mRNA_H-canaliculatus_F_contig12953.2456.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12953.2456.1
Unique NamemRNA_H-canaliculatus_F_contig12953.2456.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12953.2456.1 vs. uniprot
Match: A0A6H5KUQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUQ6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 6.350e-28
Identity = 113/233 (48.50%), Postives = 127/233 (54.51%), Query Frame = 2 
Query:  179 MSTLTDIFKVQDKVSTKKNKEEKEKDKGFKVASLFD-GL-AGAPPTTTARXXXXXXXXXXXXXXXXXXXXXSTVTTLSNGLEGTAAKGGTGEGPPAPETAGGVILSVGGLSSKNPGPVPSLAAAQPLT---------DAAASHDPAASAAVPLSETGK---------VLWRPLSDVVAFAARFVRTGKREDVESAWLGERRALTQDFKRKHKDAVKGRRGAGAGRGAASKKRR 817
            MS LTDIF V+DKVS+KKN+EEK+KDKGFK+ SLFD GL AG        XXXXXXXXXX   XXXXXXXX                                      L      P  SL++              DA     P  +  +P+S              LWRPL +VVA AARF+RTGKREDVE+AW+GERRALTQDFKRKHKDAVKGRRGA  G   ASKKRR
Sbjct:    1 MSALTDIFTVKDKVSSKKNREEKDKDKGFKITSLFDAGLTAGXXXXXXXXXXXXXXXXXXAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLVEGQARPAASLSSXXXXXXXXXXXXXGDAGGESQPGGT--LPVSXXXXXXXXVVVETALWRPLDEVVAIAARFMRTGKREDVEAAWIGERRALTQDFKRKHKDAVKGRRGAAGGGHRASKKRR 231
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BLAST of mRNA_H-canaliculatus_F_contig12953.2456.1 vs. uniprot
Match: D7FS94_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS94_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 3.150e-13
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 2 
Query:  635 LSDVVAFAARFVRTGKREDVESAWLGERRALTQDFKRKHKDAVKGRRGA 781
            L D +A   RF+RTGKREDVE+AWLGERRALTQDFKRKHKDAVKGRRGA
Sbjct:  429 LDDRLAELLRFMRTGKREDVEAAWLGERRALTQDFKRKHKDAVKGRRGA 477
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BLAST of mRNA_H-canaliculatus_F_contig12953.2456.1 vs. uniprot
Match: A0A835YZR3_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.370e-12
Identity = 92/221 (41.63%), Postives = 115/221 (52.04%), Query Frame = 2 
Query:  149 APQGERFVAHMSTLTDIFKVQDKVSTKKNKEEKEKDKGFKVASLFDGLAGAPPTTTARXXXXXXXXXXXXXXXXXXXXXSTVTTLSNGLEGTAAKGGTGEGPPAPETAGGVILSVGGLSSKNPGPVPSLAAAQPLTDAAASHDPAASAAVPLSETGKVLWRPLSDVVAFAARFVRTGKREDVESAWLGERRALTQDFKRKHKDAVKGRRGA---GAGRGAA 802
            AP GERF+A + TLTDIF VQDKV+TK + EEK +  GFK++SLF G           XXXXXXXXXXXXXXXXXX   +TV T + G      KGG  E   + +      L       +    V      +   +         +AA PL      +W  +  + A AA+F R G   ++E  WL  RR LT DFKRKHK+A+K R  A   G  RGAA
Sbjct:  558 APSGERFIARVGTLTDIFSVQDKVTTKLSAEEKARATGFKLSSLFGG-------DXXXXXXXXXXXXXXXXXXXXXAGEATVHTFAFGGIAEDGKGGD-ESKTSKQKR--TALEQAEPQQRRQQRV------EDKENVDVKRGSKGAAAAPLPPAELRIWGDMDAIRARAAQFCRQGTDAEIEERWLQSRRNLTVDFKRKHKEALKSRSVAPTKGRRRGAA 762
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12953.2456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KUQ6_9PHAE6.350e-2848.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS94_ECTSI3.150e-1383.67RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YZR3_9STRA3.370e-1241.63RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12953contigH-canaliculatus_F_contig12953:1005..2245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1225
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12953.2456.1prot_H-canaliculatus_F_contig12953.2456.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12953 1423..2067 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929026.0665855-UTR-H-canaliculatus_F_contig12953:1004..13181622929026.0665855-UTR-H-canaliculatus_F_contig12953:1004..1318Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12953 1005..1318 -
1696845652.0707157-UTR-H-canaliculatus_F_contig12953:1004..13181696845652.0707157-UTR-H-canaliculatus_F_contig12953:1004..1318Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12953 1005..1318 -
1622929026.082302-UTR-H-canaliculatus_F_contig12953:1334..14221622929026.082302-UTR-H-canaliculatus_F_contig12953:1334..1422Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12953 1335..1422 -
1696845652.0795565-UTR-H-canaliculatus_F_contig12953:1334..14221696845652.0795565-UTR-H-canaliculatus_F_contig12953:1334..1422Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12953 1335..1422 -
1622929026.1147745-UTR-H-canaliculatus_F_contig12953:2067..22451622929026.1147745-UTR-H-canaliculatus_F_contig12953:2067..2245Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12953 2068..2245 -
1696845652.1005332-UTR-H-canaliculatus_F_contig12953:2067..22451696845652.1005332-UTR-H-canaliculatus_F_contig12953:2067..2245Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12953 2068..2245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929026.099902-CDS-H-canaliculatus_F_contig12953:1422..20671622929026.099902-CDS-H-canaliculatus_F_contig12953:1422..2067Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12953 1423..2067 -
1696845652.0911431-CDS-H-canaliculatus_F_contig12953:1422..20671696845652.0911431-CDS-H-canaliculatus_F_contig12953:1422..2067Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12953 1423..2067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12953.2456.1

>prot_H-canaliculatus_F_contig12953.2456.1 ID=prot_H-canaliculatus_F_contig12953.2456.1|Name=mRNA_H-canaliculatus_F_contig12953.2456.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=215bp
MSTLTDIFKVQDKVSTKKNKEEKEKDKGFKVASLFDGLAGAPPTTTARAA
AADAGAGFSFAFGGGNGPGSTVTTLSNGLEGTAAKGGTGEGPPAPETAGG
VILSVGGLSSKNPGPVPSLAAAQPLTDAAASHDPAASAAVPLSETGKVLW
RPLSDVVAFAARFVRTGKREDVESAWLGERRALTQDFKRKHKDAVKGRRG
AGAGRGAASKKRRR*
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mRNA from alignment at H-canaliculatus_F_contig12953:1005..2245-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12953.2456.1 ID=mRNA_H-canaliculatus_F_contig12953.2456.1|Name=mRNA_H-canaliculatus_F_contig12953.2456.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1241bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12953:1005..2245- (Hapterophycus canaliculatus Oshoro5f female)
GGAGGCCGGCGGTGGCAGCTTGGCTCCGCTCAAATGGCAAGAAGAGGCGC
AGCAGCAGCAGCAAGAGGGGGGTGGGGGGGTAGACGACGAGAGCATTTCC
GAGGCAGGCCGCGGGGCGGGCCCGGCGGCGGCAGCCGCGGAAGATAAAGC
GCCCCAGGGAGAGCGGTTCGTGGCGCACATGTCGACCCTGACGGACATCT
TCAAGGTGCAGGACAAGGTCAGCACCAAGAAGAACAAGGAGGAGAAGGAG
AAGGATAAGGGCTTCAAGGTCGCCTCGCTCTTCGACGGCCTTGCGGGGGC
GCCCCCGACGACCACGGCACGGGCGGCGGCGGCAGACGCGGGCGCCGGCT
TCTCCTTCGCCTTCGGGGGGGGCAACGGGCCGGGGTCAACGGTGACGACG
CTGTCCAACGGTCTGGAGGGTACGGCGGCCAAGGGCGGCACCGGGGAAGG
ACCGCCAGCGCCGGAAACCGCCGGCGGCGTTATCCTGTCGGTCGGGGGGC
TCAGCAGCAAGAACCCAGGCCCGGTACCCTCTTTGGCGGCGGCGCAGCCT
CTGACGGACGCGGCCGCCAGCCACGACCCAGCCGCTTCCGCTGCGGTGCC
CCTCTCGGAAACGGGGAAGGTACTGTGGCGTCCCCTGAGCGACGTCGTGG
CTTTTGCGGCGCGGTTCGTTAGGACTGGCAAGAGGGAAGACGTGGAGAGC
GCGTGGCTCGGGGAGCGGCGCGCCCTGACACAGGACTTCAAGCGCAAGCA
CAAGGACGCCGTCAAGGGGCGAAGGGGGGCCGGGGCGGGTCGCGGGGCGG
CCTCCAAGAAACGGAGAAGATGAAGCTTGTCTTAAGCTGTCCTGTTTGTG
CCTACTTCAGCAGGAGAGGTCGTGATAATTGCGGTTGGTTTGGTAGCGCC
GTTGTTGAGAGGCAGCTCTGTGGTGAGGGCGGCCGGGGGGGGGGGGGTTA
GGTAGGCCTCGGCAGCCGAGGTTGGGAGAGAACAAAACGAAGGCATTGGG
AGAATCTTCTTTCTCGATCTCGATACCCTTCTGCGCGTGTCGATTGACGA
CACCAGCGATGAACGCATGTGATGTGAATCGTTTCCTCCGGTCGCCCTCA
CTCACATTTAGTACCCAGACCCCGCCGAGAAAGCGCTTCGACCACTTAGG
TAACTGCCTGCGATATACTGTACCCCTTTCTCCTTGATCGTCGTATATCC
CTGTCGCCTCTAAGCTGACCACGCCGACGAAAGAAACAAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12953:1005..2245-

>mRNA_H-canaliculatus_F_contig12953.2456.1 ID=mRNA_H-canaliculatus_F_contig12953.2456.1|Name=mRNA_H-canaliculatus_F_contig12953.2456.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1290bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12953:1005..2245- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGACCCTGACGGACATCTTCAAGGTGCAGGACAAGGTCAGCACCAA
GAAGAACAAGGAGGAGAAGGAGAAGGATAAGGGCTTCAAGGTCGCCTCGC
TCTTCGACGGCCTTGCGGGGGCGCCCCCGACGACCACGGCACGGGCGGCG
GCGGCAGACGCGGGCGCCGGCTTCTCCTTCGCCTTCGGGGGGGGCAACGG
GCCGGGGTCAACGGTGACGACGCTGTCCAACGGTCTGGAGGGTACGGCGG
CCAAGGGCGGCACCGGGGAAGGACCGCCAGCGCCGGAAACCGCCGGCGGC
GTTATCCTGTCGGTCGGGGGGCTCAGCAGCAAGAACCCAGGCCCGGTACC
CTCTTTGGCGGCGGCGCAGCCTCTGACGGACGCGGCCGCCAGCCACGACC
CAGCCGCTTCCGCTGCGGTGCCCCTCTCGGAAACGGGGAAGGTACTGTGG
CGTCCCCTGAGCGACGTCGTGGCTTTTGCGGCGCGGTTCGTTAGGACTGG
CAAGAGGGAAGACGTGGAGAGCGCGTGGCTCGGGGAGCGGCGCGCCCTGA
CACAGGACTTCAAGCGCAAGCACAAGGACGCCGTCAAGGGGCGAAGGGGG
GCCGGGGCGGGTCGCGGGGCGGCCTCCAAGAAACGGAGAAGATGAATGTC
GACCCTGACGGACATCTTCAAGGTGCAGGACAAGGTCAGCACCAAGAAGA
ACAAGGAGGAGAAGGAGAAGGATAAGGGCTTCAAGGTCGCCTCGCTCTTC
GACGGCCTTGCGGGGGCGCCCCCGACGACCACGGCACGGGCGGCGGCGGC
AGACGCGGGCGCCGGCTTCTCCTTCGCCTTCGGGGGGGGCAACGGGCCGG
GGTCAACGGTGACGACGCTGTCCAACGGTCTGGAGGGTACGGCGGCCAAG
GGCGGCACCGGGGAAGGACCGCCAGCGCCGGAAACCGCCGGCGGCGTTAT
CCTGTCGGTCGGGGGGCTCAGCAGCAAGAACCCAGGCCCGGTACCCTCTT
TGGCGGCGGCGCAGCCTCTGACGGACGCGGCCGCCAGCCACGACCCAGCC
GCTTCCGCTGCGGTGCCCCTCTCGGAAACGGGGAAGGTACTGTGGCGTCC
CCTGAGCGACGTCGTGGCTTTTGCGGCGCGGTTCGTTAGGACTGGCAAGA
GGGAAGACGTGGAGAGCGCGTGGCTCGGGGAGCGGCGCGCCCTGACACAG
GACTTCAAGCGCAAGCACAAGGACGCCGTCAAGGGGCGAAGGGGGGCCGG
GGCGGGTCGCGGGGCGGCCTCCAAGAAACGGAGAAGATGA
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