mRNA_H-canaliculatus_F_contig12957.2457.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12957.2457.1
Unique NamemRNA_H-canaliculatus_F_contig12957.2457.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12957.2457.1 vs. uniprot
Match: D8LF91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF91_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.380e-26
Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = 2 
Query:    2 KVMAGISSDDPPDSQWISLEKTDRKTGRKNPMGKCLIGIQIFPVDKAEAQPAGIGR 169
            KVMAGIS+DDPPDSQWISLEKTDRKTG+K PMGKCLIGIQI+P+DKAEAQPAG G+
Sbjct: 1642 KVMAGISNDDPPDSQWISLEKTDRKTGKKTPMGKCLIGIQIYPLDKAEAQPAGFGQ 1697
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BLAST of mRNA_H-canaliculatus_F_contig12957.2457.1 vs. uniprot
Match: A0A6H5JL55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL55_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.580e-26
Identity = 51/58 (87.93%), Postives = 56/58 (96.55%), Query Frame = 2 
Query:    2 KVMAGISSDDPPDSQWISLEKTDRKTGRK-NPMGKCLIGIQIFPVDKAEAQPAGIGRA 172
            KVMAGIS+DDPPDSQWISLEKTDRKTG+K  PMGKCLIGIQI+P+DKAEAQPAG+GRA
Sbjct: 2050 KVMAGISNDDPPDSQWISLEKTDRKTGKKVTPMGKCLIGIQIYPLDKAEAQPAGLGRA 2107
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BLAST of mRNA_H-canaliculatus_F_contig12957.2457.1 vs. uniprot
Match: D8LF87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF87_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.080e-14
Identity = 30/56 (53.57%), Postives = 44/56 (78.57%), Query Frame = 2 
Query:    2 KVMAGISSDDPPDSQWISLEKTDRKTGRKNPMGKCLIGIQIFPVDKAEAQPAGIGR 169
            K M G+  DDP +S W+++E+T+ +TG+K  MGKCL+G+QI+P++KAE QP G GR
Sbjct: 2104 KNMTGLWDDDPDESYWLNMERTNYETGQKEQMGKCLMGVQIWPIEKAELQPVGNGR 2159
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BLAST of mRNA_H-canaliculatus_F_contig12957.2457.1 vs. uniprot
Match: A0A7S3XX73_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX73_HETAK)

HSP 1 Score: 71.6 bits (174), Expect = 2.430e-14
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 2 
Query:    2 KVMAGISSDDPPDSQWISLEKTDRKTGRKNPMGKCLIGIQIFPVDKAEAQPAGIGRA 172
            K  AG+   DPP+S+W++LEKTD  TG K  MGK  + I I+P D+A AQP G GR+
Sbjct:   34 KSFAGLGDSDPPNSKWMTLEKTDHNTGTKQQMGKVCLSISIYPKDQANAQPVGFGRS 90
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BLAST of mRNA_H-canaliculatus_F_contig12957.2457.1 vs. uniprot
Match: A0A418BA36_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418BA36_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.660e-8
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 2 
Query:    2 KVMAGISSDDPPDSQWISLEKTDRKTGRKNPMGKCLIGIQIFPVDKAEAQPAGIGRA 172
            K   G+   DP DS WI +E+ +R+T  K PMG   I +++ P+DKA+ Q  G GR+
Sbjct:  983 KEATGLWDTDPTDSTWIKMERLNRETNVKEPMGAVCISMELVPIDKAKIQTVGFGRS 1039
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BLAST of mRNA_H-canaliculatus_F_contig12957.2457.1 vs. uniprot
Match: A0A024UTA9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTA9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.670e-8
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 2 
Query:    2 KVMAGISSDDPPDSQWISLEKTDRKTGRKNPMGKCLIGIQIFPVDKAEAQPAGIGRA 172
            K   G+   DP DS WI +E+ +R+T  K PMG   I +++ P+DKA+ Q  G GR+
Sbjct: 1657 KEATGLWDTDPTDSTWIKMERLNRETNVKEPMGAVCISMELVPIDKAKIQTVGFGRS 1713
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BLAST of mRNA_H-canaliculatus_F_contig12957.2457.1 vs. uniprot
Match: A0A6A5AKT2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AKT2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.730e-8
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 2 
Query:    2 KVMAGISSDDPPDSQWISLEKTDRKTGRKNPMGKCLIGIQIFPVDKAEAQPAGIGRA 172
            K   G+   DP DS WI +E+ +R+T  K PMG   I +++ PV+KA+ Q  G GR+
Sbjct:  440 KESTGLWDTDPTDSTWIKMERLNRETNVKEPMGAVCISMELVPVEKAKIQAVGFGRS 496
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BLAST of mRNA_H-canaliculatus_F_contig12957.2457.1 vs. uniprot
Match: A0A397C8F1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C8F1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.770e-8
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 2 
Query:    2 KVMAGISSDDPPDSQWISLEKTDRKTGRKNPMGKCLIGIQIFPVDKAEAQPAGIGRA 172
            K   G+   DP DS WI +E+ +R+T  K PMG   I +++ PV+KA+ Q  G GR+
Sbjct:  694 KESTGLWDTDPTDSTWIKMERLNRETNVKEPMGAVCISMELVPVEKAKIQAVGFGRS 750
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12957.2457.1 vs. uniprot
Match: A0A067CD42_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CD42_SAPPC)

HSP 1 Score: 56.6 bits (135), Expect = 6.780e-8
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 2 
Query:    2 KVMAGISSDDPPDSQWISLEKTDRKTGRKNPMGKCLIGIQIFPVDKAEAQPAGIGRA 172
            K   G+   DP DS WI +E+ +R+TG K+PMG   I +++ P++KA+    G GR+
Sbjct:  720 KEATGLFDTDPTDSSWIKMERMNRETGVKDPMGAVCISMELVPIEKAKTIAVGYGRS 776
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12957.2457.1 vs. uniprot
Match: W4GKQ4_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GKQ4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.820e-8
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 2 
Query:    2 KVMAGISSDDPPDSQWISLEKTDRKTGRKNPMGKCLIGIQIFPVDKAEAQPAGIGRA 172
            K   G+   DP DS WI +E+ +R+T  K PMG   I +++ PV+KA+ Q  G GR+
Sbjct: 1674 KESTGLWDTDPTDSTWIKMERLNRETNVKEPMGAVCISMELVPVEKAKIQAVGFGRS 1730
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12957.2457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LF91_ECTSI1.380e-2687.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL55_9PHAE2.580e-2687.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF87_ECTSI2.080e-1453.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XX73_HETAK2.430e-1452.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A418BA36_9STRA2.660e-842.11Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024UTA9_9STRA2.670e-842.11Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6A5AKT2_9STRA6.730e-842.11Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397C8F1_9STRA6.770e-842.11Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A067CD42_SAPPC6.780e-840.35Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
W4GKQ4_9STRA6.820e-842.11Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12957contigH-canaliculatus_F_contig12957:1844..2983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue4.6e-21
Seed eggNOG ortholog2880.D8LF91
KEGG koko:K19949,ko:K22125,ko:K22127
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1326@1,KOG1326@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12957.2457.1prot_H-canaliculatus_F_contig12957.2457.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12957 1844..2976 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929026.17176-CDS-H-canaliculatus_F_contig12957:1843..19271622929026.17176-CDS-H-canaliculatus_F_contig12957:1843..1927Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12957 1844..1927 -
1696845652.1100838-CDS-H-canaliculatus_F_contig12957:1843..19271696845652.1100838-CDS-H-canaliculatus_F_contig12957:1843..1927Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12957 1844..1927 -
1622929026.197079-CDS-H-canaliculatus_F_contig12957:2895..29761622929026.197079-CDS-H-canaliculatus_F_contig12957:2895..2976Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12957 2896..2976 -
1696845652.121523-CDS-H-canaliculatus_F_contig12957:2895..29761696845652.121523-CDS-H-canaliculatus_F_contig12957:2895..2976Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12957 2896..2976 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929026.2172406-UTR-H-canaliculatus_F_contig12957:2976..29831622929026.2172406-UTR-H-canaliculatus_F_contig12957:2976..2983Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12957 2977..2983 -
1696845652.1313353-UTR-H-canaliculatus_F_contig12957:2976..29831696845652.1313353-UTR-H-canaliculatus_F_contig12957:2976..2983Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12957 2977..2983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12957.2457.1

>prot_H-canaliculatus_F_contig12957.2457.1 ID=prot_H-canaliculatus_F_contig12957.2457.1|Name=mRNA_H-canaliculatus_F_contig12957.2457.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=55bp
MAGISSDDPPDSQWISLEKTDRKTGRKNPMGKCLIGIQIFPVDKAEAQPA
GIGRA
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mRNA from alignment at H-canaliculatus_F_contig12957:1844..2983-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12957.2457.1 ID=mRNA_H-canaliculatus_F_contig12957.2457.1|Name=mRNA_H-canaliculatus_F_contig12957.2457.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1140bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12957:1844..2983- (Hapterophycus canaliculatus Oshoro5f female)
CAAGGTGATGGCGGGGATAAGCAGCGACGACCCGCCAGACTCGCAGTGGA
TAAGCTTGGAGAAGACCGATAGGAAGACGGGCAGAAAGGTGACTGACCCA
GCATATTGAGATATGCCTTTCTCGCTTCCTTCCTGCGCGCGTTATGTGGT
GGAAATTTGCAGGGCAGAGCGCCCCTGGTTCGCGGCTGCAGCGAGGTCTC
TTTCAATGCCTCCGCCGCTCGGCCTCGTGTTTCCTTTACCCCGCCGCCGC
CGCCGCCGCCGAGCCAGGCCCGAAATTATTGGAGGATTAGGGATGGAAAG
GATCCTTGAGTTTCGTTCTCTTGGTGCCCTTGCGTGCTGGGTTGTGGTGG
ATTGCGGTGATCGCGGTGATCGCGGCGATCGCGGTGGATTGTGGTGGATT
TTTCTCGTCTCCTGCATCCCCCGACGTTAAAGTTTGTGGGCTAAGGGCAA
TGGAGAGAGACCCCAACGTTGAGCAACGTGCACAGCCACAGCTGTTTGAC
AGCCAGGTGTACCTTGACCCATCGGTGTCCGTGGCATACAGGCAACATTT
TCTTGGTGTGATGTGGTGTGGTGTGGTGTGGTGGTGAGGTCGTGCAGCCT
TCGTTTTGTGCACTCCCTGCTTGTTCACCGAGTTGGACAGCACGCAGCAG
TCGGAAGCGCTGCTGTGATGAAAACCCCCCCCCGCCAGTCTAGATGTTTG
GCATCTTTTCCGGGCAAGCCGGGGAAGACTGACCGCGGTTTACCCTCAAC
GGTACGGCGAAGCAAGCGCATTCCTGCTCCCCTGCACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACCACACAGTCGCCACGCGTACG
CCTTGAGCCTCGGTTGCTGCCGCATCTCCCCTCCCCTCAAACCCCTCTGC
TTCCTGCCGGCGTCTGCCGCGCGTTGCGTTGCCGCCGCCCGCCTTCGGAC
CGACAGAACCCCATGGGAAAGTGCCTGATCGGGATCCAGATTTTCCCCGT
GGACAAGGCCGAGGCGCAGCCGGCGGGAATAGGCAGGGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12957:1844..2983-

>mRNA_H-canaliculatus_F_contig12957.2457.1 ID=mRNA_H-canaliculatus_F_contig12957.2457.1|Name=mRNA_H-canaliculatus_F_contig12957.2457.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=330bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12957:1844..2983- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGGGGATAAGCAGCGACGACCCGCCAGACTCGCAGTGGATAAGCTT
GGAGAAGACCGATAGGAAGACGGGCAGAAAGATGGCGGGGATAAGCAGCG
ACGACCCGCCAGACTCGCAGTGGATAAGCTTGGAGAAGACCGATAGGAAG
ACGGGCAGAAAGAACCCCATGGGAAAGTGCCTGATCGGGATCCAGATTTT
CCCCGTGGACAAGGCCGAGGCGCAGCCGGCGGGAATAGGCAGGGCGAACC
CCATGGGAAAGTGCCTGATCGGGATCCAGATTTTCCCCGTGGACAAGGCC
GAGGCGCAGCCGGCGGGAATAGGCAGGGCG
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