mRNA_H-canaliculatus_F_contig12953.2455.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12953.2455.1
Unique NamemRNA_H-canaliculatus_F_contig12953.2455.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12953.2455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12953contigH-canaliculatus_F_contig12953:9..767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size761
Cds size615
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929025.9967744-UTR-H-canaliculatus_F_contig12953:8..1521622929025.9967744-UTR-H-canaliculatus_F_contig12953:8..152Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12953 9..152 +
1696845652.052061-UTR-H-canaliculatus_F_contig12953:8..1521696845652.052061-UTR-H-canaliculatus_F_contig12953:8..152Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12953 9..152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929026.0158596-CDS-H-canaliculatus_F_contig12953:152..7671622929026.0158596-CDS-H-canaliculatus_F_contig12953:152..767Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12953 153..767 +
1696845652.062088-CDS-H-canaliculatus_F_contig12953:152..7671696845652.062088-CDS-H-canaliculatus_F_contig12953:152..767Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12953 153..767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12953.2455.1prot_H-canaliculatus_F_contig12953.2455.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12953 153..767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12953.2455.1

>prot_H-canaliculatus_F_contig12953.2455.1 ID=prot_H-canaliculatus_F_contig12953.2455.1|Name=mRNA_H-canaliculatus_F_contig12953.2455.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=205bp
MVRFAQSTVPARAVLPTRLQEDRWMSGGSSPAEVSRLVSGKTTLMMEAGS
RRWIKQRGSRASAMLTAPVVLFVAKYQNRRNKHIGRGSTRWLQRHAISQL
TDVGGNYKRRDCVRRIASKHILAQSGGPAGRRPLPPQVARLPTCIAVGIV
RSRGCSCGRNTRLLPQLSSRSLTSCRKWTRYSRRRDCCGQLSVASSDIIS
FSLFT
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mRNA from alignment at H-canaliculatus_F_contig12953:9..767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12953.2455.1 ID=mRNA_H-canaliculatus_F_contig12953.2455.1|Name=mRNA_H-canaliculatus_F_contig12953.2455.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=759bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12953:9..767+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGCATGGGCGGTTGTAGCGGTGGCGGAGGAGGCTTGGCGGCTCTGGCG
AGGGCGTTGAAATCATCCTTCGGCGAAGTGAGCGGTGTTTCGGTCACCGT
TCTCGCACAAGGCCGTGCACCGAGTCATCGGAGGCCTTGTGGCGATGGTA
CGTTTCGCACAGTCCACTGTTCCAGCGCGCGCTGTGCTGCCGACGAGGCT
CCAAGAAGATCGTTGGATGTCTGGTGGGAGTTCTCCTGCAGAGGTCTCTA
GACTTGTCTCCGGGAAAACGACGCTCATGATGGAAGCAGGATCTCGGCGG
TGGATCAAGCAGCGGGGGAGCCGCGCATCGGCAATGTTGACGGCACCGGT
CGTTCTGTTTGTCGCAAAATATCAGAATCGAAGGAACAAACACATAGGCC
GAGGGAGTACTCGTTGGCTGCAGCGCCACGCAATCAGCCAGCTCACTGAT
GTAGGGGGAAACTACAAACGTAGGGATTGTGTTCGACGGATTGCTTCGAA
ACACATTTTGGCACAGTCTGGTGGGCCCGCCGGCCGCCGGCCTCTCCCGC
CACAAGTAGCTCGGCTTCCTACGTGTATCGCGGTAGGTATTGTACGAAGC
CGCGGGTGCAGTTGTGGCAGAAACACTCGGCTACTCCCTCAGCTTTCCTC
GCGGTCCTTGACAAGCTGTCGAAAATGGACGCGATACAGCAGGCGCCGAG
ACTGCTGTGGGCAGCTCTCTGTTGCTTCGTCGGACATCATCTCCTTTTCA
CTTTTCACA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12953:9..767+

>mRNA_H-canaliculatus_F_contig12953.2455.1 ID=mRNA_H-canaliculatus_F_contig12953.2455.1|Name=mRNA_H-canaliculatus_F_contig12953.2455.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1230bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12953:9..767+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTACGTTTCGCACAGTCCACTGTTCCAGCGCGCGCTGTGCTGCCGAC
GAGGCTCCAAGAAGATCGTTGGATGTCTGGTGGGAGTTCTCCTGCAGAGG
TCTCTAGACTTGTCTCCGGGAAAACGACGCTCATGATGGAAGCAGGATCT
CGGCGGTGGATCAAGCAGCGGGGGAGCCGCGCATCGGCAATGTTGACGGC
ACCGGTCGTTCTGTTTGTCGCAAAATATCAGAATCGAAGGAACAAACACA
TAGGCCGAGGGAGTACTCGTTGGCTGCAGCGCCACGCAATCAGCCAGCTC
ACTGATGTAGGGGGAAACTACAAACGTAGGGATTGTGTTCGACGGATTGC
TTCGAAACACATTTTGGCACAGTCTGGTGGGCCCGCCGGCCGCCGGCCTC
TCCCGCCACAAGTAGCTCGGCTTCCTACGTGTATCGCGGTAGGTATTGTA
CGAAGCCGCGGGTGCAGTTGTGGCAGAAACACTCGGCTACTCCCTCAGCT
TTCCTCGCGGTCCTTGACAAGCTGTCGAAAATGGACGCGATACAGCAGGC
GCCGAGACTGCTGTGGGCAGCTCTCTGTTGCTTCGTCGGACATCATCTCC
TTTTCACTTTTCACAATGGTACGTTTCGCACAGTCCACTGTTCCAGCGCG
CGCTGTGCTGCCGACGAGGCTCCAAGAAGATCGTTGGATGTCTGGTGGGA
GTTCTCCTGCAGAGGTCTCTAGACTTGTCTCCGGGAAAACGACGCTCATG
ATGGAAGCAGGATCTCGGCGGTGGATCAAGCAGCGGGGGAGCCGCGCATC
GGCAATGTTGACGGCACCGGTCGTTCTGTTTGTCGCAAAATATCAGAATC
GAAGGAACAAACACATAGGCCGAGGGAGTACTCGTTGGCTGCAGCGCCAC
GCAATCAGCCAGCTCACTGATGTAGGGGGAAACTACAAACGTAGGGATTG
TGTTCGACGGATTGCTTCGAAACACATTTTGGCACAGTCTGGTGGGCCCG
CCGGCCGCCGGCCTCTCCCGCCACAAGTAGCTCGGCTTCCTACGTGTATC
GCGGTAGGTATTGTACGAAGCCGCGGGTGCAGTTGTGGCAGAAACACTCG
GCTACTCCCTCAGCTTTCCTCGCGGTCCTTGACAAGCTGTCGAAAATGGA
CGCGATACAGCAGGCGCCGAGACTGCTGTGGGCAGCTCTCTGTTGCTTCG
TCGGACATCATCTCCTTTTCACTTTTCACA
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