mRNA_H-canaliculatus_F_contig1289.2407.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1289.2407.1
Unique NamemRNA_H-canaliculatus_F_contig1289.2407.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1289.2407.1 vs. uniprot
Match: D7FKA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA4_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 9.000e-76
Identity = 137/232 (59.05%), Postives = 164/232 (70.69%), Query Frame = 1 
Query:    1 MSWAEGRTASMPSGATDDRREALDRVDGLLRALAQDKNLQDDLKHKDVRKALHHWTGEERLSQDEADELMEDNYRVQSVCSRMVELQRLCKQASIGLPLPRVLAGIGLYEQLGEAAVAAPSARINSGQAEATNSQRRRKAPQPEASSKDQGEGAPQMAGEGASGG-----GGRENEPSWRQALIDEVLRLAGVCVCALVFTLLLKRYRGDDPLGKGL-AENQEASSAGQDEL 678
            MSWAEGR A+MP+GAT  R+EALDRVDG+LRALA+DK LQDDL++ DV++AL HWTG+ R+SQD ADELMEDNYR+QSVCSRM ELQ LCKQASIGLPL  VLAG GLY+ L +   A+ +A   SG      + R        +S   + +GA       A+ G     G  E+EPSWR+AL +E LRL  VC+CALVFTLLLK YRGDDPLGKGL  + Q   SAG+ EL
Sbjct:    1 MSWAEGREAAMPAGATGSRQEALDRVDGMLRALARDKLLQDDLRNTDVKRALEHWTGQNRMSQDHADELMEDNYRIQSVCSRMAELQSLCKQASIGLPLSHVLAGKGLYDNLDQPGQASAAATSGSGGNAVDQTGRPTSTSDGSSSGLQRRKGATAKGLHDATAGAEVGTGKEEDEPSWRRALAEEALRLTFVCLCALVFTLLLKHYRGDDPLGKGLPGQQQTPPSAGEGEL 232
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BLAST of mRNA_H-canaliculatus_F_contig1289.2407.1 vs. uniprot
Match: A0A2R5G976_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G976_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 8.110e-15
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:   67 LDRVDGLLRALAQDKNLQDDLKHKDVRKALHHWTGEERLSQDEADELMEDNYRVQSVCSRMVELQRLCKQASIGLPLPRVLAG 315
            ++RV G+L AL +DKNLQ+DL+ KDV  A+ HWTG  RLS +EA    E+N RV+ V S++  LQ   + A IG+P+  +LAG
Sbjct:    1 MERVKGVLEALQKDKNLQEDLRDKDVLAAIDHWTGRNRLSTEEASRRFEENGRVRQVMSKLQRLQAESQAAGIGVPIMALLAG 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1289.2407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKA4_ECTSI9.000e-7659.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R5G976_9STRA8.110e-1549.40Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1289contigH-canaliculatus_F_contig1289:4919..8346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003360.1
Exons5
Model size681
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1289.2407.1prot_H-canaliculatus_F_contig1289.2407.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1289 4919..8346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929019.8947012-CDS-H-canaliculatus_F_contig1289:4918..49581622929019.8947012-CDS-H-canaliculatus_F_contig1289:4918..4958Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 4919..4958 +
1696845649.8038013-CDS-H-canaliculatus_F_contig1289:4918..49581696845649.8038013-CDS-H-canaliculatus_F_contig1289:4918..4958Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 4919..4958 +
1622929019.9101744-CDS-H-canaliculatus_F_contig1289:5696..57671622929019.9101744-CDS-H-canaliculatus_F_contig1289:5696..5767Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 5697..5767 +
1696845649.8140807-CDS-H-canaliculatus_F_contig1289:5696..57671696845649.8140807-CDS-H-canaliculatus_F_contig1289:5696..5767Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 5697..5767 +
1622929019.9265184-CDS-H-canaliculatus_F_contig1289:6272..63851622929019.9265184-CDS-H-canaliculatus_F_contig1289:6272..6385Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 6273..6385 +
1696845649.8234036-CDS-H-canaliculatus_F_contig1289:6272..63851696845649.8234036-CDS-H-canaliculatus_F_contig1289:6272..6385Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 6273..6385 +
1622929019.9478593-CDS-H-canaliculatus_F_contig1289:7422..75401622929019.9478593-CDS-H-canaliculatus_F_contig1289:7422..7540Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 7423..7540 +
1696845649.8322113-CDS-H-canaliculatus_F_contig1289:7422..75401696845649.8322113-CDS-H-canaliculatus_F_contig1289:7422..7540Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 7423..7540 +
1622929019.9653993-CDS-H-canaliculatus_F_contig1289:8007..83461622929019.9653993-CDS-H-canaliculatus_F_contig1289:8007..8346Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 8008..8346 +
1696845649.8422308-CDS-H-canaliculatus_F_contig1289:8007..83461696845649.8422308-CDS-H-canaliculatus_F_contig1289:8007..8346Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 8008..8346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1289.2407.1

>prot_H-canaliculatus_F_contig1289.2407.1 ID=prot_H-canaliculatus_F_contig1289.2407.1|Name=mRNA_H-canaliculatus_F_contig1289.2407.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=227bp
MSWAEGRTASMPSGATDDRREALDRVDGLLRALAQDKNLQDDLKHKDVRK
ALHHWTGEERLSQDEADELMEDNYRVQSVCSRMVELQRLCKQASIGLPLP
RVLAGIGLYEQLGEAAVAAPSARINSGQAEATNSQRRRKAPQPEASSKDQ
GEGAPQMAGEGASGGGGRENEPSWRQALIDEVLRLAGVCVCALVFTLLLK
RYRGDDPLGKGLAENQEASSAGQDEL*
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mRNA from alignment at H-canaliculatus_F_contig1289:4919..8346+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1289.2407.1 ID=mRNA_H-canaliculatus_F_contig1289.2407.1|Name=mRNA_H-canaliculatus_F_contig1289.2407.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3428bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1289:4919..8346+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCTGGGCCGAAGGGCGCACAGCATCCATGCCCTCAGGTATCAATGT
GTTTCCTTCCATCAGACATTGTTGTCGCGCGACATGCTTTATTAAGACCG
CGTCTACGGCCCAAGTATCCACAGTTTTTTCTTTCTACTGACCGGCACAG
CATGAGCACCCCCCGGATGTAAATGTTACCTGACATTGTAGAGTAACGCT
TGAAGTACCCAGCGTGGCCCACATTGTAGGAATAAACATACTTCATCAGG
GACTGGCAAAAACGGAAAAATGGTGACTTTCGTCGGATCCATGTCAACTT
GGTCTGAATAGAGCCAGCCAAAAGTGCTCTCCTGAGGAGGCGTCCCTCGT
GTTTCGTGTTTCGTGTTCCTCGTACCAGTACTTGTAGTCTCATCAAGATT
CGCACTTAAAGGTAAAGGTTTGAGATACTTGCACAAGACTCGAAATACAA
GACAACACTCAACTGCCGTGACGGAGTCTCGACTGCAGGCCATAACAAAA
GGCGCAACAAGCGAGGCGCTATCGATATCCAGACATCGAAAGCACACACA
TCGGTCAAGGGATATCGTTTTCTTTCGAGAGAGCGACTACAGGATGCTGC
CCTGAGGCTGCCCGTTCGGGGGGGTTGCTTCCGGCTTCCCACGCTACGAA
TACGACTTGTACGCTATACCTTTAGCATGGTGACCACTTCCGACCTCCGA
CACAACAGCAGTGCATCATACGAAAAACCTCCGAAAATGAAGAGCGTTCC
CGTTGCCCCGTGCTCGGTTGAGCGGCAGGAGCGACCGATGACCGGCGAGA
GGCCTTGGACAGGGTGGACGGATTGCTTCGTGCGCTGGCGCAGGACAAGG
TGGGGGGAGAGATGCGGATCACGCATCGCCAGGATGTACTTGAAAGTTCG
ATCGCGTGCGAGCGTGCGAACTGACTGCCATCGGGACGAGCTTAAGACAT
TGCGAGTAACATGTAAACGGGTGGCGAGCAGCGTTGGGCGTGCCGTTGGG
GCTTTAGGTTTCGCCAGCCATGGTCCAAGTACGAGCGCACATGGAAAAAT
CTGGGTCTTGACGACGACCAGCGCTGCTGGGGGACGTGGAAGCATACCCA
GCCGTTGAAGCAGGCGAGGCAACAAAAGGCCGTCAACTACAGTCGCCACC
ACCAAAGATGGATTGTGCAGAGCTTCTGCCGGTTACTGCCCTTGAAAAAG
CTGACCAGCGCAACATCAGTGCCACCGCTTATCGTGACCCCTGTTCACAA
GCAACGCGCTCGTGTCCTTTTTTTTCTCCTTTGCTCCTATCTCGACTGAA
GATCGCTACTTGCACCTGTACCCCTTAATGCTGTTCCCCTCGCACCTCGC
ACAGAACCTGCAAGACGACTTGAAGCACAAGGACGTACGTAAGGCTCTTC
ATCACTGGACCGGCGAAGAACGGCTGTCCCAAGACGAGGCGGACGAGCTC
ATGGAAGACAACTACAGGTCCGCGCAAGGTGTTGGTATTGGTGTTGGTGT
TGGCGGCCATCAGGAAAAAGAAGCATCATCCACCAACCATGTCTTGGATA
TTTTCTTGCACTGCGTTTTGGGCTTCTCGTCGGCTTCTTCCCAAGAGGTC
GTCGATCGATCAAGATATCCTTGGGTTAACGTGGTACCCGTAGGTGAAAC
ACAGATGTCCATCAGGTGAATGAGGTCTATTCAGGTTTTGCCACCTCTCA
GTTGCTGGCAGAGCCCCTGCCGTATTCTACTCTACCGACGCGACGAACAC
TCGAATAAAGGAAAGGAAAGAGGCGCGGTCAGGCTCATCTATGATGTGAA
ATCTATGATGTGATATCTATGAAATGATACCTATGATCGTCTCCGAAAGA
GCGTGACTGGTTAGTATAGTTCTGGAACCCGCGCCCGCCAAGCACGCGTA
GATATTCCTGGTCCTCCCGATGTTCACGAGTCGTGACGAAAAGGAAAGCA
TTTGTTGTCGGCATTACATTTTTTCTCGCTCTAGGACGGCCAGGTGAGAA
AATTGATCCTCTTGTTGGACGAGCCTGCTAACGGTGGGGACAAGCGTTCC
TTTCCTTGCGTTGCTTGACGCATCATGGCGAATGGTCAATCGTGGTCCAA
TCATGGTGCATCGTGAACGCCAAGGGGAAGGGCAAGAAAATATCTCAAGG
GCCATTGGGGACGATCGTCTTCCTGGTTTCGAAGACTCATTTGACAATAT
CCCGAGTATCGATGCCGGCGAGCTCTGCCCCTGGTGCGTGCCACTCACAC
GCCAGCAATGTTCCCGTCGCAATTTAAATGTTGACCGGGAACAGGACGCT
GAGAATGCCGCCTCAGCGCCCTGCTGCCGTCCTCCTCCAGAAAGTTCGTG
GTATATAACACCATTGCTTTTAGGCACTGACTCGCGTGATGAAAGTGTAC
GGGCATCCGAGTGACCCCTCCTCCTGCTCCGTGCTGATGTAAAATACCCA
TCGATGTTTCTTCCTGGTGCTGCGACTGCAACTGCTCCTATCGCAACCTC
TCAGAGTGCAGTCGGTTTGCTCCAGAATGGTGGAACTACAAAGACTTTGC
AAGCAGGCCTCCATAGGATTGCCGCTCCCGCGCGTACTCGCTGGGATAGG
TTTGTACGAGCAGCTTGGCGAGGTGAGCGGTGACGGTTTCATGTTTCCTG
CTCTTGGTAATAAGCCGGGCCTGTGCAAAGTCGTGGCTCCCTTTGAAAGG
GTTCTTAAGGTGTGGACAGCCGGAGTAGTGCATCAACAACATGCACAACA
CCATTCGGTTGATTCAGTAGTCCAGACGAAGCAGCACAAGCATCACGAAC
AGCAACAATCTTAATCTTGGATTACAGCGACAGAACGGCGCAAAAAAGAA
GGAAATGAAGACCACGGATGGTGGACGCACCACAGCATCAAAAATCGCGG
CCGTCGAGAGATGTGCATGACCGCAGCACTTGTCCCTAATCGCAGCGCCT
TATCTACCACACACTGTTCTCTTCCAACCACGCAGCATGGCAAGCAGCCC
CAACGTCTGTCGCTTGAACATCCGCAATCCCCCGCTTTCAACGTCAGGCC
CGGGCAGGACTTGGCCAAAGTTCTGCCGCGGAACAAGAGGCGGCCGTCGC
AGCACCATCAGCAAGAATAAACAGTGGTCAGGCAGAGGCGACAAACTCGC
AGCGACGCCGGAAAGCGCCCCAGCCAGAGGCGAGTAGCAAGGATCAAGGC
GAAGGGGCTCCGCAGATGGCAGGAGAAGGGGCATCGGGGGGAGGGGGGCG
AGAGAACGAGCCTTCTTGGCGACAAGCGCTCATTGACGAGGTGTTGAGGC
TGGCGGGCGTGTGCGTCTGCGCCCTGGTGTTCACCCTTCTGCTCAAGCGT
TACCGTGGAGACGATCCTCTTGGAAAGGGTTTGGCAGAAAATCAGGAGGC
GTCTTCTGCGGGACAGGACGAGCTGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1289:4919..8346+

>mRNA_H-canaliculatus_F_contig1289.2407.1 ID=mRNA_H-canaliculatus_F_contig1289.2407.1|Name=mRNA_H-canaliculatus_F_contig1289.2407.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1362bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1289:4919..8346+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCTGGGCCGAAGGGCGCACAGCATCCATGCCCTCAGATGTCCTGGG
CCGAAGGGCGCACAGCATCCATGCCCTCAGGAGCGACCGATGACCGGCGA
GAGGCCTTGGACAGGGTGGACGGATTGCTTCGTGCGCTGGCGCAGGACAA
GGAGCGACCGATGACCGGCGAGAGGCCTTGGACAGGGTGGACGGATTGCT
TCGTGCGCTGGCGCAGGACAAGAACCTGCAAGACGACTTGAAGCACAAGG
ACGTACGTAAGGCTCTTCATCACTGGACCGGCGAAGAACGGCTGTCCCAA
GACGAGGCGGACGAGCTCATGGAAGACAACTACAGAACCTGCAAGACGAC
TTGAAGCACAAGGACGTACGTAAGGCTCTTCATCACTGGACCGGCGAAGA
ACGGCTGTCCCAAGACGAGGCGGACGAGCTCATGGAAGACAACTACAGAG
TGCAGTCGGTTTGCTCCAGAATGGTGGAACTACAAAGACTTTGCAAGCAG
GCCTCCATAGGATTGCCGCTCCCGCGCGTACTCGCTGGGATAGGTTTGTA
CGAGCAGCTTGGCGAGAGTGCAGTCGGTTTGCTCCAGAATGGTGGAACTA
CAAAGACTTTGCAAGCAGGCCTCCATAGGATTGCCGCTCCCGCGCGTACT
CGCTGGGATAGGTTTGTACGAGCAGCTTGGCGAGGCGGCCGTCGCAGCAC
CATCAGCAAGAATAAACAGTGGTCAGGCAGAGGCGACAAACTCGCAGCGA
CGCCGGAAAGCGCCCCAGCCAGAGGCGAGTAGCAAGGATCAAGGCGAAGG
GGCTCCGCAGATGGCAGGAGAAGGGGCATCGGGGGGAGGGGGGCGAGAGA
ACGAGCCTTCTTGGCGACAAGCGCTCATTGACGAGGTGTTGAGGCTGGCG
GGCGTGTGCGTCTGCGCCCTGGTGTTCACCCTTCTGCTCAAGCGTTACCG
TGGAGACGATCCTCTTGGAAAGGGTTTGGCAGAAAATCAGGAGGCGTCTT
CTGCGGGACAGGACGAGCTGTGAGCGGCCGTCGCAGCACCATCAGCAAGA
ATAAACAGTGGTCAGGCAGAGGCGACAAACTCGCAGCGACGCCGGAAAGC
GCCCCAGCCAGAGGCGAGTAGCAAGGATCAAGGCGAAGGGGCTCCGCAGA
TGGCAGGAGAAGGGGCATCGGGGGGAGGGGGGCGAGAGAACGAGCCTTCT
TGGCGACAAGCGCTCATTGACGAGGTGTTGAGGCTGGCGGGCGTGTGCGT
CTGCGCCCTGGTGTTCACCCTTCTGCTCAAGCGTTACCGTGGAGACGATC
CTCTTGGAAAGGGTTTGGCAGAAAATCAGGAGGCGTCTTCTGCGGGACAG
GACGAGCTGTGA
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