mRNA_H-canaliculatus_F_contig12783.2314.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12783.2314.1
Unique NamemRNA_H-canaliculatus_F_contig12783.2314.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12783.2314.1 vs. uniprot
Match: D7FR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR26_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 5.460e-60
Identity = 143/233 (61.37%), Postives = 164/233 (70.39%), Query Frame = 1 
Query:    1 GKGLERHLPPKDRNAALNAMKPFLRESNWDAAVLFALDEIHGRLEKNLRKATGEDGGSKGSALSSLGRGWEDIKRRAAEGWGXXXXXXXXXXXXXXXXXF-------FDELFGSDSQDFSPVG--LLTLSLLFG-AMARSSLQRRRYGRFEAKLAAIEAQRAMVPPSSPNAGDWPSERNPLSSPEPCPICLDVFTPAGSADGGGSASASGGLVGADGLPAATA-DCGHTFCRR 666
            GKGLER+LPP+DRNAALNAMKP LRE +WD AV+ AL+EIHGRL  NL KA G         LSSLG GWED+KR A++GWG  XXXXXXXXXXXXXXXF       F+  F        P G  LL LSLL+G A AR+SLQRRRY RFEAKLA IEAQRAM+P S+   G W   ++ L+S   CPICLD F+ A  ADG G+ +   GLVGADG+PAAT  DCGHTFC+R
Sbjct:   74 GKGLERYLPPRDRNAALNAMKPLLREGDWDGAVVLALEEIHGRLVGNLAKAAGGXXXXXXXXLSSLGWGWEDLKRWASDGWGGSXXXXXXXXXXXXXXXFRGFHLGGFENFFRESWNVDVPPGSVLLALSLLWGGATARASLQRRRYDRFEAKLAGIEAQRAMLPLSAAGGG-WLVGQDALASRGVCPICLDAFSEA--ADGSGADTK--GLVGADGMPAATLPDCGHTFCQR 301
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BLAST of mRNA_H-canaliculatus_F_contig12783.2314.1 vs. uniprot
Match: A0A6H5JG24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG24_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 2.900e-59
Identity = 146/237 (61.60%), Postives = 168/237 (70.89%), Query Frame = 1 
Query:    1 GKGLERHLPPKDRNAALNAMKPFLRESNWDAAVLFALDEIHGRLEKNLRKATGEDGGSKGSALSSLGRGWEDIKRRAAEGWGXXXXXXXXXXXXXXXXXF-----------FDELFGSDSQDFSPVG--LLTLSLLFG-AMARSSLQRRRYGRFEAKLAAIEAQRAMVPPSSPNAGDWPSERNPLSSPEPCPICLDVFTPAGSADGGGSASASGGLVGADGLPAATA-DCGHTFCRR 666
            GKGLER+LPP+DRNAALNAMKP LRE +WD AVL  L+EIH RL +NL KA G   G  G ALSSLG GWED+KRRA+ GW XXXXXXXXXXXXXXXXX            F+  FG + +   P G  LL LSLL+G A AR+SLQRRRY RFEAKLA IEAQRAM+P S+   G W   ++ L+S   CPICLD F+ A  ADG G+ +   GLVGAD +PAAT  DCGHTFC+R
Sbjct:   73 GKGLERYLPPRDRNAALNAMKPLLREGDWDGAVLLGLEEIHRRLFENLAKAAGGGDGGAG-ALSSLGWGWEDLKRRASGGWXXXXXXXXXXXXXXXXXXXXXXFRGFHLGGFENSFGENWKLDVPPGSVLLALSLLWGGATARASLQRRRYDRFEAKLAGIEAQRAMLPLSA--GGGWSVGQDALASRGVCPICLDAFSEA--ADGSGADTK--GLVGADRMPAATLPDCGHTFCQR 302
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12783.2314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR26_ECTSI5.460e-6061.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG24_9PHAE2.900e-5961.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12783contigH-canaliculatus_F_contig12783:1311..3247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-09_003760.1
Exons2
Model size669
Cds size669
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928999.7127347-CDS-H-canaliculatus_F_contig12783:1310..17621622928999.7127347-CDS-H-canaliculatus_F_contig12783:1310..1762Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12783 1311..1762 +
1696845644.7230992-CDS-H-canaliculatus_F_contig12783:1310..17621696845644.7230992-CDS-H-canaliculatus_F_contig12783:1310..1762Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12783 1311..1762 +
1622928999.7300365-CDS-H-canaliculatus_F_contig12783:3030..32471622928999.7300365-CDS-H-canaliculatus_F_contig12783:3030..3247Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12783 3031..3247 +
1696845644.7341437-CDS-H-canaliculatus_F_contig12783:3030..32471696845644.7341437-CDS-H-canaliculatus_F_contig12783:3030..3247Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12783 3031..3247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12783.2314.1prot_H-canaliculatus_F_contig12783.2314.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12783 1311..3247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12783.2314.1

>prot_H-canaliculatus_F_contig12783.2314.1 ID=prot_H-canaliculatus_F_contig12783.2314.1|Name=mRNA_H-canaliculatus_F_contig12783.2314.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=223bp
GKGLERHLPPKDRNAALNAMKPFLRESNWDAAVLFALDEIHGRLEKNLRK
ATGEDGGSKGSALSSLGRGWEDIKRRAAEGWGGGGGGGGGGGGGMFGGGF
FDELFGSDSQDFSPVGLLTLSLLFGAMARSSLQRRRYGRFEAKLAAIEAQ
RAMVPPSSPNAGDWPSERNPLSSPEPCPICLDVFTPAGSADGGGSASASG
GLVGADGLPAATADCGHTFCRR*
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mRNA from alignment at H-canaliculatus_F_contig12783:1311..3247+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12783.2314.1 ID=mRNA_H-canaliculatus_F_contig12783.2314.1|Name=mRNA_H-canaliculatus_F_contig12783.2314.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1937bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12783:1311..3247+ (Hapterophycus canaliculatus Oshoro5f female)
GGCAAGGGCCTGGAGAGGCACCTGCCGCCGAAGGACCGCAATGCGGCGCT
GAACGCCATGAAACCGTTCCTGAGAGAGAGCAACTGGGACGCCGCTGTCC
TCTTCGCGCTGGACGAGATACACGGCCGTCTGGAGAAGAACCTGAGGAAG
GCGACGGGCGAGGACGGCGGCAGCAAGGGGAGTGCCTTGTCCTCGCTGGG
GCGGGGCTGGGAGGACATCAAGCGGCGGGCGGCGGAAGGGTGGGGCGGCG
GGGGGGGTGGGGGTGGAGGCGGTGGAGGCGGCATGTTCGGGGGCGGATTT
TTCGACGAGCTTTTCGGCAGCGACAGCCAGGATTTCTCTCCGGTGGGGCT
GCTGACGTTGTCGTTGCTGTTCGGGGCGATGGCGAGGAGTTCTCTGCAGC
GGCGGCGGTACGGCCGCTTCGAGGCCAAGCTGGCCGCGATCGAAGCTCAA
AGGTGAGAACGGTGGTTGCGCCGCTTCTGCTTGATGCTCTCTTAGGTGGG
CCGGCCGCCCGCAGTCTGCATCGGCGCTGTCTTCTCACCGTAGTTTGTGC
ACCGCCGGTACGACTCGAACAGATGGTGTGTGCCACTTTGCCCACACAAT
TCATCGGAAGTTACACCACATCTCCAAAGTGAAATGGTGTTGGTGGGTAC
ATCCACAAACGACGGCCAGTGGTGTACTACCACGATCACTCAGGAGATTA
CGTGCTCCAGTACACTCGCATTGTACAATGAAAACAATGTGTGTGTGTAA
TTATTTAATTCTTGTTTTCGGGAGGACAATATATATATATATGGGTGGGG
GTAATTATTTAATTTTTGTTTTTGGGAGGACAACATAGAACACATCATCT
CCCGAGTGGGAGTACTCGTACACGGAAGTATCGCCAATGGGCGGTTCTGG
CTGCGAACGTAGGCGCTTAGAATTCTTTGTAGGATAGCCTCAGCCCAGCC
AAGACGCCCGAAGAGGCGACCCAAGTATTTCCGGCATTCCCCTGGGTAGG
CCTTTTACCTCTTCTTTTTTTCAGGCGAACGTCGGCAAGGAGCTTGTACC
GAACGGATGGATGTGAAGTCCAGGTGCTGCTCTTCGATGACGGCAGTCGC
CCGCTTGCGGTAGCCCACGGTTGCGAGCGAACACGAAGAGTATTTACATC
TGAGTGTAGCAGCCCCGCCAGCCGTCAAACACCGATCCGTTTTCCGTCTT
AGACTTTTGTCGGTGGGACGTGTAAGGGTCCGGAAAACGGCTGCAGGATG
ACCACGGAGGCGTGTTTTGCCCGTGTTCCCGCTCGGAAACGACTCAATGC
CGTTTCCGTGGTGAGAAGCGTGCTGCCTCGGGCGAGGGTAACACGAAAAG
CACCGTGTCGCAAGGGTTAGGGCTAGGGTTACAGAGGCTCGAGCTTGCCT
CCGGCGAGGCAAACCAAAAAGAGACAAACATGTTATTCCACCATAACGGA
CCCTCACCGTAACGAAAAAATCAACAAAAATCCTCCTGGGTCGTTCTTTT
GTCTCAGCGGAGGGTACTCCTTTGGTGTGGTTGACCCTTCCTTTCAAAAA
GAGCACGTGCCGCGAAGCCACCCCTCGCCACGCAAGCATATGCTCTCTTG
TGCCGACTGCGTAACCCGTCTTGAGCCAATCCCCCCCGCCGCCCGTCCCT
TTTCGCCACCCTCCTACACACCCCTTTTCCCTCCTCCCTTTCTGCGTCTC
CCCTCGCTGATCCGCCCCAGGGCGATGGTTCCGCCCTCCTCCCCGAACGC
CGGCGATTGGCCGAGCGAACGAAACCCCCTGTCATCGCCGGAGCCCTGTC
CGATCTGCCTGGATGTCTTCACGCCGGCGGGGTCGGCGGACGGTGGCGGC
AGCGCCAGCGCCAGCGGTGGTTTGGTGGGCGCGGACGGCCTGCCGGCGGC
CACGGCGGACTGCGGGCACACGTTCTGCCGAAGGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12783:1311..3247+

>mRNA_H-canaliculatus_F_contig12783.2314.1 ID=mRNA_H-canaliculatus_F_contig12783.2314.1|Name=mRNA_H-canaliculatus_F_contig12783.2314.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1338bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12783:1311..3247+ (Hapterophycus canaliculatus Oshoro5f female)
GGCAAGGGCCTGGAGAGGCACCTGCCGCCGAAGGACCGCAATGCGGCGCT
GAACGCCATGAAACCGTTCCTGAGAGAGAGCAACTGGGACGCCGCTGTCC
TCTTCGCGCTGGACGAGATACACGGCCGTCTGGAGAAGAACCTGAGGAAG
GCGACGGGCGAGGACGGCGGCAGCAAGGGGAGTGCCTTGTCCTCGCTGGG
GCGGGGCTGGGAGGACATCAAGCGGCGGGCGGCGGAAGGGTGGGGCGGCG
GGGGGGGTGGGGGTGGAGGCGGTGGAGGCGGCATGTTCGGGGGCGGATTT
TTCGACGAGCTTTTCGGCAGCGACAGCCAGGATTTCTCTCCGGTGGGGCT
GCTGACGTTGTCGTTGCTGTTCGGGGCGATGGCGAGGAGTTCTCTGCAGC
GGCGGCGGTACGGCCGCTTCGAGGCCAAGCTGGCCGCGATCGAAGCTCAA
AGGGCAAGGGCCTGGAGAGGCACCTGCCGCCGAAGGACCGCAATGCGGCG
CTGAACGCCATGAAACCGTTCCTGAGAGAGAGCAACTGGGACGCCGCTGT
CCTCTTCGCGCTGGACGAGATACACGGCCGTCTGGAGAAGAACCTGAGGA
AGGCGACGGGCGAGGACGGCGGCAGCAAGGGGAGTGCCTTGTCCTCGCTG
GGGCGGGGCTGGGAGGACATCAAGCGGCGGGCGGCGGAAGGGTGGGGCGG
CGGGGGGGGTGGGGGTGGAGGCGGTGGAGGCGGCATGTTCGGGGGCGGAT
TTTTCGACGAGCTTTTCGGCAGCGACAGCCAGGATTTCTCTCCGGTGGGG
CTGCTGACGTTGTCGTTGCTGTTCGGGGCGATGGCGAGGAGTTCTCTGCA
GCGGCGGCGGTACGGCCGCTTCGAGGCCAAGCTGGCCGCGATCGAAGCTC
AAAGGGCGATGGTTCCGCCCTCCTCCCCGAACGCCGGCGATTGGCCGAGC
GAACGAAACCCCCTGTCATCGCCGGAGCCCTGTCCGATCTGCCTGGATGT
CTTCACGCCGGCGGGGTCGGCGGACGGTGGCGGCAGCGCCAGCGCCAGCG
GTGGTTTGGTGGGCGCGGACGGCCTGCCGGCGGCCACGGCGGACTGCGGG
CACACGTTCTGCCGAAGGTAAGGCGATGGTTCCGCCCTCCTCCCCGAACG
CCGGCGATTGGCCGAGCGAACGAAACCCCCTGTCATCGCCGGAGCCCTGT
CCGATCTGCCTGGATGTCTTCACGCCGGCGGGGTCGGCGGACGGTGGCGG
CAGCGCCAGCGCCAGCGGTGGTTTGGTGGGCGCGGACGGCCTGCCGGCGG
CCACGGCGGACTGCGGGCACACGTTCTGCCGAAGGTAA
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