mRNA_H-canaliculatus_F_contig12931.2442.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12931.2442.1
Unique NamemRNA_H-canaliculatus_F_contig12931.2442.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12931.2442.1 vs. uniprot
Match: D7FQ14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ14_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 3.320e-27
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:    1 QEFISQDAESSNSGQQRHASSLEEGQREVRSILGALVLSQLRSVWHTQTAQVQGEQYLFCLVVDAVRTMLAAHSAARH 234
            +EF +   E  +SG QRHAS+L++GQREVRSILG LVLSQLRSVWHTQTAQVQ EQYLFCLVVDAVRTMLAAH AA H
Sbjct:   17 EEFSASSQELDSSGSQRHASTLDQGQREVRSILGGLVLSQLRSVWHTQTAQVQAEQYLFCLVVDAVRTMLAAHGAAPH 94
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12931.2442.1 vs. uniprot
Match: A0A6H5KD93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD93_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 3.720e-26
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:    1 QEFISQDAESSNSGQQRHASSLEEGQREVRSILGALVLSQLRSVWHTQTAQVQGEQYLFCLVVDAVRTMLAAHSAARH 234
            +EF +   E  +SG QRHAS+L++GQREVRSILG LVLSQLRSVWHTQTAQVQ EQYLFCLVVDAVRTMLAAH AA H
Sbjct:  252 EEFSASSQELDSSGSQRHASTLDQGQREVRSILGGLVLSQLRSVWHTQTAQVQAEQYLFCLVVDAVRTMLAAHGAAPH 329
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12931.2442.1 vs. uniprot
Match: W7TQZ3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQZ3_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.830e-12
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 QEFISQDAESSNSGQQRHASSLEEGQREVRSILGALVLSQLRSVWHTQTAQVQGEQYLFCLVVDAVRTMLAA 216
            Q+F SQ+  +S    QRHA++LE GQREVR+I+G+++LSQLR+ WH QTA  Q E YLF L + A+RT LA+
Sbjct:  191 QDFDSQEFAASG---QRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQLAS 259
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12931.2442.1 vs. uniprot
Match: A0A4D9CZ38_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ38_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.130e-12
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 QEFISQDAESSNSGQQRHASSLEEGQREVRSILGALVLSQLRSVWHTQTAQVQGEQYLFCLVVDAVRTMLAA 216
            Q+F SQ+  +S    QRHA++LE GQREVR+I+G+++LSQLR+ WH QTA  Q E YLF L + A+RT LA+
Sbjct:  288 QDFDSQEYATSG---QRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQLAS 356
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12931.2442.1 vs. uniprot
Match: D7FSF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF5_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.400e-11
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:   46 QRHASSLEEGQREVRSILGALVLSQLRSVWHTQTAQVQGEQYLFCLVVDAVRT 204
            QRHA++LE GQRE+RSI+G+++LSQLR+ +H   AQVQGEQYLF LV+ A+RT
Sbjct:  181 QRHAATLEHGQREIRSIVGSVLLSQLRTTYHNHLAQVQGEQYLFALVLQAIRT 233
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12931.2442.1 vs. uniprot
Match: A0A835YPU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.230e-10
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   46 QRHASSLEEGQREVRSILGALVLSQLRSVWHTQTAQVQGEQYLFCLVVDAVRTML 210
            QRHA++LE GQRE+RSI+G+++LSQLR+ W    A+ Q EQYLF L VDA+RT L
Sbjct:  282 QRHAATLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTAL 336
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12931.2442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FQ14_ECTSI3.320e-2778.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD93_9PHAE3.720e-2678.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TQZ3_9STRA4.830e-1255.56Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9CZ38_9STRA5.130e-1255.56Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
D7FSF5_ECTSI1.400e-1166.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YPU0_9STRA4.230e-1061.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12931contigH-canaliculatus_F_contig12931:824..2195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size762
Cds size762
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12931.2442.1prot_H-canaliculatus_F_contig12931.2442.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12931 824..2195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929023.9439945-CDS-H-canaliculatus_F_contig12931:823..12171622929023.9439945-CDS-H-canaliculatus_F_contig12931:823..1217Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12931 824..1217 -
1696845651.4519732-CDS-H-canaliculatus_F_contig12931:823..12171696845651.4519732-CDS-H-canaliculatus_F_contig12931:823..1217Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12931 824..1217 -
1622929023.9640038-CDS-H-canaliculatus_F_contig12931:1439..16391622929023.9640038-CDS-H-canaliculatus_F_contig12931:1439..1639Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12931 1440..1639 -
1696845651.4639244-CDS-H-canaliculatus_F_contig12931:1439..16391696845651.4639244-CDS-H-canaliculatus_F_contig12931:1439..1639Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12931 1440..1639 -
1622929024.004268-CDS-H-canaliculatus_F_contig12931:2027..21951622929024.004268-CDS-H-canaliculatus_F_contig12931:2027..2195Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12931 2028..2195 -
1696845651.475874-CDS-H-canaliculatus_F_contig12931:2027..21951696845651.475874-CDS-H-canaliculatus_F_contig12931:2027..2195Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12931 2028..2195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12931.2442.1

>prot_H-canaliculatus_F_contig12931.2442.1 ID=prot_H-canaliculatus_F_contig12931.2442.1|Name=mRNA_H-canaliculatus_F_contig12931.2442.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=254bp
QEFISQDAESSNSGQQRHASSLEEGQREVRSILGALVLSQLRSVWHTQTA
QVQGEQYLFCLVVDAVRTMLAAHSAARHDDDLMAVDEEERCAAEERLQRR
RQKRKEKKRAGKAQLQLSASASAAPAAGDASNLSAAAAAAATTAAAGTGV
GGRRGGSAGSAVLGRRTTNGTAGVAAPTAGAAAAAFSTSPGKPGKKQPLH
THNHNQDRAHHHHHHHHHHHRNTDPVESERAAPCLCDSTRGVFGGGGGGG
GGGE
back to top

mRNA from alignment at H-canaliculatus_F_contig12931:824..2195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12931.2442.1 ID=mRNA_H-canaliculatus_F_contig12931.2442.1|Name=mRNA_H-canaliculatus_F_contig12931.2442.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12931:824..2195- (Hapterophycus canaliculatus Oshoro5f female)
CAGGAATTCATCTCGCAGGATGCGGAGTCCTCCAACTCGGGGCAGCAGCG
GCACGCGTCGAGCTTGGAGGAAGGCCAAAGAGAAGTCCGTTCCATCCTCG
GCGCGCTGGTGTTAAGCCAGCTGCGATCGGTGTGGCACACGCAGACGGCG
CAGGTTCAGGGAGAGCAGGTGAGCTGCTGGGGTACTCACTCGCTGAGGCT
GGAATTCATACCGCGGACGTTTGTCTCTTTTTTTCCGTTGGGGTTGACGG
CGTTCGTTGGTAGCAGGCTGACTGTTCGGTATTTTGGCGCTGATCTTGTC
TTCGCTGGTGGTCGCTAGTGTGCACGCACACCCCGTCCGTGAGGCCCTCG
TCAGATCGCAGACCGGACAAAGGTCAGTTTTCGAGGCATCTCCTCTCCCT
GCCATTGCTGCAGAATGCTGCTGTACCTACCTTTCCTCCCGCTTTTCTAG
CCGTGCCCGCCTCCGACCCCACCCCTGTCGCTTCCCCTCTCATGTTCTGC
ACTGCCTCCTTCGTCCCGACACGCCCCCCTCCCCCCCGTCTTCCCCTCCA
ATCTAGTATCTGTTCTGCCTTGTGGTGGACGCGGTTCGGACGATGCTTGC
GGCCCACAGCGCGGCGCGGCACGACGACGACCTGATGGCAGTCGACGAAG
AGGAGAGATGCGCCGCCGAGGAAAGGCTCCAGAGGCGGCGCCAGAAGCGG
AAGGAGAAAAAGCGGGCGGGGAAGGCGCAGCTCCAGCTCTCCGCGTCGGC
CTCGGCGTCGACCTCCGCCTCCGGCAGCTCCGGCGGCTCCGGCGGCTCCG
GCGGCGATGGCGGCGATGGCGGCAGCGGCGATGGGACGGGGCGATCGGCG
GCGGACAAGGAGAAACCGTCGCGCCGACAGAAGCGCAAAGAGCGGAAGCG
GGCGGAGAAGGCGCAGGTGCTGTCCGCGTCGCCCCCTGCCTCTACCTCTG
GTGGCGGCGGCGGTAGCGGCGAGGACAGGGCTCCGGCGGCGGGGGATGCA
TCGAATTTATCGGCTGCGGCAGCTGCGGCAGCGACGACGGCGGCGGCGGG
GACAGGTGTGGGTGGGAGACGTGGCGGCAGTGCAGGTTCTGCCGTGTTGG
GGCGCCGGACGACCAATGGCACCGCTGGTGTTGCCGCTCCTACCGCTGGT
GCTGCGGCGGCTGCTTTCTCTACTTCTCCAGGCAAACCGGGCAAGAAGCA
GCCTCTGCACACCCACAACCACAACCAAGATCGCGCCCACCACCACCACC
ACCACCACCACCACCACCACCGTAATACCGACCCGGTGGAGTCGGAGCGC
GCGGCACCATGCCTGTGTGATTCAACTAGAGGAGTTTTCGGAGGGGGCGG
CGGGGGCGGCGGGGGCGGTGAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12931:824..2195-

>mRNA_H-canaliculatus_F_contig12931.2442.1 ID=mRNA_H-canaliculatus_F_contig12931.2442.1|Name=mRNA_H-canaliculatus_F_contig12931.2442.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1524bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12931:824..2195- (Hapterophycus canaliculatus Oshoro5f female)
CAGGAATTCATCTCGCAGGATGCGGAGTCCTCCAACTCGGGGCAGCAGCG
GCACGCGTCGAGCTTGGAGGAAGGCCAAAGAGAAGTCCGTTCCATCCTCG
GCGCGCTGGTGTTAAGCCAGCTGCGATCGGTGTGGCACACGCAGACGGCG
CAGGTTCAGGGAGAGCAGCAGGAATTCATCTCGCAGGATGCGGAGTCCTC
CAACTCGGGGCAGCAGCGGCACGCGTCGAGCTTGGAGGAAGGCCAAAGAG
AAGTCCGTTCCATCCTCGGCGCGCTGGTGTTAAGCCAGCTGCGATCGGTG
TGGCACACGCAGACGGCGCAGGTTCAGGGAGAGCAGTATCTGTTCTGCCT
TGTGGTGGACGCGGTTCGGACGATGCTTGCGGCCCACAGCGCGGCGCGGC
ACGACGACGACCTGATGGCAGTCGACGAAGAGGAGAGATGCGCCGCCGAG
GAAAGGCTCCAGAGGCGGCGCCAGAAGCGGAAGGAGAAAAAGCGGGCGGG
GAAGGCGCAGCTCCAGCTCTCCGCGTCGGCCTCGGCTATCTGTTCTGCCT
TGTGGTGGACGCGGTTCGGACGATGCTTGCGGCCCACAGCGCGGCGCGGC
ACGACGACGACCTGATGGCAGTCGACGAAGAGGAGAGATGCGCCGCCGAG
GAAAGGCTCCAGAGGCGGCGCCAGAAGCGGAAGGAGAAAAAGCGGGCGGG
GAAGGCGCAGCTCCAGCTCTCCGCGTCGGCCTCGGCGGCTCCGGCGGCGG
GGGATGCATCGAATTTATCGGCTGCGGCAGCTGCGGCAGCGACGACGGCG
GCGGCGGGGACAGGTGTGGGTGGGAGACGTGGCGGCAGTGCAGGTTCTGC
CGTGTTGGGGCGCCGGACGACCAATGGCACCGCTGGTGTTGCCGCTCCTA
CCGCTGGTGCTGCGGCGGCTGCTTTCTCTACTTCTCCAGGCAAACCGGGC
AAGAAGCAGCCTCTGCACACCCACAACCACAACCAAGATCGCGCCCACCA
CCACCACCACCACCACCACCACCACCACCGTAATACCGACCCGGTGGAGT
CGGAGCGCGCGGCACCATGCCTGTGTGATTCAACTAGAGGAGTTTTCGGA
GGGGGCGGCGGGGGCGGCGGGGGCGGTGAGGGCTCCGGCGGCGGGGGATG
CATCGAATTTATCGGCTGCGGCAGCTGCGGCAGCGACGACGGCGGCGGCG
GGGACAGGTGTGGGTGGGAGACGTGGCGGCAGTGCAGGTTCTGCCGTGTT
GGGGCGCCGGACGACCAATGGCACCGCTGGTGTTGCCGCTCCTACCGCTG
GTGCTGCGGCGGCTGCTTTCTCTACTTCTCCAGGCAAACCGGGCAAGAAG
CAGCCTCTGCACACCCACAACCACAACCAAGATCGCGCCCACCACCACCA
CCACCACCACCACCACCACCACCGTAATACCGACCCGGTGGAGTCGGAGC
GCGCGGCACCATGCCTGTGTGATTCAACTAGAGGAGTTTTCGGAGGGGGC
GGCGGGGGCGGCGGGGGCGGTGAG
back to top