mRNA_H-canaliculatus_F_contig12952.2454.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12952.2454.1
Unique NamemRNA_H-canaliculatus_F_contig12952.2454.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12952.2454.1 vs. uniprot
Match: D8LIC5_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC5_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 1.200e-80
Identity = 123/130 (94.62%), Postives = 127/130 (97.69%), Query Frame = 1 
Query:    1 TVMYPLVESVAYLHEMGIVHRDLKPENILCGDRIEDIKIADFGLSKMVMPDEIMKMPCGTLTYVAPEVLTLNGYGKEADIWSVGTIMYLLLRGRLPFDGETREEIIENTIHGTISWQNDHVWASFSDYGE 390
            TVMYPLVESVAYLHEMGIVHRDLKPENILCGDRIEDIKIADFGLSKMVMPDEIMKMPCGTLTYVAPEVLTLNGYGKEADIWSVGTIMYLLLRGRLPFDGETREEIIENTIHG I+WQND VWA+FS+ G+
Sbjct:  595 TVMYPLVESVAYLHEMGIVHRDLKPENILCGDRIEDIKIADFGLSKMVMPDEIMKMPCGTLTYVAPEVLTLNGYGKEADIWSVGTIMYLLLRGRLPFDGETREEIIENTIHGAIAWQNDPVWANFSEDGK 724
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BLAST of mRNA_H-canaliculatus_F_contig12952.2454.1 vs. uniprot
Match: A0A6H5L0T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T4_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 1.780e-78
Identity = 123/130 (94.62%), Postives = 127/130 (97.69%), Query Frame = 1 
Query:    1 TVMYPLVESVAYLHEMGIVHRDLKPENILCGDRIEDIKIADFGLSKMVMPDEIMKMPCGTLTYVAPEVLTLNGYGKEADIWSVGTIMYLLLRGRLPFDGETREEIIENTIHGTISWQNDHVWASFSDYGE 390
            TVMYPLVESVAYLHEMGIVHRDLKPENILCGDRIEDIKIADFGLSKMVMPDEIMKMPCGTLTYVAPEVLTLNGYGKEADIWSVGTIMYLLLRGRLPFDGETREEIIENTIHG I+WQND VWA+FS+ G+
Sbjct: 1069 TVMYPLVESVAYLHEMGIVHRDLKPENILCGDRIEDIKIADFGLSKMVMPDEIMKMPCGTLTYVAPEVLTLNGYGKEADIWSVGTIMYLLLRGRLPFDGETREEIIENTIHGAIAWQNDPVWANFSEDGK 1198
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BLAST of mRNA_H-canaliculatus_F_contig12952.2454.1 vs. uniprot
Match: A0A836CC15_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC15_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.120e-63
Identity = 102/127 (80.31%), Postives = 116/127 (91.34%), Query Frame = 1 
Query:    4 VMYPLVESVAYLHEMGIVHRDLKPENILCGDRIEDIKIADFGLSKMVMPDEIMKMPCGTLTYVAPEVLTLNGYGKEADIWSVGTIMYLLLRGRLPFD--GETREEIIENTIHGTISWQNDHVWASFS 378
            V+YPL+ESVAYLHEMGIVHRDLKPENILCG ++ DIKIADFGLSK+V+PDEIMKMPCGTL+YVAPEVLTLNGYG+EAD+WSVGTIMYLLLRGRLPFD  GE+RE+IIE TI+GTI   +D VW + S
Sbjct:  440 VIYPLIESVAYLHEMGIVHRDLKPENILCGQKVGDIKIADFGLSKLVLPDEIMKMPCGTLSYVAPEVLTLNGYGREADMWSVGTIMYLLLRGRLPFDIDGESREKIIERTINGTID-TDDAVWKALS 565
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BLAST of mRNA_H-canaliculatus_F_contig12952.2454.1 vs. uniprot
Match: A0A836C883_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C883_9STRA)

HSP 1 Score: 210 bits (535), Expect = 3.380e-63
Identity = 100/128 (78.12%), Postives = 115/128 (89.84%), Query Frame = 1 
Query:    4 VMYPLVESVAYLHEMGIVHRDLKPENILCGDRIEDIKIADFGLSKMVMPDEIMKMPCGTLTYVAPEVLTLNGYGKEADIWSVGTIMYLLLRGRLPFD--GETREEIIENTIHGTISWQNDHVWASFSD 381
            V+YPL+ESVAYLHEMGIVHRDLKPENILCG ++ DIKIADFGLSK+V+PDEIMKMPCGTL+YVAPEVLTLNGYG+EAD+WSVGTIMYLLLRGRLPFD  G++R +IIE TIHGTI  + D  W + S+
Sbjct:  372 VIYPLIESVAYLHEMGIVHRDLKPENILCGQKMGDIKIADFGLSKLVLPDEIMKMPCGTLSYVAPEVLTLNGYGREADMWSVGTIMYLLLRGRLPFDADGDSRGKIIERTIHGTIDTE-DATWQALSE 498
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BLAST of mRNA_H-canaliculatus_F_contig12952.2454.1 vs. uniprot
Match: A0A418DZX4_9STRA (Protein kinase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DZX4_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.930e-60
Identity = 85/124 (68.55%), Postives = 102/124 (82.26%), Query Frame = 1 
Query:    7 MYPLVESVAYLHEMGIVHRDLKPENILCGDRIEDIKIADFGLSKMVMPDEIMKMPCGTLTYVAPEVLTLNGYGKEADIWSVGTIMYLLLRGRLPFDGETREEIIENTIHGTISWQNDHVWASFS 378
            M PL ESVAYLH+MGIVHRD+KPENILCGD++ D++IADFGLSK+V P EIMKMPCGTL YVAPEVL+L GYGKEAD+WS+G IMYLLLRG LPF G+T+ +II+ T+H  +   +D  W   S
Sbjct:    1 MKPLFESVAYLHKMGIVHRDIKPENILCGDKLTDLRIADFGLSKLVYPHEIMKMPCGTLNYVAPEVLSLVGYGKEADVWSLGVIMYLLLRGELPFHGKTKNDIIQKTLHADVCVDHDDSWTGIS 124
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BLAST of mRNA_H-canaliculatus_F_contig12952.2454.1 vs. uniprot
Match: A0A397DBJ5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DBJ5_9STRA)

HSP 1 Score: 194 bits (492), Expect = 7.270e-60
Identity = 87/126 (69.05%), Postives = 103/126 (81.75%), Query Frame = 1 
Query:    1 TVMYPLVESVAYLHEMGIVHRDLKPENILCGDRIEDIKIADFGLSKMVMPDEIMKMPCGTLTYVAPEVLTLNGYGKEADIWSVGTIMYLLLRGRLPFDGETREEIIENTIHGTISWQNDHVWASFS 378
            TVM PL ESVAYLH+MGIVHRD+KPENILCGD++ D++IADFGLSK+V P EIMKMPCGTL YVAPEVL+L GYGKEAD+WS+G IMYLLLRG LPF G+T+ +II+ T+H  +    D  W   S
Sbjct:  119 TVMKPLFESVAYLHKMGIVHRDIKPENILCGDKLTDLRIADFGLSKLVYPHEIMKMPCGTLNYVAPEVLSLVGYGKEADVWSLGVIMYLLLRGELPFHGKTKNDIIQKTLHADVCVDQDDSWTGIS 244
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BLAST of mRNA_H-canaliculatus_F_contig12952.2454.1 vs. uniprot
Match: A0A397F5L6_9STRA (Protein kinase domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F5L6_9STRA)

HSP 1 Score: 194 bits (492), Expect = 6.720e-59
Identity = 87/126 (69.05%), Postives = 103/126 (81.75%), Query Frame = 1 
Query:    1 TVMYPLVESVAYLHEMGIVHRDLKPENILCGDRIEDIKIADFGLSKMVMPDEIMKMPCGTLTYVAPEVLTLNGYGKEADIWSVGTIMYLLLRGRLPFDGETREEIIENTIHGTISWQNDHVWASFS 378
            TVM PL ESVAYLH+MGIVHRD+KPENILCGD++ D++IADFGLSK+V P EIMKMPCGTL YVAPEVL+L GYGKEAD+WS+G IMYLLLRG LPF G+T+ +II+ T+H  +    D  W   S
Sbjct:  210 TVMKPLFESVAYLHKMGIVHRDIKPENILCGDKLTDLRIADFGLSKLVYPHEIMKMPCGTLNYVAPEVLSLVGYGKEADVWSLGVIMYLLLRGELPFHGKTKNDIIQKTLHADVCVDQDDSWTGIS 335
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BLAST of mRNA_H-canaliculatus_F_contig12952.2454.1 vs. uniprot
Match: M4BEL0_HYAAE (Protein kinase domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BEL0_HYAAE)

HSP 1 Score: 191 bits (485), Expect = 4.410e-58
Identity = 83/129 (64.34%), Postives = 105/129 (81.40%), Query Frame = 1 
Query:    4 VMYPLVESVAYLHEMGIVHRDLKPENILCGDRIEDIKIADFGLSKMVMPDEIMKMPCGTLTYVAPEVLTLNGYGKEADIWSVGTIMYLLLRGRLPFDGETREEIIENTIHGTISWQNDHVWASFSDYGE 390
            +MY L+ESV YLH++GIVHRDLKPENILCGD + +IKIADFGLSK+V PDE+MK+PCGTL YVAPEVL L GYG+EAD+WS+G IMYLLLRG LPF+G+T+ ++I+ T+H  +  + D  W   S  G+
Sbjct:  163 IMYSLLESVHYLHQLGIVHRDLKPENILCGDSLTEIKIADFGLSKLVCPDEVMKVPCGTLNYVAPEVLALVGYGREADLWSLGVIMYLLLRGELPFNGKTKGDVIKKTLHAVVDLETDPAWRRISSAGK 291
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BLAST of mRNA_H-canaliculatus_F_contig12952.2454.1 vs. uniprot
Match: W4G3D9_9STRA (CAMK/CAMK1 protein kinase, variant 4 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G3D9_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.430e-57
Identity = 87/126 (69.05%), Postives = 103/126 (81.75%), Query Frame = 1 
Query:    1 TVMYPLVESVAYLHEMGIVHRDLKPENILCGDRIEDIKIADFGLSKMVMPDEIMKMPCGTLTYVAPEVLTLNGYGKEADIWSVGTIMYLLLRGRLPFDGETREEIIENTIHGTISWQNDHVWASFS 378
            TVM PL ESVAYLH+MGIVHRD+KPENILCGD++ D++IADFGLSK+V P EIMKMPCGTL YVAPEVL+L GYGKEAD+WS+G IMYLLLRG LPF G+T+ +II+ T+H  +    D  W   S
Sbjct:  328 TVMKPLFESVAYLHKMGIVHRDIKPENILCGDKLTDLRIADFGLSKLVYPHEIMKMPCGTLNYVAPEVLSLVGYGKEADVWSLGVIMYLLLRGELPFHGKTKNDIIQKTLHADVCVDQDDSWTGIS 453
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BLAST of mRNA_H-canaliculatus_F_contig12952.2454.1 vs. uniprot
Match: A0A024TDM7_9STRA (CAMK/CAMK1 protein kinase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TDM7_9STRA)

HSP 1 Score: 194 bits (492), Expect = 7.300e-56
Identity = 87/126 (69.05%), Postives = 103/126 (81.75%), Query Frame = 1 
Query:    1 TVMYPLVESVAYLHEMGIVHRDLKPENILCGDRIEDIKIADFGLSKMVMPDEIMKMPCGTLTYVAPEVLTLNGYGKEADIWSVGTIMYLLLRGRLPFDGETREEIIENTIHGTISWQNDHVWASFS 378
            TVM PL ESVAYLH+MGIVHRD+KPENILCGD++ D++IADFGLSK+V P EIMKMPCGTL YVAPEVL+L GYGKEAD+WS+G IMYLLLRG LPF G+T+ +II+ T+H  +    D  W   S
Sbjct:  535 TVMKPLFESVAYLHKMGIVHRDIKPENILCGDKLTDLRIADFGLSKLVYPHEIMKMPCGTLNYVAPEVLSLVGYGKEADVWSLGVIMYLLLRGELPFHGKTKNDIIQKTLHADVCVDQDDSWTGIS 660
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12952.2454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIC5_ECTSI1.200e-8094.62N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5L0T4_9PHAE1.780e-7894.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CC15_9STRA1.120e-6380.31Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836C883_9STRA3.380e-6378.13Kinase-like domain-containing protein (Fragment) n... [more]
A0A418DZX4_9STRA2.930e-6068.55Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A397DBJ5_9STRA7.270e-6069.05Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397F5L6_9STRA6.720e-5969.05Protein kinase domain-containing protein (Fragment... [more]
M4BEL0_HYAAE4.410e-5864.34Protein kinase domain-containing protein n=1 Tax=H... [more]
W4G3D9_9STRA2.430e-5769.05CAMK/CAMK1 protein kinase, variant 4 n=1 Tax=Aphan... [more]
A0A024TDM7_9STRA7.300e-5669.05CAMK/CAMK1 protein kinase n=2 Tax=Aphanomyces inva... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12952contigH-canaliculatus_F_contig12952:2740..3351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.8
Seed ortholog evalue1.3e-66
Seed eggNOG ortholog2880.D8LIC5
KEGG koko:K08794,ko:K08808
KEGG Pathwayko04921,ko04925,map04921,map04925
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.1,2.7.11.17
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size390
Cds size384
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12952.2454.1prot_H-canaliculatus_F_contig12952.2454.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12952 2740..3345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929025.9207785-CDS-H-canaliculatus_F_contig12952:2739..28201622929025.9207785-CDS-H-canaliculatus_F_contig12952:2739..2820Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12952 2740..2820 -
1696845652.0128517-CDS-H-canaliculatus_F_contig12952:2739..28201696845652.0128517-CDS-H-canaliculatus_F_contig12952:2739..2820Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12952 2740..2820 -
1622929025.9333868-CDS-H-canaliculatus_F_contig12952:3042..33451622929025.9333868-CDS-H-canaliculatus_F_contig12952:3042..3345Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12952 3043..3345 -
1696845652.024671-CDS-H-canaliculatus_F_contig12952:3042..33451696845652.024671-CDS-H-canaliculatus_F_contig12952:3042..3345Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12952 3043..3345 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929025.9485402-UTR-H-canaliculatus_F_contig12952:3345..33511622929025.9485402-UTR-H-canaliculatus_F_contig12952:3345..3351Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12952 3346..3351 -
1696845652.0403266-UTR-H-canaliculatus_F_contig12952:3345..33511696845652.0403266-UTR-H-canaliculatus_F_contig12952:3345..3351Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12952 3346..3351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12952.2454.1

>prot_H-canaliculatus_F_contig12952.2454.1 ID=prot_H-canaliculatus_F_contig12952.2454.1|Name=mRNA_H-canaliculatus_F_contig12952.2454.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=128bp
MYPLVESVAYLHEMGIVHRDLKPENILCGDRIEDIKIADFGLSKMVMPDE
IMKMPCGTLTYVAPEVLTLNGYGKEADIWSVGTIMYLLLRGRLPFDGETR
EEIIENTIHGTISWQNDHVWASFSDYGE
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mRNA from alignment at H-canaliculatus_F_contig12952:2740..3351-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12952.2454.1 ID=mRNA_H-canaliculatus_F_contig12952.2454.1|Name=mRNA_H-canaliculatus_F_contig12952.2454.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=612bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12952:2740..3351- (Hapterophycus canaliculatus Oshoro5f female)
ACGGTGATGTACCCGCTGGTGGAGAGCGTCGCGTATCTCCACGAGATGGG
CATCGTCCACCGCGACCTCAAGCCGGAGAACATCCTCTGCGGAGACCGCA
TCGAGGACATCAAGATCGCCGACTTCGGGCTGAGCAAGATGGTGATGCCC
GACGAGATCATGAAGATGCCGTGCGGCACCCTGACCTACGTGGCCCCCGA
GGTGCTGACCCTCAACGGCTACGGGAAGGAGGCGGACATCTGGTCGGTGG
GGACCATCATGTACCTCCTGCTCCGGGGGCGCTTGCCGTTCGATGGGGAG
ACTCGAGAGGTGGGCGTGGTGCATCGCTGTCTTAGCCGTCGTCGGTGTTG
GTGTTGGTGTCAGCGCTGGTGTGTTTTCGTTCTCTCCGCGCTTGAGTTCG
AGGTCGGCTCGTCTGCGGCCGTCGGTGCCCGCAAGCCACAGATCTCTCGA
CGCGTGTCTCTTAACCCTCTTTGTCCTACTCGTGCGGTCGCGGGTCGCGG
GTGGGCTCCTCTCTCGAACCTACCCCTGCAGGAAATCATCGAGAACACAA
TCCACGGTACCATCTCGTGGCAGAACGACCACGTGTGGGCGAGCTTCTCT
GATTACGGTGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12952:2740..3351-

>mRNA_H-canaliculatus_F_contig12952.2454.1 ID=mRNA_H-canaliculatus_F_contig12952.2454.1|Name=mRNA_H-canaliculatus_F_contig12952.2454.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=768bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12952:2740..3351- (Hapterophycus canaliculatus Oshoro5f female)
ATGTACCCGCTGGTGGAGAGCGTCGCGTATCTCCACGAGATGGGCATCGT
CCACCGCGACCTCAAGCCGGAGAACATCCTCTGCGGAGACCGCATCGAGG
ACATCAAGATCGCCGACTTCGGGCTGAGCAAGATGGTGATGCCCGACGAG
ATCATGAAGATGCCGTGCGGCACCCTGACCTACGTGGCCCCCGAGGTGCT
GACCCTCAACGGCTACGGGAAGGAGGCGGACATCTGGTCGGTGGGGACCA
TCATGTACCTCCTGCTCCGGGGGCGCTTGCCGTTCGATGGGGAGACTCGA
GAGATGTACCCGCTGGTGGAGAGCGTCGCGTATCTCCACGAGATGGGCAT
CGTCCACCGCGACCTCAAGCCGGAGAACATCCTCTGCGGAGACCGCATCG
AGGACATCAAGATCGCCGACTTCGGGCTGAGCAAGATGGTGATGCCCGAC
GAGATCATGAAGATGCCGTGCGGCACCCTGACCTACGTGGCCCCCGAGGT
GCTGACCCTCAACGGCTACGGGAAGGAGGCGGACATCTGGTCGGTGGGGA
CCATCATGTACCTCCTGCTCCGGGGGCGCTTGCCGTTCGATGGGGAGACT
CGAGAGGAAATCATCGAGAACACAATCCACGGTACCATCTCGTGGCAGAA
CGACCACGTGTGGGCGAGCTTCTCTGATTACGGTGAGGAAATCATCGAGA
ACACAATCCACGGTACCATCTCGTGGCAGAACGACCACGTGTGGGCGAGC
TTCTCTGATTACGGTGAG
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