mRNA_H-canaliculatus_F_contig12766.2302.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12766.2302.1
Unique NamemRNA_H-canaliculatus_F_contig12766.2302.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12766.2302.1 vs. uniprot
Match: A0A6H5KVR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR6_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 9.120e-28
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 SEVSKVLAGSEERGLREGDIRAIMSMMGPSDLSEVEDEVKVIQQNVRAWILKCNYKSLRKAAKTLQ 198
            S +SK LAG EERGLRE D+RAIMSMMGPSDLSEVEDEVKVIQQN RAWIL+CNYKSLRKAAKTLQ
Sbjct: 1500 SRISKELAGVEERGLREEDLRAIMSMMGPSDLSEVEDEVKVIQQNFRAWILRCNYKSLRKAAKTLQ 1565
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BLAST of mRNA_H-canaliculatus_F_contig12766.2302.1 vs. uniprot
Match: D7FNU1_ECTSI (CG-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU1_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 3.160e-27
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 SEVSKVLAGSEERGLREGDIRAIMSMMGPSDLSEVEDEVKVIQQNVRAWILKCNYKSLRKAAKTLQ 198
            S +SK LAG EERGLRE D+RAIMSMMGPSDLSEVEDEVKVIQQN RAWIL+CNYKSLRKAAKTLQ
Sbjct: 1423 SGMSKELAGVEERGLREEDLRAIMSMMGPSDLSEVEDEVKVIQQNFRAWILRCNYKSLRKAAKTLQ 1488
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BLAST of mRNA_H-canaliculatus_F_contig12766.2302.1 vs. uniprot
Match: A0A835YS93_9STRA (CG-1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS93_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.380e-9
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   52 GDIRAIMSMMGPSDLSEVEDEVKVIQQNVRAWILKCNYKSLRKAAKTLQ 198
            G + A MSMMGP +L E+E + + IQQN+RAW L+ NY+S+R AA+TLQ
Sbjct: 1009 GRLDAAMSMMGPEELEELEGQARKIQQNLRAWALRRNYRSMRAAARTLQ 1057
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BLAST of mRNA_H-canaliculatus_F_contig12766.2302.1 vs. uniprot
Match: A0A2P4YI52_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YI52_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.730e-8
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 SEVSKVLAGSEERGLREGDIRAIMSMMGPSDLSEVEDEVKVIQQNVRAWILKCNYKSLRKAAKTLQ 198
            S+V  V+A  EE GL +  ++A M +MGP +   +EDEVKV+Q  +RAW+LK N K++R+  K L+
Sbjct:   19 SDVQSVIAEDEE-GLNK--LQAAMELMGPEERQSLEDEVKVLQHGIRAWLLKRNCKNMRETTKQLR 81
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BLAST of mRNA_H-canaliculatus_F_contig12766.2302.1 vs. uniprot
Match: K3WG96_GLOUD (CG-1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG96_GLOUD)

HSP 1 Score: 56.6 bits (135), Expect = 9.950e-8
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    1 SEVSKVLAGSEERGLREGDIRAIMSMMGPSDLSEVEDEVKVIQQNVRAWILKCNYKSLRKAAKTL 195
            S+V  V+A  EE   +   + A M +MGP +   +EDEVKV+Q N+RAW+L+ N K++R+  K L
Sbjct:  709 SDVKSVIADDEENLTK---LEAAMELMGPEERQSLEDEVKVLQHNIRAWLLRRNCKNMRETTKRL 770
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BLAST of mRNA_H-canaliculatus_F_contig12766.2302.1 vs. uniprot
Match: G4ZNF2_PHYSP (CG-1 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZNF2_PHYSP)

HSP 1 Score: 56.6 bits (135), Expect = 9.960e-8
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 SEVSKVLAGSEERGLREGDIRAIMSMMGPSDLSEVEDEVKVIQQNVRAWILKCNYKSLRKAAKTLQ 198
            S+V  V+A  EE GL +  ++A M +MGP +   +EDEVKV+Q  +RAW+LK N K++R+  K L+
Sbjct:  804 SDVQSVIAEDEE-GLNK--LQAAMELMGPEERQSLEDEVKVLQHGIRAWLLKRNCKNMRETTKQLR 866
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BLAST of mRNA_H-canaliculatus_F_contig12766.2302.1 vs. uniprot
Match: A0A6A3KU05_9STRA (CG-1 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KU05_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 9.970e-8
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 SEVSKVLAGSEERGLREGDIRAIMSMMGPSDLSEVEDEVKVIQQNVRAWILKCNYKSLRKAAKTLQ 198
            S+V  V+A  EE GL +  ++A M +MGP +   +EDEVKV+Q  +RAW+LK N K++R+  K L+
Sbjct:  847 SDVQSVIAEDEE-GLNK--LQAAMELMGPEERQSLEDEVKVLQHGIRAWLLKRNCKNMRETTKQLR 909
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BLAST of mRNA_H-canaliculatus_F_contig12766.2302.1 vs. uniprot
Match: A0A329SPC1_9STRA (CG-1 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SPC1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 9.970e-8
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 SEVSKVLAGSEERGLREGDIRAIMSMMGPSDLSEVEDEVKVIQQNVRAWILKCNYKSLRKAAKTLQ 198
            S+V  V+A  EE GL +  ++A M +MGP +   +EDEVKV+Q  +RAW+LK N K++R+  K L+
Sbjct:  850 SDVQSVIAEDEE-GLNK--LQAAMELMGPEERQSLEDEVKVLQHGIRAWLLKRNCKNMRETTKQLR 912
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BLAST of mRNA_H-canaliculatus_F_contig12766.2302.1 vs. uniprot
Match: W2QAW0_PHYPN (CG-1 domain-containing protein n=15 Tax=Phytophthora TaxID=4783 RepID=W2QAW0_PHYPN)

HSP 1 Score: 56.6 bits (135), Expect = 9.980e-8
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 SEVSKVLAGSEERGLREGDIRAIMSMMGPSDLSEVEDEVKVIQQNVRAWILKCNYKSLRKAAKTLQ 198
            S+V  V+A  EE GL +  ++A M +MGP +   +EDEVKV+Q  +RAW+LK N K++R+  K L+
Sbjct:  886 SDVQSVIAEDEE-GLNK--LQAAMELMGPEERQSLEDEVKVLQHGIRAWLLKRNCKNMRETTKQLR 948
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12766.2302.1 vs. uniprot
Match: A0A5D6XUZ6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUZ6_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.010e-7
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    1 SEVSKVLAGSEERGLREGDIRAIMSMMGPSDLSEVEDEVKVIQQNVRAWILKCNYKSLRKAAKTL 195
            S+V  V+A  E    +   + A M +MGP +   +EDEVK++Q N+RAW+LK N KS+R+A K L
Sbjct: 2618 SDVKSVIADDEASLTK---LEAAMELMGPEERQSLEDEVKLLQHNIRAWLLKRNCKSMREATKRL 2679
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12766.2302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVR6_9PHAE9.120e-2887.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNU1_ECTSI3.160e-2787.88CG-1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YS93_9STRA4.380e-957.14CG-1 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A2P4YI52_9STRA4.730e-845.45Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
K3WG96_GLOUD9.950e-843.08CG-1 domain-containing protein n=1 Tax=Globisporan... [more]
G4ZNF2_PHYSP9.960e-845.45CG-1 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A6A3KU05_9STRA9.970e-845.45CG-1 domain-containing protein n=4 Tax=Phytophthor... [more]
A0A329SPC1_9STRA9.970e-845.45CG-1 domain-containing protein n=1 Tax=Phytophthor... [more]
W2QAW0_PHYPN9.980e-845.45CG-1 domain-containing protein n=15 Tax=Phytophtho... [more]
A0A5D6XUZ6_9STRA1.010e-744.62Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12766contigH-canaliculatus_F_contig12766:3112..3309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1e-22
Seed eggNOG ortholog2880.D7FNU1
KEGG koko:K17458
EggNOG free text desc.positive regulation of myosin-light-chain-phosphatase activity
EggNOG OGsCOG0666@1,KOG0505@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.9037654-CDS-H-canaliculatus_F_contig12766:3111..33091622928997.9037654-CDS-H-canaliculatus_F_contig12766:3111..3309Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12766 3112..3309 -
1696845643.9339602-CDS-H-canaliculatus_F_contig12766:3111..33091696845643.9339602-CDS-H-canaliculatus_F_contig12766:3111..3309Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12766 3112..3309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12766.2302.1prot_H-canaliculatus_F_contig12766.2302.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12766 3112..3309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12766.2302.1

>prot_H-canaliculatus_F_contig12766.2302.1 ID=prot_H-canaliculatus_F_contig12766.2302.1|Name=mRNA_H-canaliculatus_F_contig12766.2302.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=66bp
SEVSKVLAGSEERGLREGDIRAIMSMMGPSDLSEVEDEVKVIQQNVRAWI
LKCNYKSLRKAAKTLQ
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mRNA from alignment at H-canaliculatus_F_contig12766:3112..3309-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12766.2302.1 ID=mRNA_H-canaliculatus_F_contig12766.2302.1|Name=mRNA_H-canaliculatus_F_contig12766.2302.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=198bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12766:3112..3309- (Hapterophycus canaliculatus Oshoro5f female)
TCCGAGGTGTCGAAGGTGCTCGCGGGTAGCGAGGAGCGCGGCTTGCGCGA
AGGGGACATCCGCGCGATCATGTCCATGATGGGGCCGTCGGACCTGAGCG
AGGTAGAAGACGAGGTGAAGGTCATCCAGCAGAACGTCAGGGCGTGGATC
CTGAAGTGCAACTATAAGAGCCTCAGGAAGGCGGCCAAGACCCTTCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12766:3112..3309-

>mRNA_H-canaliculatus_F_contig12766.2302.1 ID=mRNA_H-canaliculatus_F_contig12766.2302.1|Name=mRNA_H-canaliculatus_F_contig12766.2302.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=396bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12766:3112..3309- (Hapterophycus canaliculatus Oshoro5f female)
TCCGAGGTGTCGAAGGTGCTCGCGGGTAGCGAGGAGCGCGGCTTGCGCGA
AGGGGACATCCGCGCGATCATGTCCATGATGGGGCCGTCGGACCTGAGCG
AGGTAGAAGACGAGGTGAAGGTCATCCAGCAGAACGTCAGGGCGTGGATC
CTGAAGTGCAACTATAAGAGCCTCAGGAAGGCGGCCAAGACCCTTCAGTC
CGAGGTGTCGAAGGTGCTCGCGGGTAGCGAGGAGCGCGGCTTGCGCGAAG
GGGACATCCGCGCGATCATGTCCATGATGGGGCCGTCGGACCTGAGCGAG
GTAGAAGACGAGGTGAAGGTCATCCAGCAGAACGTCAGGGCGTGGATCCT
GAAGTGCAACTATAAGAGCCTCAGGAAGGCGGCCAAGACCCTTCAG
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