mRNA_H-canaliculatus_F_contig12799.2324.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12799.2324.1
Unique NamemRNA_H-canaliculatus_F_contig12799.2324.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12799.2324.1 vs. uniprot
Match: D8LPI1_ECTSI (Sulfhydryl oxidase n=2 Tax=root TaxID=1 RepID=D8LPI1_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 7.510e-25
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    1 NKNDDNMNNNNGLCTSTWGSPADGFFYTVAAGYPVDPDEYNDVRGNTRGHTKRSYAAL-KNTGHVLQCRF 207
            N+N++ MN+NNGLCTSTWG P   F + VAAGYPV PDEY+D+RGN RGHT+R Y++  KNTGHVL CRF
Sbjct:    3 NENNEKMNDNNGLCTSTWGPPGWFFLHCVAAGYPVHPDEYDDIRGNARGHTRRGYSSFFKNTGHVLPCRF 72
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BLAST of mRNA_H-canaliculatus_F_contig12799.2324.1 vs. uniprot
Match: A0A6H5JX91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX91_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.120e-9
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   73 FFYTVAAGYPVDPDEYNDVRGNTRGHTKRSYAAL-KNTGHVLQCRF 207
            F + VAAG+PVDPDEY+D+RGN RG   + Y +  KN GHVL CRF
Sbjct:  379 FLHCVAAGFPVDPDEYDDIRGNMRGKINKHYMSFFKNAGHVLPCRF 424
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12799.2324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPI1_ECTSI7.510e-2567.14Sulfhydryl oxidase n=2 Tax=root TaxID=1 RepID=D8LP... [more]
A0A6H5JX91_9PHAE2.120e-960.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12799contigH-canaliculatus_F_contig12799:334..880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score108.2
Seed ortholog evalue1.5e-21
Seed eggNOG ortholog654926.Q8QNC1_ESV1K
EggNOG free text desc.Erv1 / Alr family
EggNOG OGs4QB94@10239,4QVJI@35237
Ec32 ortholog descriptionEsV-1-161 thiol oxidoreductase
Ec32 orthologEc-06_005300.1
COG Functional cat.S
Best tax leveldsDNA viruses, no RNA stage
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size496
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12799.2324.1prot_H-canaliculatus_F_contig12799.2324.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12799 352..555 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929001.1622086-UTR-H-canaliculatus_F_contig12799:333..3511622929001.1622086-UTR-H-canaliculatus_F_contig12799:333..351Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12799 334..351 +
1696845645.126002-UTR-H-canaliculatus_F_contig12799:333..3511696845645.126002-UTR-H-canaliculatus_F_contig12799:333..351Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12799 334..351 +
1622929001.2053223-UTR-H-canaliculatus_F_contig12799:555..6721622929001.2053223-UTR-H-canaliculatus_F_contig12799:555..672Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12799 556..672 +
1696845645.1485014-UTR-H-canaliculatus_F_contig12799:555..6721696845645.1485014-UTR-H-canaliculatus_F_contig12799:555..672Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12799 556..672 +
1622929001.2267551-UTR-H-canaliculatus_F_contig12799:723..8801622929001.2267551-UTR-H-canaliculatus_F_contig12799:723..880Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12799 724..880 +
1696845645.1576514-UTR-H-canaliculatus_F_contig12799:723..8801696845645.1576514-UTR-H-canaliculatus_F_contig12799:723..880Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12799 724..880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929001.182875-CDS-H-canaliculatus_F_contig12799:351..5551622929001.182875-CDS-H-canaliculatus_F_contig12799:351..555Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12799 352..555 +
1696845645.1362002-CDS-H-canaliculatus_F_contig12799:351..5551696845645.1362002-CDS-H-canaliculatus_F_contig12799:351..555Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12799 352..555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12799.2324.1

>prot_H-canaliculatus_F_contig12799.2324.1 ID=prot_H-canaliculatus_F_contig12799.2324.1|Name=mRNA_H-canaliculatus_F_contig12799.2324.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=68bp
MNNNNGLCTSTWGSPADGFFYTVAAGYPVDPDEYNDVRGNTRGHTKRSYA
ALKNTGHVLQCRFWNCI*
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mRNA from alignment at H-canaliculatus_F_contig12799:334..880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12799.2324.1 ID=mRNA_H-canaliculatus_F_contig12799.2324.1|Name=mRNA_H-canaliculatus_F_contig12799.2324.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=547bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12799:334..880+ (Hapterophycus canaliculatus Oshoro5f female)
AATAAGAATGATGATAATATGAACAACAACAACGGGCTTTGTACGAGCAC
CTGGGGATCACCAGCGGATGGGTTTTTTTACACTGTCGCCGCTGGTTACC
CCGTTGATCCGGACGAATATAATGACGTTCGCGGCAACACGAGAGGGCAT
ACCAAAAGAAGTTACGCGGCATTGAAGAATACAGGACACGTTCTGCAGTG
CCGGTTCTGGAATTGTATCTAGCTTTCGCGGCCGAAGTCCCAATCGAACA
GTTCATTGGCTCGCGACACAAGCTGTTTGAATGGCTTTTCATCATACACA
ACAAAGTGAACGAAAAGACAGGAGACAAGCAAGAAACCAGTCTTCAGTCC
AATATTATTATTTCGTTTGCCCTCCGACAATTGCAGATAGATCCAACCAA
TGCAACTCATCTTCAGTCCATTGTGCACAAATACGAAAAGTGTAGAGCGT
CGTGCAATACCAATAAAAACGCCAAAGGGTGCACCGAGCCCGCAAAGAAT
ATGTCAAGATGAAATGCAGGGTTGTCTTCGAACCCGTAGTCAGAAAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12799:334..880+

>mRNA_H-canaliculatus_F_contig12799.2324.1 ID=mRNA_H-canaliculatus_F_contig12799.2324.1|Name=mRNA_H-canaliculatus_F_contig12799.2324.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=408bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12799:334..880+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACAACAACAACGGGCTTTGTACGAGCACCTGGGGATCACCAGCGGA
TGGGTTTTTTTACACTGTCGCCGCTGGTTACCCCGTTGATCCGGACGAAT
ATAATGACGTTCGCGGCAACACGAGAGGGCATACCAAAAGAAGTTACGCG
GCATTGAAGAATACAGGACACGTTCTGCAGTGCCGGTTCTGGAATTGTAT
CTAGATGAACAACAACAACGGGCTTTGTACGAGCACCTGGGGATCACCAG
CGGATGGGTTTTTTTACACTGTCGCCGCTGGTTACCCCGTTGATCCGGAC
GAATATAATGACGTTCGCGGCAACACGAGAGGGCATACCAAAAGAAGTTA
CGCGGCATTGAAGAATACAGGACACGTTCTGCAGTGCCGGTTCTGGAATT
GTATCTAG
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