mRNA_H-canaliculatus_F_contig12939.2446.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12939.2446.1
Unique NamemRNA_H-canaliculatus_F_contig12939.2446.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12939.2446.1 vs. uniprot
Match: A0A6H5L4Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y0_9PHAE)

HSP 1 Score: 341 bits (875), Expect = 3.040e-106
Identity = 192/285 (67.37%), Postives = 209/285 (73.33%), Query Frame = 2 
Query:  311 GAGRALRWAADALLVALVVKGSVPVVRNLAG--GGQKMNSSFDSLRIVNTYGNFGSVTKTRGEVVLKGTRHPEPLDPAAEWSEYGFRCKPGDVDRRPCVISPLHYRLDWQMWFAAFQTYGQNPWLVSLVSKLLSTEDSTRALAGSLLRHDPFSRADDDGTGAGGT---GGPPLFIKADLYIYEFTPPRRWFA--------DGQDNSNSKSDNNDGHGRGSAMSSTSSPYVADTNGXXXXXXXYAAPREDGEEVGAWWTRRLVREYLPPVGLGNPSLAKFLASHGL 1126
            GA RALRWAAD L+V LVVKGSVPVV+N+AG  GGQ+MNSSFDSLRIVN+YGNFGSVTKTRGEVVLKGTRHP PLDP AEW EY  +CKPGDVDRRPCVISPLHYRLDWQ+WFAAFQTY  NPWLV+LVSKLLS ED TRAL GSLL +DPFS    DG+G  G    G  PLFIKADLY+YEFTPPR WFA        + Q+ S S  D  DG  + + +  T           XXXXXX       G E G WWTRR VREYLPPVGL NPSL +FL  HGL
Sbjct:  534 GARRALRWAADGLVVVLVVKGSVPVVKNMAGVGGGQRMNSSFDSLRIVNSYGNFGSVTKTRGEVVLKGTRHPNPLDPMAEWKEYS-KCKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLSREDKTRALVGSLLDYDPFS----DGSGIDGEEDGGRRPLFIKADLYLYEFTPPRGWFAGTPASTTPEAQERSGSHEDG-DGDQQTTRVRETXXXXXX-----XXXXXXXXXXXXXGRERGVWWTRRFVREYLPPVGLDNPSLRQFLLQHGL 807
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BLAST of mRNA_H-canaliculatus_F_contig12939.2446.1 vs. uniprot
Match: D7G290_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G290_ECTSI)

HSP 1 Score: 331 bits (848), Expect = 1.220e-102
Identity = 183/282 (64.89%), Postives = 201/282 (71.28%), Query Frame = 2 
Query:  332 WAADALLVALVVKGSVPVVRNLAG--GGQKMNSSFDSLRIVNTYGNFGSVTKTRGEVVLKGTRHPEPLDPAAEWSEYGFRCKPGDVDRRPCVISPLHYRLDWQMWFAAFQTYGQNPWLVSLVSKLLSTEDSTRALAGSLLRHDPFSRADDDGT-GAGGTGGPPLFIKADLYIYEFTPPRRWFADGQDNSNSKS-DNNDGHGRGSA-------------MSSTSSPYVADTNGXXXXXXXYAAPREDGEEVGAWWTRRLVREYLPPVGLGNPSLAKFLASHGL 1126
            WAA  L+V LV KG++PVV+N+AG  GGQKMNSSFDSLRIVN+YGNFGSVTKTRGEVVLKGTRH  PLDP AEW EYGFRCKPGDVDRRPCVISPLHYRLDWQ+WFAAFQTY  NPWLV+LVSKLLS +D TR L GSLL +DPF  ADD G  G  G GG PLFIKADLY+YEFTPPR WFA    ++  ++ +   GH  G+                            XXXXXXX       G E GAWWTRR VREYLPPVG  NPSL +FLA HGL
Sbjct:  489 WAAHGLVVVLVGKGTIPVVKNMAGVGGGQKMNSSFDSLRIVNSYGNFGSVTKTRGEVVLKGTRHSNPLDPMAEWKEYGFRCKPGDVDRRPCVISPLHYRLDWQVWFAAFQTYRHNPWLVNLVSKLLSRKDETRTLVGSLLDYDPF--ADDSGIDGEDGGGGRPLFIKADLYLYEFTPPRGWFAGTPASTTPEAQERTGGHEDGNGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRETGAWWTRRFVREYLPPVGPDNPSLRQFLAQHGL 768
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BLAST of mRNA_H-canaliculatus_F_contig12939.2446.1 vs. uniprot
Match: A0A8B9ILB6_ANSCY (Lipase maturation factor n=2 Tax=Neognathae TaxID=8825 RepID=A0A8B9ILB6_ANSCY)

HSP 1 Score: 181 bits (460), Expect = 1.050e-50
Identity = 92/184 (50.00%), Postives = 117/184 (63.59%), Query Frame = 2 
Query:  305 PAGAGRALRWAADALLVALVVKGSVPVVRNLAGGGQKMNSSFDSLRIVNTYGNFGSVTKTRGEVVLKGTRHPEPLDPAAEWSEYGFRCKPGDVDRRPCVISPLHYRLDWQMWFAAFQTYGQNPWLVSLVSKLLSTEDSTRALAGSLLRHDPFSRADDDGTGAGGTGGPPLFIKADLYIYEFTPP 856
            P G GR +R   +     L+   SVPVV NL    Q MN+SF+ LRIVNTYG FGS+TK R EV+L+GT  P+P DPAA W EY F+CKPGD+ RRPC I+P HYRLDW MWFAAFQTY QN W++ L  KLL+ E+ T     SL+  +PF+              PP +I+ + + Y+F+ P
Sbjct:   62 PLGYGRCIRQVVNISFGLLIAYLSVPVVLNLLSSRQVMNTSFNPLRIVNTYGAFGSITKERTEVILQGTSSPDPNDPAAVWEEYDFKCKPGDLKRRPCFITPYHYRLDWLMWFAAFQTYEQNEWIIHLAGKLLAQEEETL----SLMATNPFAGR-----------APPRWIRGEHFKYKFSRP 230
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BLAST of mRNA_H-canaliculatus_F_contig12939.2446.1 vs. uniprot
Match: A0A8B9UN00_9AVES (Lipase maturation factor n=1 Tax=Anas zonorhyncha TaxID=75864 RepID=A0A8B9UN00_9AVES)

HSP 1 Score: 181 bits (459), Expect = 5.900e-50
Identity = 92/184 (50.00%), Postives = 116/184 (63.04%), Query Frame = 2 
Query:  305 PAGAGRALRWAADALLVALVVKGSVPVVRNLAGGGQKMNSSFDSLRIVNTYGNFGSVTKTRGEVVLKGTRHPEPLDPAAEWSEYGFRCKPGDVDRRPCVISPLHYRLDWQMWFAAFQTYGQNPWLVSLVSKLLSTEDSTRALAGSLLRHDPFSRADDDGTGAGGTGGPPLFIKADLYIYEFTPP 856
            P G GR +R   +     L+   S+PVV NL    Q MN+SF+ LRIVNTYG FGS+TK R EV+L+GT  P+P DPAA W EY F+CKPGD+ RRPC ISP HYRLDW MWFAAFQTY QN W++ L  KLL+ E+ T     SL+  +PF               PP +I+ + + Y+F+ P
Sbjct:  112 PLGYGRCIRQVVNISFGLLIAYLSLPVVLNLLSSRQVMNTSFNPLRIVNTYGAFGSITKERTEVILQGTSSPDPNDPAAVWEEYDFKCKPGDLKRRPCFISPYHYRLDWLMWFAAFQTYEQNEWIIHLAGKLLAQEEETL----SLMATNPFEGR-----------APPRWIRGEHFKYKFSRP 280
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BLAST of mRNA_H-canaliculatus_F_contig12939.2446.1 vs. uniprot
Match: UPI0014038EC0 (lipase maturation factor 1 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014038EC0)

HSP 1 Score: 187 bits (474), Expect = 8.840e-50
Identity = 97/185 (52.43%), Postives = 116/185 (62.70%), Query Frame = 2 
Query:  302 RPAGAGRALRWAADALLVALVVKGSVPVVRNLAGGGQKMNSSFDSLRIVNTYGNFGSVTKTRGEVVLKGTRHPEPLDPAAEWSEYGFRCKPGDVDRRPCVISPLHYRLDWQMWFAAFQTYGQNPWLVSLVSKLLSTEDSTRALAGSLLRHDPFSRADDDGTGAGGTGGPPLFIKADLYIYEFTPP 856
            RP   G  +R     LL  L+   SVPVV NL    Q+MNSSFD LRIVNTYG FGS+TK R EVVL+GT   +P D   EW EY F CKPGD  RRPC++SP HYRLDW MWFAAFQTY QNPWL+ LV KLL+ ++ T +L G     +PF   D           PP +I+A  + Y+F+ P
Sbjct:  356 RPRKLGALVRSCVHVLLALLIAYLSVPVVHNLMSSTQRMNSSFDPLRIVNTYGAFGSITKERTEVVLQGTASVDPADATTEWEEYDFVCKPGDTRRRPCLVSPYHYRLDWLMWFAAFQTYEQNPWLLHLVGKLLTNDNQTLSLMGK----NPFEGRD-----------PPRWIRAQHFRYQFSEP 525
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BLAST of mRNA_H-canaliculatus_F_contig12939.2446.1 vs. uniprot
Match: UPI000D6A161C (lipase maturation factor 1-like n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI000D6A161C)

HSP 1 Score: 181 bits (458), Expect = 1.400e-49
Identity = 96/199 (48.24%), Postives = 126/199 (63.32%), Query Frame = 2 
Query:  260 VEASRAAGSLRAQVRPAGAGRALRWAADALLVALVVKGSVPVVRNLAGGGQKMNSSFDSLRIVNTYGNFGSVTKTRGEVVLKGTRHPEPLDPAAEWSEYGFRCKPGDVDRRPCVISPLHYRLDWQMWFAAFQTYGQNPWLVSLVSKLLSTEDSTRALAGSLLRHDPFSRADDDGTGAGGTGGPPLFIKADLYIYEFTPP 856
            ++A  AAG    +V P   G  +R A +  L AL++  SVPVV NL    Q MN+S++ LRIVNTYG FGS+TK R EV+++GT  P+P DPAA W EY F+CKPG++ RRPC+ISP HYRLDW MWFAAFQTY QN W++    KLL+ E+ T     SLL  +PF               PP +++ + Y Y+F+ P
Sbjct:  121 IQAEEAAG----KVGPLQYGSYVRKAVNVSLGALIIFLSVPVVLNLFSAQQIMNTSYNPLRIVNTYGAFGSITKERTEVIIQGTSSPDPNDPAAVWEEYEFKCKPGNLKRRPCLISPYHYRLDWLMWFAAFQTYEQNEWIIHFAGKLLANEEETL----SLLAFNPFEGK-----------APPKWVRGEHYRYKFSRP 300
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BLAST of mRNA_H-canaliculatus_F_contig12939.2446.1 vs. uniprot
Match: G1N192_MELGA (Lipase maturation factor n=1 Tax=Meleagris gallopavo TaxID=9103 RepID=G1N192_MELGA)

HSP 1 Score: 179 bits (454), Expect = 1.820e-49
Identity = 94/184 (51.09%), Postives = 118/184 (64.13%), Query Frame = 2 
Query:  305 PAGAGRALRWAADALLVALVVKGSVPVVRNLAGGGQKMNSSFDSLRIVNTYGNFGSVTKTRGEVVLKGTRHPEPLDPAAEWSEYGFRCKPGDVDRRPCVISPLHYRLDWQMWFAAFQTYGQNPWLVSLVSKLLSTEDSTRALAGSLLRHDPFSRADDDGTGAGGTGGPPLFIKADLYIYEFTPP 856
            PAG G  +R   +     L+   SVPVV NL    Q MN+SF+ LRIVNTYG FGS+TK R EV+L+GT  P+P DPAA W E+ F+CKPGD+ RRPC ISP HYRLDW MWFAAFQTY QN W++ L  KLL+ E+     A SL+  +PF+  D           PP +I+ + Y Y+F+ P
Sbjct:   91 PAGLGCHIRRVVNISFGLLIAYLSVPVVINLLSSRQVMNTSFNPLRIVNTYGAFGSITKERTEVILQGTSSPDPNDPAALWQEFDFKCKPGDLWRRPCFISPYHYRLDWLMWFAAFQTYEQNEWIIHLAGKLLAQEEE----ALSLIATNPFADRD-----------PPRWIRGEHYKYKFSRP 259
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BLAST of mRNA_H-canaliculatus_F_contig12939.2446.1 vs. uniprot
Match: UPI000359BF8D (lipase maturation factor 1 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359BF8D)

HSP 1 Score: 186 bits (473), Expect = 2.040e-49
Identity = 111/268 (41.42%), Postives = 137/268 (51.12%), Query Frame = 2 
Query:  320 RALRWAADALLVALVVKGSVPVVRNLAGGGQKMNSSFDSLRIVNTYGNFGSVTKTRGEVVLKGTRHPEPLDPAAEWSEYGFRCKPGDVDRRPCVISPLHYRLDWQMWFAAFQTYGQNPWLVSLVSKLLSTEDSTRALAGSLLRHDPFSRADDDGTGAGGTGGPPLFIKADLYIYEFTPPRRWFADGQDNSNSKSDNNDGHGRGSAMSSTSSPYVADTNGXXXXXXXYAAPREDGEEVGAWWTRRLVREYLPPVGLGNPSLAKFLASHG 1123
            R +R   +  L  L+   SVPVV+NL    Q MN+SFD LR+VNTYG FGSVTK R EV+ +GT   +P  P+A W EY F+CKPGDV RRPC+ISP HYRLDW MWFAAFQTY QNPWL+ L +KLL  ++       SL+ H+PF   D           PP F++A+   Y FT                         GSA + +                            GAWW R+LV  YLPPV L    L K ++  G
Sbjct:  395 RTIRSVFNISLAVLIAYLSVPVVQNLLSPRQAMNTSFDPLRLVNTYGAFGSVTKKRTEVIFQGTSSSDPSSPSAVWEEYQFKCKPGDVYRRPCLISPYHYRLDWLMWFAAFQTYQQNPWLLHLAAKLLVNDEGVE----SLIAHNPFHNRD-----------PPKFVRAEHCKYSFTKI-----------------------GSAEAKS----------------------------GAWWKRKLVGLYLPPVSLD--MLGKLISDMG 594
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BLAST of mRNA_H-canaliculatus_F_contig12939.2446.1 vs. uniprot
Match: A0A1A8L3Z3_9TELE (Lipase maturation factor n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8L3Z3_9TELE)

HSP 1 Score: 181 bits (460), Expect = 3.120e-49
Identity = 89/180 (49.44%), Postives = 115/180 (63.89%), Query Frame = 2 
Query:  317 GRALRWAADALLVALVVKGSVPVVRNLAGGGQKMNSSFDSLRIVNTYGNFGSVTKTRGEVVLKGTRHPEPLDPAAEWSEYGFRCKPGDVDRRPCVISPLHYRLDWQMWFAAFQTYGQNPWLVSLVSKLLSTEDSTRALAGSLLRHDPFSRADDDGTGAGGTGGPPLFIKADLYIYEFTPP 856
            G  +R   +  L  L+   S+PVV NL    Q MN+SFD LRIVNTYG FGS+TK R EV+ +GT  P+P DP A W EY FRCKPG+V RRPC+ISP HYRLDW MWFAAFQTY Q+ W++ +  +LLS + +      SLL H+PF   D           PP +++ + +IY+F+ P
Sbjct:  192 GLLIRRVVNVSLAVLIGYLSIPVVMNLFSSRQVMNTSFDPLRIVNTYGAFGSITKERTEVIFQGTLSPDPTDPGAVWEEYQFRCKPGEVSRRPCLISPYHYRLDWLMWFAAFQTYEQSEWVIHIAGRLLSNDSTVL----SLLDHNPFQGRD-----------PPKWVRGEHFIYKFSQP 356
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BLAST of mRNA_H-canaliculatus_F_contig12939.2446.1 vs. uniprot
Match: A0A6J3DWQ8_AYTFU (Lipase maturation factor n=3 Tax=Anatidae TaxID=8830 RepID=A0A6J3DWQ8_AYTFU)

HSP 1 Score: 182 bits (462), Expect = 4.290e-49
Identity = 93/184 (50.54%), Postives = 116/184 (63.04%), Query Frame = 2 
Query:  305 PAGAGRALRWAADALLVALVVKGSVPVVRNLAGGGQKMNSSFDSLRIVNTYGNFGSVTKTRGEVVLKGTRHPEPLDPAAEWSEYGFRCKPGDVDRRPCVISPLHYRLDWQMWFAAFQTYGQNPWLVSLVSKLLSTEDSTRALAGSLLRHDPFSRADDDGTGAGGTGGPPLFIKADLYIYEFTPP 856
            P G GR +R   +     L+   SVPVV NL    Q MN+SF+ LRIVNTYG FGS+TK R EV+L+GT  P+P DPAA W EY F+CKPGD+ RRPC ISP HYRLDW MWFAAFQTY QN W++ L  KLL+ E+ T     SL+  +PF               PP +I+ + + Y+F+ P
Sbjct:  236 PLGYGRCIRQVVNISFGLLIAYLSVPVVLNLLSSRQVMNTSFNPLRIVNTYGAFGSITKERTEVILQGTSSPDPNDPAAVWEEYDFKCKPGDLKRRPCFISPYHYRLDWLMWFAAFQTYEQNEWIIHLAGKLLAQEEETL----SLMATNPFEGR-----------APPRWIRGEHFKYKFSRP 404
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12939.2446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Y0_9PHAE3.040e-10667.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G290_ECTSI1.220e-10264.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8B9ILB6_ANSCY1.050e-5050.00Lipase maturation factor n=2 Tax=Neognathae TaxID=... [more]
A0A8B9UN00_9AVES5.900e-5050.00Lipase maturation factor n=1 Tax=Anas zonorhyncha ... [more]
UPI0014038EC08.840e-5052.43lipase maturation factor 1 n=1 Tax=Petromyzon mari... [more]
UPI000D6A161C1.400e-4948.24lipase maturation factor 1-like n=1 Tax=Python biv... [more]
G1N192_MELGA1.820e-4951.09Lipase maturation factor n=1 Tax=Meleagris gallopa... [more]
UPI000359BF8D2.040e-4941.42lipase maturation factor 1 n=1 Tax=Aplysia califor... [more]
A0A1A8L3Z3_9TELE3.120e-4949.44Lipase maturation factor n=2 Tax=Nothobranchius Ta... [more]
A0A6J3DWQ8_AYTFU4.290e-4950.54Lipase maturation factor n=3 Tax=Anatidae TaxID=88... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12939contigH-canaliculatus_F_contig12939:319..3336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score300.8
Seed ortholog evalue5.6e-79
Seed eggNOG ortholog2880.D7G290
Preferred nameLMF1
GOsGO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006807,GO:0006810,GO:0006888,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009306,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0031323,GO:0031984,GO:0032501,GO:0032940,GO:0033036,GO:0033578,GO:0034381,GO:0034382,GO:0034645,GO:0036211,GO:0042175,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046486,GO:0046903,GO:0046907,GO:0048193,GO:0050789,GO:0050790,GO:0050794,GO:0051004,GO:0051006,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051604,GO:0051641,GO:0051649,GO:0060191,GO:0060193,GO:0061365,GO:0062012,GO:0065007,GO:0065009,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0071830,GO:0080090,GO:0090181,GO:0090207,GO:0097006,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.protein glycosylation in Golgi
EggNOG OGs28KNS@1,2QT4H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size1288
Cds size717
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929024.2557433-UTR-H-canaliculatus_F_contig12939:318..7331622929024.2557433-UTR-H-canaliculatus_F_contig12939:318..733Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12939 319..733 +
1696845651.5312672-UTR-H-canaliculatus_F_contig12939:318..7331696845651.5312672-UTR-H-canaliculatus_F_contig12939:318..733Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12939 319..733 +
1622929024.3765464-UTR-H-canaliculatus_F_contig12939:3180..33361622929024.3765464-UTR-H-canaliculatus_F_contig12939:3180..3336Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12939 3181..3336 +
1696845651.6001318-UTR-H-canaliculatus_F_contig12939:3180..33361696845651.6001318-UTR-H-canaliculatus_F_contig12939:3180..3336Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12939 3181..3336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929024.2730727-CDS-H-canaliculatus_F_contig12939:733..7531622929024.2730727-CDS-H-canaliculatus_F_contig12939:733..753Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12939 734..753 +
1696845651.542438-CDS-H-canaliculatus_F_contig12939:733..7531696845651.542438-CDS-H-canaliculatus_F_contig12939:733..753Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12939 734..753 +
1622929024.2910383-CDS-H-canaliculatus_F_contig12939:1426..15481622929024.2910383-CDS-H-canaliculatus_F_contig12939:1426..1548Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12939 1427..1548 +
1696845651.5584812-CDS-H-canaliculatus_F_contig12939:1426..15481696845651.5584812-CDS-H-canaliculatus_F_contig12939:1426..1548Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12939 1427..1548 +
1622929024.308976-CDS-H-canaliculatus_F_contig12939:1833..19071622929024.308976-CDS-H-canaliculatus_F_contig12939:1833..1907Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12939 1834..1907 +
1696845651.5691373-CDS-H-canaliculatus_F_contig12939:1833..19071696845651.5691373-CDS-H-canaliculatus_F_contig12939:1833..1907Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12939 1834..1907 +
1622929024.3311636-CDS-H-canaliculatus_F_contig12939:2189..24011622929024.3311636-CDS-H-canaliculatus_F_contig12939:2189..2401Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12939 2190..2401 +
1696845651.5804915-CDS-H-canaliculatus_F_contig12939:2189..24011696845651.5804915-CDS-H-canaliculatus_F_contig12939:2189..2401Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12939 2190..2401 +
1622929024.351142-CDS-H-canaliculatus_F_contig12939:2891..31801622929024.351142-CDS-H-canaliculatus_F_contig12939:2891..3180Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12939 2892..3180 +
1696845651.5905864-CDS-H-canaliculatus_F_contig12939:2891..31801696845651.5905864-CDS-H-canaliculatus_F_contig12939:2891..3180Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12939 2892..3180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12939.2446.1prot_H-canaliculatus_F_contig12939.2446.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12939 734..3180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12939.2446.1

>prot_H-canaliculatus_F_contig12939.2446.1 ID=prot_H-canaliculatus_F_contig12939.2446.1|Name=mRNA_H-canaliculatus_F_contig12939.2446.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=239bp
MNSSFDSLRIVNTYGNFGSVTKTRGEVVLKGTRHPEPLDPAAEWSEYGFR
CKPGDVDRRPCVISPLHYRLDWQMWFAAFQTYGQNPWLVSLVSKLLSTED
STRALAGSLLRHDPFSRADDDGTGAGGTGGPPLFIKADLYIYEFTPPRRW
FADGQDNSNSKSDNNDGHGRGSAMSSTSSPYVADTNGGGGGGGGYAAPRE
DGEEVGAWWTRRLVREYLPPVGLGNPSLAKFLASHGLE*
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mRNA from alignment at H-canaliculatus_F_contig12939:319..3336+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12939.2446.1 ID=mRNA_H-canaliculatus_F_contig12939.2446.1|Name=mRNA_H-canaliculatus_F_contig12939.2446.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3018bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12939:319..3336+ (Hapterophycus canaliculatus Oshoro5f female)
CCGCCTCCGCGAGAGCCATGAGGGCGGGCAAGATACGGCAGAAAAGCCGA
AGCCGCCGCCTCCGTCGCCATCTCTGGCGCAAGCACCGGCCCCTCCGCCC
GGTGCCGGCGGCGCCGGCGGATCTGCCGCCACCGCCTTCCCTAAAGCCGC
ACCCGCCACGGCCACCCCCGTCACCACCGCTCCCGTCTCAACCGCCACCG
GTTGCAGCGCTTGTGCCGCTACGGCTTCCACGAACGGCGGGCGTGTTTCT
CGCGGGAGCGTCGAAGCCTCACGCGCGGCGGGATCGCTGCGGGCACAGGT
CAGGCCGGCCGGCGCGGGGCGGGCCCTGAGGTGGGCGGCGGACGCGCTGC
TGGTGGCGCTAGTCGTGAAGGGGAGCGTCCCCGTGGTGAGGAACTTGGCC
GGCGGGGGGCAGAAGATGAACAGCAGCTTCGACAGGTCCGTTCTGGCGAG
CGCTCTTCGCTTCGTGTGCGTGGGTGTTGCGCGTGTTGATGTACTCTGCA
CTTCATCCTCGCGTTTTCGGAACGCAAGAGACAAGCATGGGCGGGGCGGG
GGTGCTGCCGCGGGGGGGCCGACAGGCCGACGGGCGCGGAAAGGAGGGTA
CCACGTGTGTGTGCCTGCTCCTGCAAGCATTTCGGTTGATTTTTTCTGAC
GAGGGGGCAGGGCGGGGGGGGGTGACGTCAAAATTCGGACGCGTTGATGA
TGTCGGTCGTTCTTTCATTTTGTCGTCGTGCAATTGTTCTTCGTGGGGAT
ATGGCCGGGAGGGCGTAGGGAGCCAGCGTGTGCAAGAGGATTGACAAGCC
GGTGTTGCGCTGGAGAAATGCGGGGTTATTTACCTGTGCGCATCGGAAAT
AAGATTGATGGTATCAGCGCAACGCGATTGTCTTTCTTAGGAGCTCAATG
TAAGGGGGTAGGGCCTCATCCTCAAGCCCCACAATGCTTTGTTATCTCTG
CCCCTCTCTCCCCCTGCCTCCCCCTTCCTCCCTCCCTCCCTCCCTACCTT
TGCTCAACCACGTACCATCCTCCCCGCTCCTTGCTCTATATCTACCCGCG
ATCTCGCCTTATCCCTCGCACGGCATGAATGATGTACCCCCGACCTCGTG
CTGGGCAGCCTGCGCATCGTGAACACCTACGGCAATTTCGGTAGTGTGAC
CAAGACCAGAGGAGAGGTCGTCCTCAAGGGCACCAGGCACCCGGAACCTC
TAGACCCGGCTGCCGAGTGGTCAGAGTACGGTAAGAGCCGAATTTTAGTG
GTCAGCTGGTCGCGGGCCCAGCTCTGATGAGGCGAGCTCTCGCATTGGAC
ACGGGGCGACCGGTCTCGTGCGGTCTGGCGCCGGGAGCTCCCACCGAATA
AAAGGGGTCACCTCTCCGCCCCCCACTCCCTCTCCTCCACCCAACTACAC
GGCTCGGCCATTTCTTATCGCGCTCGCTGTGATGAACGTTTAGACCTCAC
GTCGTTGCTGCCGCACTGCCGGACTCACGCGCTCCCTGCGCTTCCTGTAA
ACGTCGCATGTCCAGGCTTCAGGTGTAAGCCCGGGGACGTGGACCGACGG
CCGTGCGTCATCAGCCCTCTCCATTACCGTCTCGACTGGGTGAGAGATAT
CCGCAGGCGGGGTGACCGGCAATGGTTTCCCCACGATTCACCTCTTTCGC
GCTTGTTGCGGAGCCCCCCATGCCTGCCCCCCTCCACCCCGCCACAACAC
GAGCACTGGGGCCCCGTGAGCTGGTTCCTTCTTCCCCCCGGCCCCCCGGT
CCCCCGTTCCCCCCCCCGGTCTCTCTGCCGACGCATTGCTGACTGTCCGG
TTCCCTTGCTCGTCGGTTTCGCCCGTCTCGTCTTCAACAACACATCTCGG
CGCGGGAAACGCAATCGACAGCAAATGTGGTTCGCGGCGTTCCAAACCTA
CGGGCAGAACCCGTGGCTGGTGAGTCTGGTGTCGAAGCTCCTGAGCACGG
AGGACAGCACCAGGGCTCTGGCGGGGTCGCTGCTGCGCCACGACCCTTTT
TCTCGGGCCGATGACGACGGGACGGGGGCCGGGGGCACCGGCGGGCCGCC
ACTATTCATCAAGGCGGACCTATATATTTACGAGTGAGTTGAGGGTGGTG
GCTTGCGCGGAGGTGGCAACGACGTGCGTTGGCGCTTTGGATTGGGGTTT
GGGGGGGGGGGGGGGGGGGCGGGGGGGGGTGGGGGGGGGGGGGGGGGGGG
GGGGGGAGGGGGGGGGGTGGCTGGAGGGGGGGGGGGGGGGGTAAGGGAAG
AGTGGAGTTGACTGAAGGGAGTGGGCTCGACCGAGATCTGCGCTGGGGTG
TCCGGGCCGCCCCTGTCCGGCCACGCATCATCTAGGACCAGTCTTTGGCC
GTGGTGGTGATCGCCGTCGCGTCCGTTCCCGTTCCGGTAGTCCTGATGAT
TCGTGGGGCAGGTCAATGAAGCTTGCAACAACAGCCGTAGCAGAACGTGG
GTCCGCCTGGCCTTATGATCTGAGGGTTAGGCTGACGATCTGATTCGGGG
ATCGCTCGCCCGCCCCCGACTCCAACTGCAACCCGGACACCCACCCCGTT
TCCCCTGAAAATCGACGATCCAGGTTCACCCCTCCCCGGCGATGGTTTGC
GGACGGCCAGGACAACAGCAACAGCAAAAGCGACAACAATGATGGCCATG
GGAGAGGCTCGGCGATGAGCTCAACATCGTCTCCGTACGTTGCCGACACC
AACGGAGGCGGCGGCGGTGGCGGGGGCTACGCAGCACCGCGAGAAGATGG
AGAAGAGGTGGGCGCGTGGTGGACACGCAGGCTCGTGAGGGAATATCTCC
CGCCTGTGGGTCTCGGAAATCCCTCCCTGGCAAAGTTCTTAGCTTCACAC
GGTCTGGAGTGATAGTGGTGTACACAGTACCGGCGGCGCCTGTTGTTGTG
GTTTTTGTTGTTGTTATCGTTGCTTTATTCACGCGTTTTGTAAGACAAAA
TCTGCGTTCACATATTTTACGGTACGGCTGTTGAGGCGCCCACTCTTGGG
GGGTAGGGGGGGGGGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12939:319..3336+

>mRNA_H-canaliculatus_F_contig12939.2446.1 ID=mRNA_H-canaliculatus_F_contig12939.2446.1|Name=mRNA_H-canaliculatus_F_contig12939.2446.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1434bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12939:319..3336+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACAGCAGCTTCGACAGATGAACAGCAGCTTCGACAGCCTGCGCATC
GTGAACACCTACGGCAATTTCGGTAGTGTGACCAAGACCAGAGGAGAGGT
CGTCCTCAAGGGCACCAGGCACCCGGAACCTCTAGACCCGGCTGCCGAGT
GGTCAGAGTACGCCTGCGCATCGTGAACACCTACGGCAATTTCGGTAGTG
TGACCAAGACCAGAGGAGAGGTCGTCCTCAAGGGCACCAGGCACCCGGAA
CCTCTAGACCCGGCTGCCGAGTGGTCAGAGTACGGCTTCAGGTGTAAGCC
CGGGGACGTGGACCGACGGCCGTGCGTCATCAGCCCTCTCCATTACCGTC
TCGACTGGGCTTCAGGTGTAAGCCCGGGGACGTGGACCGACGGCCGTGCG
TCATCAGCCCTCTCCATTACCGTCTCGACTGGCAAATGTGGTTCGCGGCG
TTCCAAACCTACGGGCAGAACCCGTGGCTGGTGAGTCTGGTGTCGAAGCT
CCTGAGCACGGAGGACAGCACCAGGGCTCTGGCGGGGTCGCTGCTGCGCC
ACGACCCTTTTTCTCGGGCCGATGACGACGGGACGGGGGCCGGGGGCACC
GGCGGGCCGCCACTATTCATCAAGGCGGACCTATATATTTACGACAAATG
TGGTTCGCGGCGTTCCAAACCTACGGGCAGAACCCGTGGCTGGTGAGTCT
GGTGTCGAAGCTCCTGAGCACGGAGGACAGCACCAGGGCTCTGGCGGGGT
CGCTGCTGCGCCACGACCCTTTTTCTCGGGCCGATGACGACGGGACGGGG
GCCGGGGGCACCGGCGGGCCGCCACTATTCATCAAGGCGGACCTATATAT
TTACGAGTTCACCCCTCCCCGGCGATGGTTTGCGGACGGCCAGGACAACA
GCAACAGCAAAAGCGACAACAATGATGGCCATGGGAGAGGCTCGGCGATG
AGCTCAACATCGTCTCCGTACGTTGCCGACACCAACGGAGGCGGCGGCGG
TGGCGGGGGCTACGCAGCACCGCGAGAAGATGGAGAAGAGGTGGGCGCGT
GGTGGACACGCAGGCTCGTGAGGGAATATCTCCCGCCTGTGGGTCTCGGA
AATCCCTCCCTGGCAAAGTTCTTAGCTTCACACGGTCTGGAGTGAGTTCA
CCCCTCCCCGGCGATGGTTTGCGGACGGCCAGGACAACAGCAACAGCAAA
AGCGACAACAATGATGGCCATGGGAGAGGCTCGGCGATGAGCTCAACATC
GTCTCCGTACGTTGCCGACACCAACGGAGGCGGCGGCGGTGGCGGGGGCT
ACGCAGCACCGCGAGAAGATGGAGAAGAGGTGGGCGCGTGGTGGACACGC
AGGCTCGTGAGGGAATATCTCCCGCCTGTGGGTCTCGGAAATCCCTCCCT
GGCAAAGTTCTTAGCTTCACACGGTCTGGAGTGA
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