=4777 RepID=H3G978_PHYRM)

HSP 1 Score: 117 bits (294), Expect = 2.810e-29
Identity = 58/72 (80.56%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:    1 QVGGTVGDIESSVFLEALRQFQFRVGRERMSLVHVTLVPVLGSVGEQKTKPTQQTVRELRSVGLHPDVICCR 216
            +VGGTVGDIES VFLEALRQFQFRVG E   LVHV+LVPVLGSVGEQKTKPTQ  ++ELRS GL PDVI CR
Sbjct:  155 EVGGTVGDIESMVFLEALRQFQFRVGPENFCLVHVSLVPVLGSVGEQKTKPTQHAIKELRSAGLSPDVIICR 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12986.2472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1A3_9PHAE8.500e-4098.61CTP synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G6L2_ECTSI4.170e-3998.61CTP synthase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A835Z0Y6_9STRA6.470e-3488.89CTP synthase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
W7TKH0_9STRA4.410e-3083.33CTP synthase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A6V8DAU8_9ARCH5.060e-3069.44CTP_synth_N domain-containing protein (Fragment) n... [more]
A0A662XT36_9STRA1.030e-2980.56CTP synthase (Fragment) n=1 Tax=Nothophytophthora ... [more]
A0A7S2WHY8_9STRA2.510e-2979.17CTP synthase n=1 Tax=labyrinthulid quahog parasite... [more]
F0WNB6_9STRA2.730e-2980.56CTP synthase n=2 Tax=Albugo TaxID=65356 RepID=F0WN... [more]
K3WHP8_GLOUD2.740e-2980.56CTP synthase n=2 Tax=Pythiaceae TaxID=4782 RepID=K... [more]
H3G978_PHYRM2.810e-2980.56CTP synthase n=30 Tax=Peronosporaceae TaxID=4777 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12986contigH-canaliculatus_F_contig12986:2692..2907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue2.6e-32
Seed eggNOG ortholog2880.D7G6L2
Preferred nameCTPS2
KEGG rclassRC00010,RC00074
KEGG koko:K01937
KEGG ReactionR00571,R00573
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00052
GOsGO:0000322,GO:0000323,GO:0000324,GO:0001775,GO:0002164,GO:0002376,GO:0002520,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006629,GO:0006644,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0008610,GO:0008654,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009791,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0030097,GO:0032501,GO:0032502,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0035166,GO:0035167,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046112,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0048513,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097268,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.'de novo' CTP biosynthetic process
EggNOG OGsCOG0504@1,KOG2387@2759
EC6.3.4.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.9186041-CDS-H-canaliculatus_F_contig12986:2691..29071622929027.9186041-CDS-H-canaliculatus_F_contig12986:2691..2907Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12986 2692..2907 +
1696845653.020394-CDS-H-canaliculatus_F_contig12986:2691..29071696845653.020394-CDS-H-canaliculatus_F_contig12986:2691..2907Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12986 2692..2907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12986.2472.1prot_H-canaliculatus_F_contig12986.2472.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12986 2692..2907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12986.2472.1

>prot_H-canaliculatus_F_contig12986.2472.1 ID=prot_H-canaliculatus_F_contig12986.2472.1|Name=mRNA_H-canaliculatus_F_contig12986.2472.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=72bp
QVGGTVGDIESSVFLEALRQFQFRVGRERMSLVHVTLVPVLGSVGEQKTK
PTQQTVRELRSVGLHPDVICCR
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mRNA from alignment at H-canaliculatus_F_contig12986:2692..2907+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12986.2472.1 ID=mRNA_H-canaliculatus_F_contig12986.2472.1|Name=mRNA_H-canaliculatus_F_contig12986.2472.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=216bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12986:2692..2907+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTCGGCGGCACCGTGGGCGACATCGAGTCCTCGGTGTTCCTGGAGGC
CCTGAGGCAGTTCCAGTTCCGGGTCGGGCGCGAGAGGATGTCCCTGGTGC
ACGTGACGCTCGTGCCGGTGTTGGGGAGCGTGGGGGAGCAGAAGACGAAG
CCGACGCAGCAGACGGTCCGGGAGCTGCGGTCGGTGGGGCTGCACCCAGA
CGTTATCTGTTGCAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12986:2692..2907+

>mRNA_H-canaliculatus_F_contig12986.2472.1 ID=mRNA_H-canaliculatus_F_contig12986.2472.1|Name=mRNA_H-canaliculatus_F_contig12986.2472.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=432bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12986:2692..2907+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTCGGCGGCACCGTGGGCGACATCGAGTCCTCGGTGTTCCTGGAGGC
CCTGAGGCAGTTCCAGTTCCGGGTCGGGCGCGAGAGGATGTCCCTGGTGC
ACGTGACGCTCGTGCCGGTGTTGGGGAGCGTGGGGGAGCAGAAGACGAAG
CCGACGCAGCAGACGGTCCGGGAGCTGCGGTCGGTGGGGCTGCACCCAGA
CGTTATCTGTTGCAGGCAGGTCGGCGGCACCGTGGGCGACATCGAGTCCT
CGGTGTTCCTGGAGGCCCTGAGGCAGTTCCAGTTCCGGGTCGGGCGCGAG
AGGATGTCCCTGGTGCACGTGACGCTCGTGCCGGTGTTGGGGAGCGTGGG
GGAGCAGAAGACGAAGCCGACGCAGCAGACGGTCCGGGAGCTGCGGTCGG
TGGGGCTGCACCCAGACGTTATCTGTTGCAGG
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