mRNA_H-canaliculatus_F_contig12795.2321.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12795.2321.1
Unique NamemRNA_H-canaliculatus_F_contig12795.2321.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12795.2321.1 vs. uniprot
Match: D8LI15_ECTSI (Folate/biopterin transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI15_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 9.630e-28
Identity = 74/131 (56.49%), Postives = 80/131 (61.07%), Query Frame = 1 
Query:    1 MSRRPSVETGVRSNG----------AATGERTPLLSSAYSSGNNDSGGDAGDGDDLDDDRSPFLPTSTSAPSSGQKP-RRRPSLPALKKLDPYPGKGCGARTMNAAVRLRDSLVEALCCSSVTRWVNRHRN 360
            MSRRPSVETGVRSNG          A  GERTPLL             +A D D   DDR+  L       S G+ P +RRPSLPALKKLDPYPG G GART NA VR RD LVE LCCS V RW++RHRN
Sbjct:    1 MSRRPSVETGVRSNGSGXXXXGGRAAENGERTPLLFDD----------EAADHDLDQDDRASLLS------SGGRDPQKRRPSLPALKKLDPYPGDGLGARTANAMVRARDQLVETLCCSPVQRWIDRHRN 115
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BLAST of mRNA_H-canaliculatus_F_contig12795.2321.1 vs. uniprot
Match: D7G0X8_ECTSI (Probable maltose permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X8_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.040e-15
Identity = 60/126 (47.62%), Postives = 68/126 (53.97%), Query Frame = 1 
Query:    1 MSRRPSVETGVRSNG-----AATGERTPLLSSAYSSGNNDSGGDAGDGDDLDDDRSPFLPTSTSAPSSGQKPRRR-PSLPALKKLDPYPGKGCGARTMNAAVRLRDSLVEALCCSSVTRWVNRHRN 360
            MSRRPSVETG+RS G     A   ERTPLL S Y            D      D++P L       S  + P+ R PSLP LKKLDP+ G G GART NA VR RD LVE L       W++RHRN
Sbjct:    1 MSRRPSVETGLRSGGSGRRAAENDERTPLLFSKYRKE---------DDHXXXXDQAPLL-------SGERDPQERSPSLPTLKKLDPFLGDGLGARTANAIVRARDRLVETL-----QIWIDRHRN 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12795.2321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI15_ECTSI9.630e-2856.49Folate/biopterin transporter n=2 Tax=Ectocarpus Ta... [more]
D7G0X8_ECTSI1.040e-1547.62Probable maltose permease n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12795contigH-canaliculatus_F_contig12795:3047..3406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue2e-24
Seed eggNOG ortholog2880.D8LI15
EggNOG free text desc.BT1 family
EggNOG OGs29S8M@1,2RXD7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929000.6189404-CDS-H-canaliculatus_F_contig12795:3046..34061622929000.6189404-CDS-H-canaliculatus_F_contig12795:3046..3406Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12795 3047..3406 +
1696845645.0521388-CDS-H-canaliculatus_F_contig12795:3046..34061696845645.0521388-CDS-H-canaliculatus_F_contig12795:3046..3406Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12795 3047..3406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12795.2321.1prot_H-canaliculatus_F_contig12795.2321.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12795 3047..3406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12795.2321.1

>prot_H-canaliculatus_F_contig12795.2321.1 ID=prot_H-canaliculatus_F_contig12795.2321.1|Name=mRNA_H-canaliculatus_F_contig12795.2321.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=120bp
MSRRPSVETGVRSNGAATGERTPLLSSAYSSGNNDSGGDAGDGDDLDDDR
SPFLPTSTSAPSSGQKPRRRPSLPALKKLDPYPGKGCGARTMNAAVRLRD
SLVEALCCSSVTRWVNRHRN
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mRNA from alignment at H-canaliculatus_F_contig12795:3047..3406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12795.2321.1 ID=mRNA_H-canaliculatus_F_contig12795.2321.1|Name=mRNA_H-canaliculatus_F_contig12795.2321.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=360bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12795:3047..3406+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGCGGAGACCCTCGGTCGAAACGGGCGTACGAAGCAACGGTGCCGC
CACCGGGGAGCGAACTCCGTTGTTGTCAAGCGCCTACAGCAGTGGCAATA
ACGACAGCGGTGGCGACGCCGGCGATGGCGACGACTTGGACGACGATCGG
TCGCCGTTTTTGCCAACCTCAACGTCCGCACCGTCCTCGGGACAGAAGCC
ACGGCGACGCCCCTCCCTCCCCGCCCTCAAGAAGCTCGACCCGTACCCGG
GCAAGGGCTGCGGGGCGCGGACGATGAACGCGGCGGTTAGGCTTAGGGAT
AGCTTGGTGGAAGCGCTGTGCTGCAGCTCGGTCACGCGGTGGGTTAACCG
TCACAGAAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12795:3047..3406+

>mRNA_H-canaliculatus_F_contig12795.2321.1 ID=mRNA_H-canaliculatus_F_contig12795.2321.1|Name=mRNA_H-canaliculatus_F_contig12795.2321.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=720bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12795:3047..3406+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGCGGAGACCCTCGGTCGAAACGGGCGTACGAAGCAACGGTGCCGC
CACCGGGGAGCGAACTCCGTTGTTGTCAAGCGCCTACAGCAGTGGCAATA
ACGACAGCGGTGGCGACGCCGGCGATGGCGACGACTTGGACGACGATCGG
TCGCCGTTTTTGCCAACCTCAACGTCCGCACCGTCCTCGGGACAGAAGCC
ACGGCGACGCCCCTCCCTCCCCGCCCTCAAGAAGCTCGACCCGTACCCGG
GCAAGGGCTGCGGGGCGCGGACGATGAACGCGGCGGTTAGGCTTAGGGAT
AGCTTGGTGGAAGCGCTGTGCTGCAGCTCGGTCACGCGGTGGGTTAACCG
TCACAGAAACATGTCGCGGAGACCCTCGGTCGAAACGGGCGTACGAAGCA
ACGGTGCCGCCACCGGGGAGCGAACTCCGTTGTTGTCAAGCGCCTACAGC
AGTGGCAATAACGACAGCGGTGGCGACGCCGGCGATGGCGACGACTTGGA
CGACGATCGGTCGCCGTTTTTGCCAACCTCAACGTCCGCACCGTCCTCGG
GACAGAAGCCACGGCGACGCCCCTCCCTCCCCGCCCTCAAGAAGCTCGAC
CCGTACCCGGGCAAGGGCTGCGGGGCGCGGACGATGAACGCGGCGGTTAG
GCTTAGGGATAGCTTGGTGGAAGCGCTGTGCTGCAGCTCGGTCACGCGGT
GGGTTAACCGTCACAGAAAC
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