mRNA_H-canaliculatus_F_contig1275.2291.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1275.2291.1 vs. uniprot
Match: UPI001F1F2B9F (hypothetical protein n=1 Tax=Sinobacterium norvegicum TaxID=1641715 RepID=UPI001F1F2B9F) HSP 1 Score: 63.5 bits (153), Expect = 1.220e-8 Identity = 38/131 (29.01%), Postives = 52/131 (39.69%), Query Frame = 1
Query: 1441 SHVHGAACGHVAVLHEDHVDFIVGSGQLECYEGKEKTREGWVSSTTEGSGSADTDCGCDDSSSKSNKADVVGKSGGKPATRDDLVHWDGLRPEQ--PRENCQGDAHGPQCGHDVIHHDGHLDYVVNGRLLH 1827
+H HG+ CGH A+ H DH+D++ G+L G CD+ S + P Q P + C G HGP CGH+ I HD H D++V+GRL H
Sbjct: 11 NHTHGSNCGHTAIRHGDHIDYLA-DGKLHHPHGGH----------------------CDEHS----------------------IELSNTNPAQCHPTQGCAGHVHGPDCGHEAIQHDDHTDFIVDGRLHH 96
BLAST of mRNA_H-canaliculatus_F_contig1275.2291.1 vs. uniprot
Match: A0A5R9IJL1_9GAMM (Uncharacterized protein n=1 Tax=Thalassotalea litorea TaxID=2020715 RepID=A0A5R9IJL1_9GAMM) HSP 1 Score: 63.5 bits (153), Expect = 1.380e-8 Identity = 40/129 (31.01%), Postives = 47/129 (36.43%), Query Frame = 1
Query: 1441 SHVHGAACGHVAVLHEDHVDFIVGSGQLECYEGKEKTREGWVSSTTEGSGSADTDCGCDDSSSKSNKADVVGKSGGKPATRDDLVHWDGLRPEQPRENCQGDAHGPQCGHDVIHHDGHLDYVVNGRLLH 1827
SH HG CGH A+ H DHVD+I G L C S G DCGC+ G HGP CGH+ + H H+DY+VNGRL H
Sbjct: 12 SHQHGKGCGHTAIKHGDHVDYIH-DGHLHCPXXXXYDEHNIEVSEQNPDGCHPMDCGCE----------------------------------------SGHVHGPDCGHEAVPHGDHIDYLVNGRLHH 99
BLAST of mRNA_H-canaliculatus_F_contig1275.2291.1 vs. uniprot
Match: A0A7Y4E348_9VIBR (Uncharacterized protein n=4 Tax=Vibrio TaxID=662 RepID=A0A7Y4E348_9VIBR) HSP 1 Score: 63.2 bits (152), Expect = 1.750e-8 Identity = 42/129 (32.56%), Postives = 54/129 (41.86%), Query Frame = 1
Query: 1441 SHVHGAACGHVAVLHEDHVDFIVGSGQLECYEGKEKTREGWVSSTTEGSGSADTDCGCDDSSSKSNKADVVGKSGGKPATRDDLVHWDGLRPEQPRENCQGDAHGPQCGHDVIHHDGHLDYVVNGRLLH 1827
+H HG CGH A+ H+ HVD++V G L G CD+ V+G S P DG P +C G HGP CGH+ I H H+DY+V+GRL H
Sbjct: 11 NHAHGPNCGHTAIRHDGHVDYLV-DGTLHHPHGDH----------------------CDEH--------VIGLSDTNP---------DGCHPVH---SCGGHVHGPGCGHEAIQHGDHVDYIVDGRLHH 96
BLAST of mRNA_H-canaliculatus_F_contig1275.2291.1 vs. uniprot
Match: V2TSX5_9GAMM (Uncharacterized protein n=4 Tax=Acinetobacter nectaris TaxID=1219382 RepID=V2TSX5_9GAMM) HSP 1 Score: 62.8 bits (151), Expect = 2.150e-8 Identity = 41/130 (31.54%), Postives = 57/130 (43.85%), Query Frame = 1
Query: 1438 KSHVHGAACGHVAVLHEDHVDFIVGSGQLECYEGKEKTREGWVSSTTEGSGSADTDCGCDDSSSKSNKADVVGKSGGKPATRDDLVHWDGLRPEQPRENCQGDAHGPQCGHDVIHHDGHLDYVVNGRLLH 1827
K+HVHG +CGH A+ HEDHVD++V +G L+ S + +K V GK+ PA G +G HGP CGH+ + H H+DY+V+G L H
Sbjct: 5 KNHVHGESCGHTAIKHEDHVDYLV-NGHLQS------------------------------DSKEEHKISVDGKN---PAECTQGHECSGHE--------KGHVHGPDCGHEAVPHGDHIDYLVDGHLHH 92
BLAST of mRNA_H-canaliculatus_F_contig1275.2291.1 vs. uniprot
Match: A0A380MVT5_9GAMM (Uncharacterized protein n=1 Tax=Suttonella indologenes TaxID=13276 RepID=A0A380MVT5_9GAMM) HSP 1 Score: 63.2 bits (152), Expect = 3.090e-8 Identity = 43/134 (32.09%), Postives = 54/134 (40.30%), Query Frame = 1
Query: 1444 HVHGAACGHVAVLHEDHVDFIVGSGQLECYEGKEKTREGWVSSTTEGSGSADTDCGCDDSSSKSNKADVVGKSGGKPATRDDLVHWDGLRPEQPRENCQG-----DAHGPQCGHDVIHHDGHLDYVVNGRLLHP 1830
HVHG CGH A+ H DHVD++ V++ +A DCGC V G A D +N QG HGP CGH+ + H H+DY+VNGRL HP
Sbjct: 11 HVHGKDCGHTAIQHGDHVDYLXXXXXXXXXXXXXXEHYLEVNAQNPDQCTAMKDCGC-----------VAGCDXXCEAGNCDC-----------HQNAQGCHDREHVHGPNCGHEAVPHGDHVDYLVNGRLHHP 122
BLAST of mRNA_H-canaliculatus_F_contig1275.2291.1 vs. uniprot
Match: A0A7X8TN54_9VIBR (Uncharacterized protein n=1 Tax=Vibrio agarilyticus TaxID=2726741 RepID=A0A7X8TN54_9VIBR) HSP 1 Score: 62.4 bits (150), Expect = 3.790e-8 Identity = 42/133 (31.58%), Postives = 53/133 (39.85%), Query Frame = 1
Query: 1438 KSHVHGAACGHVAVLHEDHVDFIVGSGQLECYEGKEKTREGWVSSTTEGSGSADTDCGCDDSSSKSNKADVVGKSGGKPATRDDLVHWDGLRPEQ--PRENCQGDAHGPQCGHDVIHHDGHLDYVVNGRLLHP 1830
+SHVHG CGH A+ H DHVD++V G L G CD+ ++ D PEQ P HGP CGH+ I H H+DY+V+GRL HP
Sbjct: 15 QSHVHGPNCGHTAIQHGDHVDYLV-DGVLHHPHGDH----------------------CDEH----------------------VIAIDAKNPEQCSPVGKADEHIHGPGCGHEAIKHGDHIDYIVDGRLHHP 102
BLAST of mRNA_H-canaliculatus_F_contig1275.2291.1 vs. uniprot
Match: UPI001EF60D7A (hypothetical protein n=1 Tax=Photobacterium sp. OFAV2-7 TaxID=2917748 RepID=UPI001EF60D7A) HSP 1 Score: 61.2 bits (147), Expect = 7.850e-8 Identity = 41/128 (32.03%), Postives = 55/128 (42.97%), Query Frame = 1
Query: 1444 HVHGAACGHVAVLHEDHVDFIVGSGQLECYEGKEKTREGWVSSTTEGSGSADTDCGCDDSSSKSNKADVVGKSGGKPATRDDLVHWDGLRPEQPRENCQGDAHGPQCGHDVIHHDGHLDYVVNGRLLH 1827
HVHG+ CGH A+ H DHVD++V G L G CD+ V+ SG P + + VH +C HGP CGH+ + H H+DY+V+GRL H
Sbjct: 12 HVHGSDCGHTAIRHGDHVDYLV-DGVLHHPHGDH----------------------CDEH--------VIEISGSNP-NKCNAVH-----------SCGEHVHGPGCGHEAVKHGDHIDYIVDGRLHH 96
BLAST of mRNA_H-canaliculatus_F_contig1275.2291.1 vs. uniprot
Match: A0A2P7RVL7_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium soli TaxID=1295366 RepID=A0A2P7RVL7_9HYPH) HSP 1 Score: 61.2 bits (147), Expect = 9.140e-8 Identity = 40/135 (29.63%), Postives = 51/135 (37.78%), Query Frame = 1
Query: 1423 RLGHVKSHVHGAACGHVAVLHEDHVDFIVGSGQLECYEGKEKTREGWVSSTTEGSGSADTDCGCDDSSSKSNKADVVGKSGGKPATRDDLVHWDGLRPEQPRENCQGDAHGPQCGHDVIHHDGHLDYVVNGRLLH 1827
+ H + H HG CGH A+ H H+D++ G LE GK SN V+ S P D PE G HGP CGH+ + H H+DY+V GRL H
Sbjct: 4 QTSHAEPHRHGPGCGHTAIRHHGHLDYLR-DGHLEHPHGK------------------------------SNDEHVIEVSDQNP---------DRCSPEHRCTGAAGHVHGPGCGHEAVPHGDHVDYIVEGRLQH 98
BLAST of mRNA_H-canaliculatus_F_contig1275.2291.1 vs. uniprot
Match: Q1ZWE0_PHOAS (Uncharacterized protein n=8 Tax=Photobacterium TaxID=657 RepID=Q1ZWE0_PHOAS) HSP 1 Score: 60.8 bits (146), Expect = 1.070e-7 Identity = 37/132 (28.03%), Postives = 52/132 (39.39%), Query Frame = 1
Query: 1438 KSHVHGAACGHVAVLHEDHVDFIVGSGQLECYEGKEKTREGWVSSTTEGSGSADTDCGCDDSSSKSNKADVVGKSGGKPATRDDLVHWDGLRPEQPREN--CQGDAHGPQCGHDVIHHDGHLDYVVNGRLLH 1827
+ H HG CGH A+ H+ HVD++V G+L G CD+ ++ +D P + + C HGP CGH+ I H H+DY+VNGRL H
Sbjct: 10 EDHTHGPDCGHTAIRHDGHVDYLV-DGKLHHPHGDH----------------------CDEH----------------------VIEFDDAHPNECNHSHACGDHVHGPDCGHEAIQHGDHIDYIVNGRLHH 96
BLAST of mRNA_H-canaliculatus_F_contig1275.2291.1 vs. uniprot
Match: UPI00138A3A8A (hypothetical protein n=2 Tax=Vibrio taketomensis TaxID=2572923 RepID=UPI00138A3A8A) HSP 1 Score: 60.8 bits (146), Expect = 1.070e-7 Identity = 40/128 (31.25%), Postives = 51/128 (39.84%), Query Frame = 1
Query: 1444 HVHGAACGHVAVLHEDHVDFIVGSGQLECYEGKEKTREGWVSSTTEGSGSADTDCGCDDSSSKSNKADVVGKSGGKPATRDDLVHWDGLRPEQPRENCQGDAHGPQCGHDVIHHDGHLDYVVNGRLLH 1827
H HG CGH A+ H DH+D++V G L G CD+ V+ S P + P CQG HGP CGH+ I H H+DY+V+GRL H
Sbjct: 12 HAHGKDCGHTAIRHGDHIDYLV-DGVLHHPHGDH----------------------CDEH--------VIEASEVNPNACN------------PVHTCQGHVHGPGCGHEAIQHGDHIDYIVDGRLHH 96 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1275.2291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1275.2291.1 >prot_H-canaliculatus_F_contig1275.2291.1 ID=prot_H-canaliculatus_F_contig1275.2291.1|Name=mRNA_H-canaliculatus_F_contig1275.2291.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=680bp LGLPVLQKCRRGLKTSGTRLSSLAQMKTPYVMSTQVDPAARKARERISIQback to top mRNA from alignment at H-canaliculatus_F_contig1275:9640..13566- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1275.2291.1 ID=mRNA_H-canaliculatus_F_contig1275.2291.1|Name=mRNA_H-canaliculatus_F_contig1275.2291.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3927bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1275:9640..13566- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1275:9640..13566- >mRNA_H-canaliculatus_F_contig1275.2291.1 ID=mRNA_H-canaliculatus_F_contig1275.2291.1|Name=mRNA_H-canaliculatus_F_contig1275.2291.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4080bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1275:9640..13566- (Hapterophycus canaliculatus Oshoro5f female)back to top |