mRNA_H-canaliculatus_F_contig12780.2313.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12780.2313.1
Unique NamemRNA_H-canaliculatus_F_contig12780.2313.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: D7G2G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G5_ECTSI)

HSP 1 Score: 410 bits (1054), Expect = 9.490e-138
Identity = 236/362 (65.19%), Postives = 269/362 (74.31%), Query Frame = 1
Query:    1 EQQRSKVCHMMMANDAFAEAAGILEQQASLLKIQANLREEVKAAALDTARRAQVAQAEARQAALVAS--AFGGGGDPAEKEAATETAVRAVAAARIAAEHAEASAAKARAMAAAKGEQWLGAEPLAVLLGGLLECRLSD----GGVGVEGAALPGGG------------VGGSLQVAQRACRAIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASG---ERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYLADATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKV 1023
            +QQR+KVC +MM N  F  AA +LEQQA+ L  QA  RE VKAAA +TARRAQ+AQAEARQAA  A   A GGGG PA+KEA      RAV AAR A         +ARA+AAAKGEQWLGAE L+V+L  LLEC+L      GG G+   A PGGG            +  +L+VAQRACRAIM QVRVLSEEELKKES E L HLVRN+RH+M  Q++ G     +  MRE+  FH+ELVLRHLRASSLPMRLWGWEQTEDLI+ SH+HRWNAK YLAD TSPGTDKDVDYYQHKSN  N+FMPWRTGWEA SD K  ++GVNPPPTVTPVPSEGYLCPP  E++TLEWELARWIV+NK+
Sbjct:   83 DQQRAKVCTIMMDNGTFGAAADLLEQQAARLDSQARRREGVKAAAAETARRAQLAQAEARQAAQNAPSPAEGGGGGPADKEAVV---ARAVGAARAAXXXXXXXXXEARALAAAKGEQWLGAESLSVVLAALLECKLGTDAPVGGGGLPAVAQPGGGXXXXXXXXXSGSISPALRVAQRACRAIMKQVRVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEKEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAKVYLADPTSPGTDKDVDYYQHKSNNHNNFMPWRTGWEAASDTKLLVKGVNPPPTVTPVPSEGYLCPPREEYNTLEWELARWIVENKL 441          
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: A0A6H5KKZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE)

HSP 1 Score: 375 bits (964), Expect = 1.880e-114
Identity = 234/428 (54.67%), Postives = 267/428 (62.38%), Query Frame = 1
Query:    4 QQRSKVCHMMMANDAFAEAAGILEQQASLLKIQANLREEVKAAALDTARRAQVAQAEARQAALVAS--AFGGGGDPAEKEAATETAVRAVAAARIAAEHAEASAAKARAMAAAKGEQWLGAEPLAVLLGGLLECRLS-DGGVGVEGAALPGGGVGGSLQVAQRACRAIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASG---ERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYL---------------------------------------------------------------------ADATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIFGDSIHREV 1062
            +QR+KVC +MM N  F  AA +LEQQA+ L+ QA  RE VKA A +TARRAQ+AQAEARQAA  AS  A GGGG PA+KEA      RAV  AR A E AE +AA+ARA+AAAKGEQWLGAE L+V+L  LLEC+L  D  VG                           + RVLSEEELKKES E L HLVRN+RH+M  Q++ G     +  MRE+  FH+ELVLRHLRASSLPMRLWGWEQTEDLI+ SH+HRW+AK+YL                                                                     AD TSPGTDKDVDYYQHKSN  N+FMPWRTGWEA SD K  ++G+NPPPTVTPVPSEGYLCPPG E +TLEWELARWIV+NKVVEEIFGDSIHREV
Sbjct:   61 EQRTKVCMIMMDNGTFGAAADLLEQQAARLESQARRREGVKATAAETARRAQLAQAEARQAAQNASSPAEGGGGGPADKEAVV---ARAVWVARAAVEAAEVAAAEARALAAAKGEQWLGAESLSVVLAALLECKLGKDSPVGGGXXXXXXXXXXXXXXXXXXXXXXAGRRRRVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWHAKAYLVEGAGTKCCNGVYRVSPEYTANAPTKAGPTPAEEDAPKYTYQGKEPGDPLMTLFRCKMRTKAHWWFISEADPTSPGTDKDVDYYQHKSNNQNNFMPWRTGWEAASDTKLLVKGMNPPPTVTPVPSEGYLCPPGEELNTLEWELARWIVENKVVEEIFGDSIHREV 485          
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: A0A1Z5K2Z6_FISSO (Ubiquitin carboxyl-terminal hydrolase 9/24 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2Z6_FISSO)

HSP 1 Score: 116 bits (290), Expect = 1.150e-24
Identity = 77/257 (29.96%), Postives = 116/257 (45.14%), Query Frame = 1
Query:  496 IMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASGERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYL-------------------------------------------------------------------ADATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIFGDS-IHREV 1062
            I+  +   ++EELKK   +DL  +  +++H+     A+     NM   +AF  +LVLR +R+ SLP++L+GWEQ  DLI     HR   + YL                                                                   AD   PGTD+D+DYYQH++    D  P   GW A  ++     G+ PPP +    ++G L PPG E +TLE +LA+W ++N++VE++ GD+ IHREV
Sbjct:  229 IIQFISACTDEELKKIPTDDLKVIQSDLQHIFDRLVATRRSSTNM--FYAFWRDLVLRLIRSQSLPLKLFGWEQVADLIRACESHRPPPREYLVSNAGNTFANGVYTFNGEVTPDGYARQGTEFSYVLEIPSDDPNGASKKLTLFRCTMRSQQKWWFLSEADEEQPGTDRDIDYYQHRAKDYGDPYPPEQGWVACKNS-----GIEPPPILK---AQGLLVPPGAEFETLEHQLAKWAIENEIVEQVLGDTTIHREV 475          
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: A0A448ZQF1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQF1_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.830e-21
Identity = 78/269 (29.00%), Postives = 115/269 (42.75%), Query Frame = 1
Query:  469 QVAQRACRAIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASGERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYLA----------------------------------------------------------------------DATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEE-IFGDSIHREV 1062
            Q A    +A M  +   SEE LKK   EDL  LV ++  L         R+ +  E ++F   LVL+ + + SLP++L+GW+Q E L+  S  HR   +S++A                                                                      D   PGTD+D+DYYQHKS    +  P  TGW    +A     GV+P P +  +   G + PPG E +TLE +LA+W +DNK+++  + GDS+HRE+
Sbjct:  272 QAANDVSKATMRYITSCSEEALKKVPMEDLKLLVHDL--LCIFDKLIEFRRPDTYEFYSFWRGLVLKLITSQSLPLKLFGWQQMETLLEASAAHRPPPRSFVAEDAGCRFVNGEYRFKGIETDDGYGLRSGKDNEISYMREIPEDEPEGGGKTLTLFRCTMRSQQKWWFLSEADKEQPGTDRDIDYYQHKSKEHEETEPPLTGWLTCRNA-----GVDPSPKLKRI---GLMVPPGEERNTLEHQLAKWAIDNKIIDTLVLGDSVHREI 530          
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: A0A7R9VSJ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VSJ1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.050e-20
Identity = 75/265 (28.30%), Postives = 116/265 (43.77%), Query Frame = 1
Query:  475 AQRACRAIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASGERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYL---------------------------------------------------------------------ADATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIFGDSIHREV 1062
            A R  RA+M      +EE LK+++ + L   + ++ H++  + AS  R+  +   F F   +VL+ + + SLP++L+GWEQ   +I  S   R   ++++                                                                     AD   PGTDKDVDYYQHKSN   +  P  +GW     A     GV PPPT+    S G + P G E++TLE +LA+W ++N ++E + GDS+HRE+
Sbjct:  107 AIRIARAVMDTTGNATEEALKRQTHDGLNQTLTDL-HVIFNRLASSRRKE-LYSFFRFWRGMVLKLITSQSLPLKLFGWEQMNAVIYESRAMRPPPRTFIVSGGGCGFVNGRYDYAGAVTEEGYSKPGQETSYQLQIPESVSENEGGGKKLTLFRCTMRSQQKWWFLSEADEEQPGTDKDVDYYQHKSNKKEEATPPLSGWVTCRSA-----GVEPPPTLE---SSGIVVPRGEEYNTLEHQLAKWALENNLIELVLGDSVHREI 361          
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: A0A7S2XLE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XLE7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.640e-20
Identity = 69/261 (26.44%), Postives = 114/261 (43.68%), Query Frame = 1
Query:  481 RACRAIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASGERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYLA-------------------------------------------------------------------DATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIFGDSIHREV 1062
            R C+++M  +   SE+ LKK S + L+ +  +++ +      +  R+ +  + +AF   L L+ + + SLP+RL+GW+Q  +LI    + R   ++++A                                                                   D   PGTDKD+DYYQHKS    +  P   GW    ++     G+ PPPT+  +   G + P G E +TLE +LA+W +DN ++E + GDS+HREV
Sbjct:  244 RLCKSVMRFLGNTSEDALKKLSHDSLSGVRSDLQRIFDRLVPT--RRKDTHDFYAFWRSLTLKFITSQSLPLRLFGWDQVGELIGACGEMRPPPRAFMASGAGCTFVNGQYNFTGSTTVDGYARRGVEISYERIVTNPEKSGASKKLTLFRCTMRSQQKWWFLSEADEEQPGTDKDIDYYQHKSKQHEEAEPPANGWVTCRNS-----GIEPPPTLRGI---GLVVPTGEEFNTLEHQLAKWAIDNGIIELVLGDSVHREV 494          
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: B8C8H1_THAPS (USP domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8H1_THAPS)

HSP 1 Score: 97.1 bits (240), Expect = 3.440e-18
Identity = 48/110 (43.64%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  733 SLSHKHRWNAKSYLADATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIFGDSIHREV 1062
            ++  +H+W   S  AD   PGTDKD+DYYQHKS    +  P  +GW           G++PPPT+ PV   G+  P G E++TLE  LA+W ++N V+E + GDSIHRE+
Sbjct:  544 TMRSQHKWWFISE-ADLDQPGTDKDIDYYQHKSKPHEEAKPSPSGWATCRS------GIDPPPTLRPV---GFQVPEGEEYNTLEHNLAKWAIENGVIELVLGDSIHREI 643          
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: A0A7S2ES67_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ES67_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 6.930e-18
Identity = 75/266 (28.20%), Postives = 114/266 (42.86%), Query Frame = 1
Query:  475 AQRACRAIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASGERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYL---------------------------------------------------------------------ADATSPGTDKDVDYYQHKSNLSNDFM-PWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIFGDSIHREV 1062
            A R  RAIM  +   SEE+LK++S + L  +  +++ +      +  R+      + F   L L+ + + SLP++L+GW+Q  DLI  S   R   KS++                                                                     AD   PGTDKD+DYYQHK    N+   P   GW + S  KS   G +PPP +  +   G + P G E++TLE +LA+W ++NKV++ + GDS HRE+
Sbjct:   93 AIRVARAIMNHMGSASEEKLKRQSHDILNKVRYDLQRIFDRLVTT--RRAETYAFYEFWRGLALKLITSQSLPLKLFGWDQVSDLIEASEVMRPPPKSFIVSGAGTTFVNGKYNFTGLKTDDGFFRPLSEISYEMKIPNNVPGKVGGGKTLTLFRCTMRSKQKWWFLSEADEEQPGTDKDIDYYQHKPTTQNEEAEPPACGW-STSPNKS---GEDPPPNLQAI---GLVVPNGEEYNTLEHQLAKWAIENKVIKLVLGDSAHREI 349          
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: A0A7S3Q2Z7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q2Z7_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 8.310e-18
Identity = 68/257 (26.46%), Postives = 110/257 (42.80%), Query Frame = 1
Query:  493 AIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASGERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYLA-------------------------------------------------------------------DATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIFGDSIHREV 1062
            A+M  +   SE+ LKK   +D++ +   ++ +      S  R++   + +AF  +  L+ + + SLP++L+GWE   +L+ +S       K+Y+A                                                                   D   PGTDKD+DYYQ KS  + +  P  TGW     A     G++PPP +     +G + P G E +T+E +LA+W +DNKVVE + G+SIHRE+
Sbjct:  258 AVMGDLGNQSEDALKKLHHDDMSTIRWGLQAIFQLLILS--RRSETYKFYAFCRDFALKLITSQSLPLKLYGWENVNELVEISASMAPPPKTYIASGAGVTFVNGEFQYAAAIGEDGFVSSKTDYCYECIVPPASKDDKSKKLTLFKCTMRSQQKWWFISEADEHQPGTDKDIDYYQQKSKKNEETYPPSTGWMTCKSA-----GIDPPPFLE---GKGVVAPVGEEFNTMEHQLAQWAIDNKVVELVLGNSIHREI 504          
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: A0A7S1UH65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UH65_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 9.340e-17
Identity = 88/297 (29.63%), Postives = 124/297 (41.75%), Query Frame = 1
Query:  337 KGEQWLGAEPLAVLLGGLLECRLSDGGVGVEGAALPGGGVGGSLQVAQRACRAIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASGERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQ------------------------------------------------TEDLISLSHKH---RWNAKSYL---ADATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIF-GDSIHREV 1062
            +G  W+GA    VLL   L     DG   V              Q + R     + Q   L  E L+K+S E ++ L++NM+ +M +  A        ++ F F   L LR+L   SLP+RL+GWEQ                                                TED I L+      R +AK +    AD   PGTDKD+DYYQHKS  + +  P  + W + + A    RG +PPP +  +  +      G+E+D  E  L RWI++N VV  +F   S HREV
Sbjct:  185 RGAPWIGARQACVLLRAAL-----DGKEAVN------------QQTSARLADTFVEQAGELDGEALRKDSTEAMSQLLQNMQDVMESSGAG-------KDYFEFWLGLTLRYLEVDSLPLRLFGWEQVVALMEHAEDSRPVPRRIETYGAGAEDVNGVFTLRPNCSRTNPAYTRTTEDGILLTLFRCTMRSSAKWWYISEADPKDPGTDKDIDYYQHKSKQNEEREPPHSRWLSCTSANQ--RGRDPPPQLRVLELD---VTEGKENDLPEPRLVRWILENDVVGAVFRASSAHREV 452          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2G5_ECTSI9.490e-13865.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKZ1_9PHAE1.880e-11454.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A1Z5K2Z6_FISSO1.150e-2429.96Ubiquitin carboxyl-terminal hydrolase 9/24 n=2 Tax... [more]
A0A448ZQF1_9STRA1.830e-2129.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7R9VSJ1_9STRA2.050e-2028.30Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2XLE7_9STRA2.640e-2026.44Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
B8C8H1_THAPS3.440e-1843.64USP domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S2ES67_9STRA6.930e-1828.20Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S3Q2Z7_9STRA8.310e-1826.46Hypothetical protein (Fragment) n=2 Tax=Chaetocero... [more]
A0A7S1UH65_9STRA9.340e-1729.63Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12780contigH-canaliculatus_F_contig12780:304..1569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue4.6e-18
Seed eggNOG ortholog35128.Thaps24035
KEGG koko:K11840,ko:K11853,ko:K11869
EggNOG free text desc.Belongs to the peptidase C19 family
EggNOG OGs2XARP@2836,COG5077@1,KOG1866@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_005890.1
EC3.4.19.12
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size1062
Cds size1035
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12780.2313.1prot_H-canaliculatus_F_contig12780.2313.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12780 304..1542 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928999.5929103-CDS-H-canaliculatus_F_contig12780:303..5911622928999.5929103-CDS-H-canaliculatus_F_contig12780:303..591Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12780 304..591 -
1696845644.6879995-CDS-H-canaliculatus_F_contig12780:303..5911696845644.6879995-CDS-H-canaliculatus_F_contig12780:303..591Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12780 304..591 -
1622928999.61272-CDS-H-canaliculatus_F_contig12780:795..15421622928999.61272-CDS-H-canaliculatus_F_contig12780:795..1542Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12780 796..1542 -
1696845644.7021093-CDS-H-canaliculatus_F_contig12780:795..15421696845644.7021093-CDS-H-canaliculatus_F_contig12780:795..1542Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12780 796..1542 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928999.649329-UTR-H-canaliculatus_F_contig12780:1542..15691622928999.649329-UTR-H-canaliculatus_F_contig12780:1542..1569Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12780 1543..1569 -
1696845644.7121093-UTR-H-canaliculatus_F_contig12780:1542..15691696845644.7121093-UTR-H-canaliculatus_F_contig12780:1542..1569Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12780 1543..1569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12780.2313.1

>prot_H-canaliculatus_F_contig12780.2313.1 ID=prot_H-canaliculatus_F_contig12780.2313.1|Name=mRNA_H-canaliculatus_F_contig12780.2313.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=345bp
MMMANDAFAEAAGILEQQASLLKIQANLREEVKAAALDTARRAQVAQAEA
RQAALVASAFGGGGDPAEKEAATETAVRAVAAARIAAEHAEASAAKARAM
AAAKGEQWLGAEPLAVLLGGLLECRLSDGGVGVEGAALPGGGVGGSLQVA
QRACRAIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASGERQNN
MRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYLA
DATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTV
TPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIFGDSIHREV
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mRNA from alignment at H-canaliculatus_F_contig12780:304..1569-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12780.2313.1 ID=mRNA_H-canaliculatus_F_contig12780.2313.1|Name=mRNA_H-canaliculatus_F_contig12780.2313.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1266bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12780:304..1569- (Hapterophycus canaliculatus Oshoro5f female)
GAACAGCAACGCTCGAAGGTTTGTCACATGATGATGGCCAACGACGCCTT CGCCGAGGCGGCGGGCATCCTAGAGCAGCAGGCAAGCCTGCTGAAGATCC AGGCGAATTTGCGGGAGGAGGTGAAGGCGGCCGCGCTTGATACCGCACGG CGGGCGCAGGTCGCCCAAGCAGAGGCCAGGCAGGCCGCTCTCGTGGCCTC CGCCTTCGGCGGCGGCGGAGATCCGGCCGAGAAGGAGGCCGCCACCGAGA CCGCGGTGCGAGCGGTGGCGGCGGCGAGGATCGCGGCCGAGCACGCCGAG GCCAGCGCCGCGAAAGCCCGCGCAATGGCGGCGGCGAAGGGGGAGCAGTG GCTCGGGGCGGAGCCGCTCGCGGTGCTGCTGGGCGGATTGCTGGAGTGCC GGCTGTCGGACGGCGGCGTCGGCGTCGAAGGAGCGGCTCTCCCCGGCGGG GGAGTGGGGGGCTCCCTCCAGGTGGCGCAGCGGGCTTGCCGGGCGATCAT GATGCAGGTGCGCGTGCTGAGCGAGGAGGAGCTGAAGAAGGAGAGCCCCG AAGACCTCGCACACCTGGTCCGGAACATGCGCCACCTCATGACGGCGCAG TCGGCGTCGGGCGAGCGGCAAAACAACATGCGGGAGAGCTTCGCCTTTCA CGCAGAGCTCGTCCTGCGGCACCTGAGGGCCTCGTCGCTGCCCATGCGCC TGTGGGGGTGGGAGCAGACGGAGGATCTCATCAGCCTGAGCCACAAGCAC CGCTGGAACGCCAAGTCGTACCTGGTAGAGGGCGCCGGCACCCTGTGCTG CAACGGCGTCTACCGCGTGTCTCCCGAAGTCGCGCGGAACGTTCCAGCGG TGGCAGATCCCGCGGCCCCTGGCGAGGACGATGCCCCGAAGTACACGTAC CAGAGCAAGGGGGGCCCGCTGATGACACTCTTCCGCTGCAAGATGCGCAC CAAAGCCTTCTGGTGGTTCATCAGCGAGGCGGACGCGACCTCCCCGGGGA CGGACAAGGACGTGGACTACTACCAGCACAAGTCCAACCTCTCCAACGAC TTCATGCCGTGGCGCACGGGGTGGGAGGCGGTCTCCGACGCCAAGTCTCC CTTAAGGGGCGTTAACCCGCCCCCAACGGTGACGCCGGTGCCGAGCGAGG GCTACCTGTGCCCGCCCGGGCGTGAGCACGACACCCTGGAGTGGGAGCTC GCCCGTTGGATCGTCGACAACAAGGTGGTGGAGGAGATCTTCGGAGACAG CATCCACCGGGAGGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12780:304..1569-

>mRNA_H-canaliculatus_F_contig12780.2313.1 ID=mRNA_H-canaliculatus_F_contig12780.2313.1|Name=mRNA_H-canaliculatus_F_contig12780.2313.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2070bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12780:304..1569- (Hapterophycus canaliculatus Oshoro5f female)
ATGATGATGGCCAACGACGCCTTCGCCGAGGCGGCGGGCATCCTAGAGCA
GCAGGCAAGCCTGCTGAAGATCCAGGCGAATTTGCGGGAGGAGGTGAAGG
CGGCCGCGCTTGATACCGCACGGCGGGCGCAGGTCGCCCAAGCAGAGGCC
AGGCAGGCCGCTCTCGTGGCCTCCGCCTTCGGCGGCGGCGGAGATCCGGC
CGAGAAGGAGGCCGCCACCGAGACCGCGGTGCGAGCGGTGGCGGCGGCGA
GGATCGCGGCCGAGCACGCCGAGGCCAGCGCCGCGAAAGCCCGCGCAATG
GCGGCGGCGAAGGGGGAGCAGTGGCTCGGGGCGGAGCCGCTCGCGGTGCT
GCTGGGCGGATTGCTGGAGTGCCGGCTGTCGGACGGCGGCGTCGGCGTCG
AAGGAGCGGCTCTCCCCGGCGGGGGAGTGGGGGGCTCCCTCCAGGTGGCG
CAGCGGGCTTGCCGGGCGATCATGATGCAGGTGCGCGTGCTGAGCGAGGA
GGAGCTGAAGAAGGAGAGCCCCGAAGACCTCGCACACCTGGTCCGGAACA
TGCGCCACCTCATGACGGCGCAGTCGGCGTCGGGCGAGCGGCAAAACAAC
ATGCGGGAGAGCTTCGCCTTTCACGCAGAGCTCGTCCTGCGGCACCTGAG
GGCCTCGTCGCTGCCCATGCGCCTGTGGGGGTGGGAGCAGACGGAGGATC
TCATCAGCCTGAGCCACAAGCACCGCTGGAACGCCAAGTCGTACCTGATG
ATGATGGCCAACGACGCCTTCGCCGAGGCGGCGGGCATCCTAGAGCAGCA
GGCAAGCCTGCTGAAGATCCAGGCGAATTTGCGGGAGGAGGTGAAGGCGG
CCGCGCTTGATACCGCACGGCGGGCGCAGGTCGCCCAAGCAGAGGCCAGG
CAGGCCGCTCTCGTGGCCTCCGCCTTCGGCGGCGGCGGAGATCCGGCCGA
GAAGGAGGCCGCCACCGAGACCGCGGTGCGAGCGGTGGCGGCGGCGAGGA
TCGCGGCCGAGCACGCCGAGGCCAGCGCCGCGAAAGCCCGCGCAATGGCG
GCGGCGAAGGGGGAGCAGTGGCTCGGGGCGGAGCCGCTCGCGGTGCTGCT
GGGCGGATTGCTGGAGTGCCGGCTGTCGGACGGCGGCGTCGGCGTCGAAG
GAGCGGCTCTCCCCGGCGGGGGAGTGGGGGGCTCCCTCCAGGTGGCGCAG
CGGGCTTGCCGGGCGATCATGATGCAGGTGCGCGTGCTGAGCGAGGAGGA
GCTGAAGAAGGAGAGCCCCGAAGACCTCGCACACCTGGTCCGGAACATGC
GCCACCTCATGACGGCGCAGTCGGCGTCGGGCGAGCGGCAAAACAACATG
CGGGAGAGCTTCGCCTTTCACGCAGAGCTCGTCCTGCGGCACCTGAGGGC
CTCGTCGCTGCCCATGCGCCTGTGGGGGTGGGAGCAGACGGAGGATCTCA
TCAGCCTGAGCCACAAGCACCGCTGGAACGCCAAGTCGTACCTGGCGGAC
GCGACCTCCCCGGGGACGGACAAGGACGTGGACTACTACCAGCACAAGTC
CAACCTCTCCAACGACTTCATGCCGTGGCGCACGGGGTGGGAGGCGGTCT
CCGACGCCAAGTCTCCCTTAAGGGGCGTTAACCCGCCCCCAACGGTGACG
CCGGTGCCGAGCGAGGGCTACCTGTGCCCGCCCGGGCGTGAGCACGACAC
CCTGGAGTGGGAGCTCGCCCGTTGGATCGTCGACAACAAGGTGGTGGAGG
AGATCTTCGGAGACAGCATCCACCGGGAGGTCGCGGACGCGACCTCCCCG
GGGACGGACAAGGACGTGGACTACTACCAGCACAAGTCCAACCTCTCCAA
CGACTTCATGCCGTGGCGCACGGGGTGGGAGGCGGTCTCCGACGCCAAGT
CTCCCTTAAGGGGCGTTAACCCGCCCCCAACGGTGACGCCGGTGCCGAGC
GAGGGCTACCTGTGCCCGCCCGGGCGTGAGCACGACACCCTGGAGTGGGA
GCTCGCCCGTTGGATCGTCGACAACAAGGTGGTGGAGGAGATCTTCGGAG
ACAGCATCCACCGGGAGGTC
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