mRNA_H-canaliculatus_F_contig12780.2313.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: D7G2G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G5_ECTSI) HSP 1 Score: 410 bits (1054), Expect = 9.490e-138 Identity = 236/362 (65.19%), Postives = 269/362 (74.31%), Query Frame = 1
Query: 1 EQQRSKVCHMMMANDAFAEAAGILEQQASLLKIQANLREEVKAAALDTARRAQVAQAEARQAALVAS--AFGGGGDPAEKEAATETAVRAVAAARIAAEHAEASAAKARAMAAAKGEQWLGAEPLAVLLGGLLECRLSD----GGVGVEGAALPGGG------------VGGSLQVAQRACRAIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASG---ERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYLADATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKV 1023
+QQR+KVC +MM N F AA +LEQQA+ L QA RE VKAAA +TARRAQ+AQAEARQAA A A GGGG PA+KEA RAV AAR A +ARA+AAAKGEQWLGAE L+V+L LLEC+L GG G+ A PGGG + +L+VAQRACRAIM QVRVLSEEELKKES E L HLVRN+RH+M Q++ G + MRE+ FH+ELVLRHLRASSLPMRLWGWEQTEDLI+ SH+HRWNAK YLAD TSPGTDKDVDYYQHKSN N+FMPWRTGWEA SD K ++GVNPPPTVTPVPSEGYLCPP E++TLEWELARWIV+NK+
Sbjct: 83 DQQRAKVCTIMMDNGTFGAAADLLEQQAARLDSQARRREGVKAAAAETARRAQLAQAEARQAAQNAPSPAEGGGGGPADKEAVV---ARAVGAARAAXXXXXXXXXEARALAAAKGEQWLGAESLSVVLAALLECKLGTDAPVGGGGLPAVAQPGGGXXXXXXXXXSGSISPALRVAQRACRAIMKQVRVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEKEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAKVYLADPTSPGTDKDVDYYQHKSNNHNNFMPWRTGWEAASDTKLLVKGVNPPPTVTPVPSEGYLCPPREEYNTLEWELARWIVENKL 441
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: A0A6H5KKZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE) HSP 1 Score: 375 bits (964), Expect = 1.880e-114 Identity = 234/428 (54.67%), Postives = 267/428 (62.38%), Query Frame = 1
Query: 4 QQRSKVCHMMMANDAFAEAAGILEQQASLLKIQANLREEVKAAALDTARRAQVAQAEARQAALVAS--AFGGGGDPAEKEAATETAVRAVAAARIAAEHAEASAAKARAMAAAKGEQWLGAEPLAVLLGGLLECRLS-DGGVGVEGAALPGGGVGGSLQVAQRACRAIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASG---ERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYL---------------------------------------------------------------------ADATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIFGDSIHREV 1062
+QR+KVC +MM N F AA +LEQQA+ L+ QA RE VKA A +TARRAQ+AQAEARQAA AS A GGGG PA+KEA RAV AR A E AE +AA+ARA+AAAKGEQWLGAE L+V+L LLEC+L D VG + RVLSEEELKKES E L HLVRN+RH+M Q++ G + MRE+ FH+ELVLRHLRASSLPMRLWGWEQTEDLI+ SH+HRW+AK+YL AD TSPGTDKDVDYYQHKSN N+FMPWRTGWEA SD K ++G+NPPPTVTPVPSEGYLCPPG E +TLEWELARWIV+NKVVEEIFGDSIHREV
Sbjct: 61 EQRTKVCMIMMDNGTFGAAADLLEQQAARLESQARRREGVKATAAETARRAQLAQAEARQAAQNASSPAEGGGGGPADKEAVV---ARAVWVARAAVEAAEVAAAEARALAAAKGEQWLGAESLSVVLAALLECKLGKDSPVGGGXXXXXXXXXXXXXXXXXXXXXXAGRRRRVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWHAKAYLVEGAGTKCCNGVYRVSPEYTANAPTKAGPTPAEEDAPKYTYQGKEPGDPLMTLFRCKMRTKAHWWFISEADPTSPGTDKDVDYYQHKSNNQNNFMPWRTGWEAASDTKLLVKGMNPPPTVTPVPSEGYLCPPGEELNTLEWELARWIVENKVVEEIFGDSIHREV 485
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: A0A1Z5K2Z6_FISSO (Ubiquitin carboxyl-terminal hydrolase 9/24 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2Z6_FISSO) HSP 1 Score: 116 bits (290), Expect = 1.150e-24 Identity = 77/257 (29.96%), Postives = 116/257 (45.14%), Query Frame = 1
Query: 496 IMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASGERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYL-------------------------------------------------------------------ADATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIFGDS-IHREV 1062
I+ + ++EELKK +DL + +++H+ A+ NM +AF +LVLR +R+ SLP++L+GWEQ DLI HR + YL AD PGTD+D+DYYQH++ D P GW A ++ G+ PPP + ++G L PPG E +TLE +LA+W ++N++VE++ GD+ IHREV
Sbjct: 229 IIQFISACTDEELKKIPTDDLKVIQSDLQHIFDRLVATRRSSTNM--FYAFWRDLVLRLIRSQSLPLKLFGWEQVADLIRACESHRPPPREYLVSNAGNTFANGVYTFNGEVTPDGYARQGTEFSYVLEIPSDDPNGASKKLTLFRCTMRSQQKWWFLSEADEEQPGTDRDIDYYQHRAKDYGDPYPPEQGWVACKNS-----GIEPPPILK---AQGLLVPPGAEFETLEHQLAKWAIENEIVEQVLGDTTIHREV 475
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: A0A448ZQF1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQF1_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.830e-21 Identity = 78/269 (29.00%), Postives = 115/269 (42.75%), Query Frame = 1
Query: 469 QVAQRACRAIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASGERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYLA----------------------------------------------------------------------DATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEE-IFGDSIHREV 1062
Q A +A M + SEE LKK EDL LV ++ L R+ + E ++F LVL+ + + SLP++L+GW+Q E L+ S HR +S++A D PGTD+D+DYYQHKS + P TGW +A GV+P P + + G + PPG E +TLE +LA+W +DNK+++ + GDS+HRE+
Sbjct: 272 QAANDVSKATMRYITSCSEEALKKVPMEDLKLLVHDL--LCIFDKLIEFRRPDTYEFYSFWRGLVLKLITSQSLPLKLFGWQQMETLLEASAAHRPPPRSFVAEDAGCRFVNGEYRFKGIETDDGYGLRSGKDNEISYMREIPEDEPEGGGKTLTLFRCTMRSQQKWWFLSEADKEQPGTDRDIDYYQHKSKEHEETEPPLTGWLTCRNA-----GVDPSPKLKRI---GLMVPPGEERNTLEHQLAKWAIDNKIIDTLVLGDSVHREI 530
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: A0A7R9VSJ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VSJ1_9STRA) HSP 1 Score: 103 bits (256), Expect = 2.050e-20 Identity = 75/265 (28.30%), Postives = 116/265 (43.77%), Query Frame = 1
Query: 475 AQRACRAIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASGERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYL---------------------------------------------------------------------ADATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIFGDSIHREV 1062
A R RA+M +EE LK+++ + L + ++ H++ + AS R+ + F F +VL+ + + SLP++L+GWEQ +I S R ++++ AD PGTDKDVDYYQHKSN + P +GW A GV PPPT+ S G + P G E++TLE +LA+W ++N ++E + GDS+HRE+
Sbjct: 107 AIRIARAVMDTTGNATEEALKRQTHDGLNQTLTDL-HVIFNRLASSRRKE-LYSFFRFWRGMVLKLITSQSLPLKLFGWEQMNAVIYESRAMRPPPRTFIVSGGGCGFVNGRYDYAGAVTEEGYSKPGQETSYQLQIPESVSENEGGGKKLTLFRCTMRSQQKWWFLSEADEEQPGTDKDVDYYQHKSNKKEEATPPLSGWVTCRSA-----GVEPPPTLE---SSGIVVPRGEEYNTLEHQLAKWALENNLIELVLGDSVHREI 361
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: A0A7S2XLE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XLE7_9STRA) HSP 1 Score: 103 bits (256), Expect = 2.640e-20 Identity = 69/261 (26.44%), Postives = 114/261 (43.68%), Query Frame = 1
Query: 481 RACRAIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASGERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYLA-------------------------------------------------------------------DATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIFGDSIHREV 1062
R C+++M + SE+ LKK S + L+ + +++ + + R+ + + +AF L L+ + + SLP+RL+GW+Q +LI + R ++++A D PGTDKD+DYYQHKS + P GW ++ G+ PPPT+ + G + P G E +TLE +LA+W +DN ++E + GDS+HREV
Sbjct: 244 RLCKSVMRFLGNTSEDALKKLSHDSLSGVRSDLQRIFDRLVPT--RRKDTHDFYAFWRSLTLKFITSQSLPLRLFGWDQVGELIGACGEMRPPPRAFMASGAGCTFVNGQYNFTGSTTVDGYARRGVEISYERIVTNPEKSGASKKLTLFRCTMRSQQKWWFLSEADEEQPGTDKDIDYYQHKSKQHEEAEPPANGWVTCRNS-----GIEPPPTLRGI---GLVVPTGEEFNTLEHQLAKWAIDNGIIELVLGDSVHREV 494
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: B8C8H1_THAPS (USP domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8H1_THAPS) HSP 1 Score: 97.1 bits (240), Expect = 3.440e-18 Identity = 48/110 (43.64%), Postives = 67/110 (60.91%), Query Frame = 1
Query: 733 SLSHKHRWNAKSYLADATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIFGDSIHREV 1062
++ +H+W S AD PGTDKD+DYYQHKS + P +GW G++PPPT+ PV G+ P G E++TLE LA+W ++N V+E + GDSIHRE+
Sbjct: 544 TMRSQHKWWFISE-ADLDQPGTDKDIDYYQHKSKPHEEAKPSPSGWATCRS------GIDPPPTLRPV---GFQVPEGEEYNTLEHNLAKWAIENGVIELVLGDSIHREI 643
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: A0A7S2ES67_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ES67_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 6.930e-18 Identity = 75/266 (28.20%), Postives = 114/266 (42.86%), Query Frame = 1
Query: 475 AQRACRAIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASGERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYL---------------------------------------------------------------------ADATSPGTDKDVDYYQHKSNLSNDFM-PWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIFGDSIHREV 1062
A R RAIM + SEE+LK++S + L + +++ + + R+ + F L L+ + + SLP++L+GW+Q DLI S R KS++ AD PGTDKD+DYYQHK N+ P GW + S KS G +PPP + + G + P G E++TLE +LA+W ++NKV++ + GDS HRE+
Sbjct: 93 AIRVARAIMNHMGSASEEKLKRQSHDILNKVRYDLQRIFDRLVTT--RRAETYAFYEFWRGLALKLITSQSLPLKLFGWDQVSDLIEASEVMRPPPKSFIVSGAGTTFVNGKYNFTGLKTDDGFFRPLSEISYEMKIPNNVPGKVGGGKTLTLFRCTMRSKQKWWFLSEADEEQPGTDKDIDYYQHKPTTQNEEAEPPACGW-STSPNKS---GEDPPPNLQAI---GLVVPNGEEYNTLEHQLAKWAIENKVIKLVLGDSAHREI 349
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: A0A7S3Q2Z7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q2Z7_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 8.310e-18 Identity = 68/257 (26.46%), Postives = 110/257 (42.80%), Query Frame = 1
Query: 493 AIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASGERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQTEDLISLSHKHRWNAKSYLA-------------------------------------------------------------------DATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIFGDSIHREV 1062
A+M + SE+ LKK +D++ + ++ + S R++ + +AF + L+ + + SLP++L+GWE +L+ +S K+Y+A D PGTDKD+DYYQ KS + + P TGW A G++PPP + +G + P G E +T+E +LA+W +DNKVVE + G+SIHRE+
Sbjct: 258 AVMGDLGNQSEDALKKLHHDDMSTIRWGLQAIFQLLILS--RRSETYKFYAFCRDFALKLITSQSLPLKLYGWENVNELVEISASMAPPPKTYIASGAGVTFVNGEFQYAAAIGEDGFVSSKTDYCYECIVPPASKDDKSKKLTLFKCTMRSQQKWWFISEADEHQPGTDKDIDYYQQKSKKNEETYPPSTGWMTCKSA-----GIDPPPFLE---GKGVVAPVGEEFNTMEHQLAQWAIDNKVVELVLGNSIHREI 504
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Match: A0A7S1UH65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UH65_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 9.340e-17 Identity = 88/297 (29.63%), Postives = 124/297 (41.75%), Query Frame = 1
Query: 337 KGEQWLGAEPLAVLLGGLLECRLSDGGVGVEGAALPGGGVGGSLQVAQRACRAIMMQVRVLSEEELKKESPEDLAHLVRNMRHLMTAQSASGERQNNMRESFAFHAELVLRHLRASSLPMRLWGWEQ------------------------------------------------TEDLISLSHKH---RWNAKSYL---ADATSPGTDKDVDYYQHKSNLSNDFMPWRTGWEAVSDAKSPLRGVNPPPTVTPVPSEGYLCPPGREHDTLEWELARWIVDNKVVEEIF-GDSIHREV 1062
+G W+GA VLL L DG V Q + R + Q L E L+K+S E ++ L++NM+ +M + A ++ F F L LR+L SLP+RL+GWEQ TED I L+ R +AK + AD PGTDKD+DYYQHKS + + P + W + + A RG +PPP + + + G+E+D E L RWI++N VV +F S HREV
Sbjct: 185 RGAPWIGARQACVLLRAAL-----DGKEAVN------------QQTSARLADTFVEQAGELDGEALRKDSTEAMSQLLQNMQDVMESSGAG-------KDYFEFWLGLTLRYLEVDSLPLRLFGWEQVVALMEHAEDSRPVPRRIETYGAGAEDVNGVFTLRPNCSRTNPAYTRTTEDGILLTLFRCTMRSSAKWWYISEADPKDPGTDKDIDYYQHKSKQNEEREPPHSRWLSCTSANQ--RGRDPPPQLRVLELD---VTEGKENDLPEPRLVRWILENDVVGAVFRASSAHREV 452 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12780.2313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12780.2313.1 >prot_H-canaliculatus_F_contig12780.2313.1 ID=prot_H-canaliculatus_F_contig12780.2313.1|Name=mRNA_H-canaliculatus_F_contig12780.2313.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=345bp MMMANDAFAEAAGILEQQASLLKIQANLREEVKAAALDTARRAQVAQAEAback to top mRNA from alignment at H-canaliculatus_F_contig12780:304..1569- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12780.2313.1 ID=mRNA_H-canaliculatus_F_contig12780.2313.1|Name=mRNA_H-canaliculatus_F_contig12780.2313.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1266bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12780:304..1569- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12780:304..1569- >mRNA_H-canaliculatus_F_contig12780.2313.1 ID=mRNA_H-canaliculatus_F_contig12780.2313.1|Name=mRNA_H-canaliculatus_F_contig12780.2313.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2070bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12780:304..1569- (Hapterophycus canaliculatus Oshoro5f female)back to top |